Wall clock time and date at job start Tue Mar 31 2020 09:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42903 * 113.99697 * 2 1 4 4 C 1.52998 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46879 * 174.99809 * 4 3 2 6 6 C 1.53002 * 109.46897 * 55.00154 * 4 3 2 7 7 N 1.46497 * 109.47171 * 295.00245 * 4 3 2 8 8 N 1.40099 * 119.99721 * 210.00114 * 7 4 3 9 9 C 1.29814 * 120.00026 * 179.97438 * 8 7 4 10 10 C 1.47386 * 120.00104 * 179.97438 * 9 8 7 11 11 C 1.39815 * 120.06694 * 0.02562 * 10 9 8 12 12 C 1.37777 * 120.01568 * 179.97438 * 11 10 9 13 13 C 1.38952 * 120.14438 * 359.97438 * 12 11 10 14 14 O 1.35718 * 119.93048 * 180.02562 * 13 12 11 15 15 C 1.34787 * 117.00183 * 354.38140 * 14 13 12 16 16 H 1.08001 * 120.00347 * 5.07076 * 15 14 13 17 17 C 1.38603 * 119.99781 * 185.06275 * 15 14 13 18 18 N 1.31598 * 119.99939 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47047 * 60.00118 * 19 17 15 21 21 H 1.48502 * 109.46815 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46754 * 299.99686 * 19 17 15 23 23 C 1.39521 * 120.12848 * 0.02562 * 13 12 11 24 24 O 1.35947 * 120.00399 * 180.02562 * 23 13 12 25 25 C 1.42904 * 116.99750 * 180.02562 * 24 23 13 26 26 C 1.38205 * 119.98399 * 359.78572 * 23 13 12 27 27 H 1.09005 * 109.46862 * 60.00458 * 1 2 3 28 28 H 1.09004 * 109.46781 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47022 * 299.99928 * 1 2 3 30 30 H 1.09002 * 109.47159 * 59.99950 * 3 2 1 31 31 H 1.09005 * 109.47105 * 300.00055 * 3 2 1 32 32 H 1.09001 * 109.46726 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47074 * 299.99536 * 6 4 3 34 34 H 1.09000 * 109.47024 * 60.00164 * 6 4 3 35 35 H 0.96996 * 120.00211 * 29.99862 * 7 4 3 36 36 H 1.08003 * 119.99928 * 359.72957 * 9 8 7 37 37 H 1.08001 * 119.99076 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.92547 * 179.97438 * 12 11 10 39 39 H 0.96996 * 120.00000 * 180.02562 * 18 17 15 40 40 H 1.08993 * 109.47087 * 60.00043 * 25 24 23 41 41 H 1.09003 * 109.47198 * 180.02562 * 25 24 23 42 42 H 1.09008 * 109.47165 * 300.00025 * 25 24 23 43 43 H 1.07997 * 120.06989 * 180.25043 * 26 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9785 2.1766 -0.0890 6 6 3.9790 0.3195 -1.1807 7 7 3.9757 0.5645 1.2527 8 7 5.2288 0.8854 1.7906 9 6 5.6188 0.3362 2.9003 10 6 6.9374 0.6733 3.4660 11 6 7.7691 1.5850 2.8088 12 6 9.0013 1.8998 3.3387 13 6 9.4204 1.3134 4.5267 14 8 10.6348 1.6271 5.0452 15 6 11.4308 2.4213 4.3020 16 1 11.0618 2.8443 3.3793 17 6 12.7230 2.6953 4.7220 18 7 13.1727 2.1796 5.8461 19 14 13.8260 3.7966 3.6925 20 1 13.2007 5.1368 3.5581 21 1 15.1483 3.9309 4.3548 22 1 14.0060 3.1970 2.3460 23 6 8.5952 0.4030 5.1876 24 8 9.0076 -0.1688 6.3500 25 6 8.1119 -1.0923 6.9721 26 6 7.3565 0.0863 4.6627 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 5.0656 0.2338 -1.1805 33 1 3.5360 -0.6724 -1.0911 34 1 3.6514 0.7810 -2.1123 35 1 3.3995 -0.0683 1.7093 36 1 4.9753 -0.3649 3.4112 37 1 7.4457 2.0425 1.8855 38 1 9.6428 2.6038 2.8297 39 1 14.0768 2.3716 6.1403 40 1 7.9143 -1.9209 6.2921 41 1 8.5620 -1.4735 7.8888 42 1 7.1761 -0.5866 7.2103 43 1 6.7150 -0.6152 5.1752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777900535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:11 Heat of formation + Delta-G solvation = -59.373547 kcal Electronic energy + Delta-G solvation = -24321.247607 eV Core-core repulsion = 20561.408913 eV Total energy + Delta-G solvation = -3759.838694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19123 -39.39977 -39.21086 -38.27902 -37.09053 -34.86253 -34.18522 -31.50022 -31.01423 -29.15904 -28.24400 -27.70249 -27.24057 -26.47708 -24.17637 -23.18945 -21.84155 -21.43374 -19.85030 -19.16729 -18.33025 -17.60948 -17.14708 -17.02595 -16.72559 -16.59390 -16.28124 -16.18647 -15.53714 -15.46901 -15.18615 -15.10784 -14.85141 -14.54940 -14.01220 -13.89252 -13.45521 -13.40635 -13.12040 -12.91354 -12.78065 -12.70024 -12.63358 -12.42843 -12.18402 -12.05082 -11.98897 -11.96221 -11.64103 -11.36365 -10.88002 -10.76846 -10.63505 -9.64634 -9.10578 -8.42316 -8.20982 -6.06340 0.17641 0.62814 1.37656 1.46392 1.54176 1.77208 1.99357 2.21011 2.63469 2.84330 2.91971 3.21897 3.45359 3.83229 3.97230 4.04739 4.13630 4.36395 4.37627 4.39289 4.44414 4.50286 4.50377 4.53896 4.58708 4.59914 4.70218 4.77393 4.80047 4.87299 4.90231 4.94539 5.04260 5.17222 5.20922 5.39389 5.51718 5.65158 5.80289 5.98996 6.05032 6.17626 6.37557 6.68411 7.01409 7.61165 7.83464 8.80426 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.002616 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.767472 B =10700.137583 C =12089.278750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.058 3.942 4 C 0.182 3.818 5 H 0.092 0.908 6 C -0.156 4.156 7 N -0.655 5.655 8 N -0.252 5.252 9 C 0.079 3.921 10 C -0.085 4.085 11 C -0.070 4.070 12 C -0.215 4.215 13 C 0.093 3.907 14 O -0.217 6.217 15 C -0.413 4.413 16 H 0.104 0.896 17 C -0.024 4.024 18 N -0.917 5.917 19 Si 1.019 2.981 20 H -0.256 1.256 21 H -0.272 1.272 22 H -0.257 1.257 23 C 0.045 3.955 24 O -0.343 6.343 25 C 0.019 3.981 26 C -0.132 4.132 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.381 0.619 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.272 0.728 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.377 -3.924 -10.590 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.020 4.020 4 C 0.076 3.924 5 H 0.109 0.891 6 C -0.215 4.215 7 N -0.393 5.393 8 N -0.060 5.060 9 C -0.131 4.131 10 C -0.088 4.088 11 C -0.090 4.090 12 C -0.234 4.234 13 C 0.041 3.959 14 O -0.123 6.123 15 C -0.489 4.489 16 H 0.121 0.879 17 C -0.222 4.222 18 N -0.555 5.555 19 Si 0.838 3.162 20 H -0.180 1.180 21 H -0.197 1.197 22 H -0.182 1.182 23 C -0.001 4.001 24 O -0.259 6.259 25 C -0.075 4.075 26 C -0.153 4.153 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.219 0.781 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -23.654 -3.405 -11.067 26.336 hybrid contribution -0.078 -0.307 0.622 0.698 sum -23.732 -3.712 -10.445 26.193 Atomic orbital electron populations 1.22895 0.79599 1.03624 1.00831 1.87865 1.21236 1.28109 1.95594 1.22890 0.91860 0.85154 1.02110 1.20791 0.91953 0.97185 0.82437 0.89054 1.22139 1.00495 1.00808 0.98086 1.48032 1.13681 1.51209 1.26391 1.74079 1.01143 1.19182 1.11602 1.23647 0.95257 1.00293 0.93922 1.17942 0.93829 1.01144 0.95880 1.21023 0.91972 0.96684 0.99363 1.20978 0.99369 1.05755 0.97342 1.19473 0.87415 0.95209 0.93805 1.84003 1.22717 1.61640 1.43906 1.21850 0.94506 1.26287 1.06287 0.87895 1.26618 0.97706 0.99651 0.98180 1.70232 1.18110 1.44407 1.22758 0.84644 0.76364 0.77702 0.77463 1.18035 1.19703 1.18162 1.18304 0.94477 0.97813 0.89461 1.86197 1.46107 1.58454 1.35100 1.23288 0.94295 0.91613 0.98305 1.21044 0.93893 1.03147 0.97203 0.92869 0.88921 0.93530 0.92463 0.89691 0.94122 0.92662 0.90395 0.78061 0.85347 0.84685 0.85346 0.91911 0.91450 0.87472 0.91332 0.81882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.16 9.54 -148.98 -1.42 -7.58 16 3 C 0.06 0.75 5.71 71.98 0.41 1.16 16 4 C 0.18 3.23 3.65 44.99 0.16 3.40 16 5 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 6 C -0.16 -2.80 9.32 71.98 0.67 -2.13 16 7 N -0.65 -14.46 6.10 -169.39 -1.03 -15.49 16 8 N -0.25 -6.97 10.60 -52.21 -0.55 -7.52 16 9 C 0.08 2.15 10.74 87.40 0.94 3.09 16 10 C -0.08 -2.85 5.87 -20.13 -0.12 -2.97 16 11 C -0.07 -2.64 9.57 22.54 0.22 -2.42 16 12 C -0.21 -9.75 9.14 22.33 0.20 -9.55 16 13 C 0.09 4.84 6.67 22.75 0.15 4.99 16 14 O -0.22 -13.57 9.53 -7.98 -0.08 -13.64 16 15 C -0.41 -24.67 9.48 67.91 0.64 -24.02 16 16 H 0.10 5.59 5.19 -2.91 -0.02 5.57 16 17 C -0.02 -1.39 5.49 84.81 0.47 -0.92 16 18 N -0.92 -57.77 13.67 21.61 0.30 -57.47 16 19 Si 1.02 43.73 29.55 68.60 2.03 45.76 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 C 0.04 1.99 6.70 22.57 0.15 2.14 16 24 O -0.34 -15.22 10.28 -78.98 -0.81 -16.03 16 25 C 0.02 0.54 9.81 113.37 1.11 1.65 16 26 C -0.13 -4.50 8.77 22.62 0.20 -4.30 16 27 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 28 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 1.07 7.56 -2.39 -0.02 1.05 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.38 7.71 8.37 -213.33 -1.78 5.92 16 36 H 0.13 2.70 8.02 -2.91 -0.02 2.68 16 37 H 0.14 4.62 7.54 -2.91 -0.02 4.60 16 38 H 0.13 5.83 5.62 -2.91 -0.02 5.81 16 39 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.07 1.58 7.67 -2.39 -0.02 1.56 16 41 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.07 1.59 7.65 -2.38 -0.02 1.57 16 43 H 0.16 4.11 6.28 -2.91 -0.02 4.09 16 Total: -1.00 -77.57 368.01 4.13 -73.44 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.76 Total: 26.93 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 6.46 Total: -28.40 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.29 Total: -80.48 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -2.31 Total: -37.26 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -77.57 4.13 -73.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777900535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.071 kcal (2) G-P(sol) polarization free energy of solvation -77.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds