Wall clock time and date at job start Tue Mar 31 2020 09:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47435 * 2 1 4 4 O 1.42906 * 109.47143 * 119.99937 * 2 1 3 5 5 C 1.52996 * 109.47228 * 239.99595 * 2 1 3 6 6 C 1.53007 * 109.47269 * 175.00225 * 5 2 1 7 7 H 1.08999 * 109.46756 * 304.99841 * 6 5 2 8 8 C 1.52997 * 109.47035 * 184.99963 * 6 5 2 9 9 N 1.46501 * 109.47108 * 64.99947 * 6 5 2 10 10 C 1.34768 * 120.00224 * 204.99691 * 9 6 5 11 11 O 1.21589 * 119.99894 * 0.02562 * 10 9 6 12 12 N 1.34778 * 120.00531 * 179.97438 * 10 9 6 13 13 C 1.39934 * 120.00258 * 174.74221 * 12 10 9 14 14 C 1.38957 * 120.03743 * 326.17858 * 13 12 10 15 15 C 1.38159 * 120.06946 * 179.71822 * 14 13 12 16 16 C 1.38169 * 120.13937 * 0.55936 * 15 14 13 17 17 C 1.38910 * 120.06368 * 359.71871 * 16 15 14 18 18 O 1.35757 * 120.02928 * 179.97438 * 17 16 15 19 19 C 1.34836 * 116.99634 * 185.92921 * 18 17 16 20 20 H 1.08005 * 120.00455 * 5.40263 * 19 18 17 21 21 C 1.38650 * 119.99954 * 185.40718 * 19 18 17 22 22 N 1.31555 * 119.99860 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00128 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47090 * 90.00341 * 23 21 19 25 25 H 1.48507 * 109.46876 * 209.99848 * 23 21 19 26 26 H 1.48493 * 109.47008 * 329.99717 * 23 21 19 27 27 C 1.38708 * 120.03347 * 146.45625 * 13 12 10 28 28 H 1.09003 * 109.46592 * 300.00429 * 1 2 3 29 29 H 1.09003 * 109.46822 * 60.00161 * 1 2 3 30 30 H 1.08996 * 109.47259 * 180.02562 * 1 2 3 31 31 H 0.96695 * 114.00105 * 59.99518 * 4 2 1 32 32 H 1.08999 * 109.47246 * 294.99928 * 5 2 1 33 33 H 1.08996 * 109.47430 * 55.00365 * 5 2 1 34 34 H 1.09001 * 109.47591 * 299.99976 * 8 6 5 35 35 H 1.09001 * 109.47582 * 59.99905 * 8 6 5 36 36 H 1.08998 * 109.47182 * 180.02562 * 8 6 5 37 37 H 0.97001 * 119.99752 * 25.00005 * 9 6 5 38 38 H 0.96999 * 119.99379 * 354.74859 * 12 10 9 39 39 H 1.08007 * 119.96484 * 0.02562 * 14 13 12 40 40 H 1.07997 * 119.93517 * 180.25491 * 15 14 13 41 41 H 1.07991 * 119.96866 * 179.69845 * 16 15 14 42 42 H 0.97001 * 120.00479 * 179.97438 * 22 21 19 43 43 H 1.07993 * 120.07120 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2491 6 6 3.5649 -0.6134 -1.3136 7 1 3.8571 0.4357 -1.2678 8 6 4.0645 -1.2252 -2.6239 9 7 4.1537 -1.3343 -0.1822 10 6 5.3747 -0.9912 0.2735 11 8 5.9875 -0.0832 -0.2541 12 7 5.9163 -1.6540 1.3146 13 6 7.2265 -1.3731 1.7178 14 6 8.1838 -1.0199 0.7746 15 6 9.4762 -0.7367 1.1725 16 6 9.8239 -0.8149 2.5075 17 6 8.8729 -1.1731 3.4545 18 8 9.2154 -1.2503 4.7658 19 6 8.2807 -1.7212 5.6159 20 1 7.3436 -2.0980 5.2334 21 6 8.5225 -1.7217 6.9812 22 7 9.6641 -1.2631 7.4471 23 14 7.2273 -2.3734 8.1589 24 1 7.4392 -3.8275 8.3723 25 1 7.3362 -1.6615 9.4577 26 1 5.8770 -2.1490 7.5832 27 6 7.5724 -1.4526 3.0587 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7210 -1.5952 1.2330 32 1 1.7517 -1.7716 -1.2054 33 1 1.6055 -0.2619 -2.1369 34 1 3.7723 -2.2743 -2.6698 35 1 3.6265 -0.6890 -3.4657 36 1 5.1509 -1.1488 -2.6696 37 1 3.6647 -2.0585 0.2388 38 1 5.3977 -2.3258 1.7844 39 1 7.9161 -0.9617 -0.2702 40 1 10.2175 -0.4584 0.4381 41 1 10.8361 -0.5978 2.8149 42 1 9.8332 -1.2631 8.4022 43 1 6.8312 -1.7309 3.7931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783043270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:39 Heat of formation + Delta-G solvation = -85.660599 kcal Electronic energy + Delta-G solvation = -25251.160500 eV Core-core repulsion = 21490.181914 eV Total energy + Delta-G solvation = -3760.978586 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.37651 -38.95328 -38.22536 -36.53801 -35.30660 -34.08004 -32.34829 -32.10830 -30.61458 -29.07398 -28.18215 -27.16936 -25.24133 -22.96682 -22.05637 -21.71322 -21.08480 -20.30756 -18.54832 -17.78062 -17.33598 -16.67235 -16.53293 -15.51832 -15.34020 -14.96338 -14.87534 -14.62060 -14.27488 -14.10723 -13.93411 -13.51743 -13.47763 -13.05919 -12.88336 -12.78079 -12.52872 -12.25367 -12.11056 -11.94719 -11.68713 -11.46098 -11.30233 -11.09194 -11.05200 -10.87268 -10.74017 -10.41488 -10.31592 -9.88352 -9.55385 -9.37438 -8.98796 -8.74673 -7.60382 -7.04816 -6.39439 -3.98809 2.16770 2.48825 2.81339 3.14853 3.15971 3.20598 3.48316 3.95498 4.00566 4.27195 4.37200 4.50672 4.69728 4.72655 4.91295 4.98963 5.14724 5.16231 5.23438 5.35743 5.36364 5.40456 5.50938 5.65157 5.72011 5.77678 5.87749 6.04533 6.10161 6.18736 6.35078 6.37116 6.56313 6.66488 6.91629 7.10002 7.19437 7.33626 7.39292 7.42822 7.51239 7.92173 8.05289 8.18131 8.80432 9.06219 9.77907 10.78932 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.003450 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.153295 B = 8114.276983 C = 9830.675254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.101 3.899 3 H 0.099 0.901 4 O -0.551 6.551 5 C -0.160 4.160 6 C 0.165 3.835 7 H 0.088 0.912 8 C -0.165 4.165 9 N -0.729 5.729 10 C 0.707 3.293 11 O -0.576 6.576 12 N -0.682 5.682 13 C 0.202 3.798 14 C -0.205 4.205 15 C -0.063 4.063 16 C -0.204 4.204 17 C 0.169 3.831 18 O -0.178 6.178 19 C -0.390 4.390 20 H 0.090 0.910 21 C 0.039 3.961 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.258 4.258 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.367 0.633 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.392 0.608 38 H 0.401 0.599 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.269 0.731 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.965 -2.616 -16.804 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.042 3.958 3 H 0.117 0.883 4 O -0.356 6.356 5 C -0.198 4.198 6 C 0.060 3.940 7 H 0.106 0.894 8 C -0.224 4.224 9 N -0.385 5.385 10 C 0.408 3.592 11 O -0.453 6.453 12 N -0.329 5.329 13 C 0.108 3.892 14 C -0.226 4.226 15 C -0.082 4.082 16 C -0.224 4.224 17 C 0.115 3.885 18 O -0.081 6.081 19 C -0.467 4.467 20 H 0.107 0.893 21 C -0.165 4.165 22 N -0.499 5.499 23 Si 0.764 3.236 24 H -0.200 1.200 25 H -0.203 1.203 26 H -0.193 1.193 27 C -0.280 4.280 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.214 0.786 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.226 0.774 38 H 0.235 0.765 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.079 0.921 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.866 -1.101 -16.867 23.878 hybrid contribution -1.646 -1.502 0.888 2.399 sum -18.512 -2.603 -15.979 24.593 Atomic orbital electron populations 1.22516 0.96512 1.02429 1.02847 1.21936 0.92481 0.97096 0.84290 0.88309 1.86748 1.76704 1.28433 1.43674 1.22678 0.95444 1.01880 0.99847 1.20687 0.90911 0.97534 0.84896 0.89393 1.22227 1.02688 1.00731 0.96734 1.45031 1.17957 1.39488 1.36018 1.15859 0.81286 0.81845 0.80243 1.90929 1.62042 1.31577 1.60706 1.42564 1.14398 1.42398 1.33492 1.17179 0.81775 0.98067 0.92185 1.20554 0.92563 1.10815 0.98682 1.20514 0.95348 0.97753 0.94583 1.20221 0.99092 1.11320 0.91791 1.19068 0.91445 0.92092 0.85878 1.84022 1.39858 1.72624 1.11640 1.21266 0.98099 1.40521 0.86784 0.89292 1.25262 0.97638 0.97104 0.96520 1.70037 1.22524 1.43070 1.14292 0.85739 0.79718 0.78758 0.79344 1.19950 1.20304 1.19297 1.20787 0.98027 1.15401 0.93789 0.91719 0.91633 0.92402 0.78635 0.91022 0.89399 0.92734 0.91883 0.91661 0.77385 0.76467 0.86318 0.86751 0.86493 0.92097 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.00 9.53 37.16 0.35 -0.65 16 2 C 0.10 0.71 3.59 -26.73 -0.10 0.62 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 4 O -0.55 -4.76 11.26 -35.23 -0.40 -5.16 16 5 C -0.16 -0.92 4.53 -26.73 -0.12 -1.04 16 6 C 0.17 1.52 2.57 -67.93 -0.17 1.34 16 7 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 8 C -0.17 -1.42 9.48 37.16 0.35 -1.06 16 9 N -0.73 -7.73 3.87 -58.68 -0.23 -7.96 16 10 C 0.71 11.13 8.26 -86.92 -0.72 10.41 16 11 O -0.58 -11.33 13.72 5.29 0.07 -11.26 16 12 N -0.68 -10.90 5.35 -14.24 -0.08 -10.97 16 13 C 0.20 4.05 6.27 -83.72 -0.52 3.53 16 14 C -0.21 -4.13 8.65 -39.34 -0.34 -4.47 16 15 C -0.06 -1.24 10.03 -39.64 -0.40 -1.64 16 16 C -0.20 -4.55 9.99 -39.36 -0.39 -4.94 16 17 C 0.17 4.23 6.64 -39.13 -0.26 3.97 16 18 O -0.18 -5.17 9.76 0.01 0.00 -5.17 16 19 C -0.39 -11.02 9.44 30.88 0.29 -10.73 16 20 H 0.09 2.31 5.30 -52.48 -0.28 2.04 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.66 13.67 55.48 0.76 -24.91 16 23 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 C -0.26 -5.80 9.04 -39.21 -0.35 -6.16 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.37 1.75 8.79 45.56 0.40 2.15 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.39 3.05 7.55 -40.82 -0.31 2.74 16 38 H 0.40 5.09 8.83 -40.82 -0.36 4.73 16 39 H 0.12 2.36 6.45 -52.48 -0.34 2.02 16 40 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.13 2.84 5.71 -52.49 -0.30 2.54 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -35.52 359.94 -7.31 -42.83 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -5.36 Total: 11.38 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.48 Total: -9.85 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.46 Total: -43.84 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.32 Total: -21.58 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.52 -7.31 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783043270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.830 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds