Wall clock time and date at job start Tue Mar 31 2020 09:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46666 * 2 1 4 4 C 1.52997 * 109.47050 * 240.00272 * 2 1 3 5 5 C 1.50708 * 109.47127 * 175.00022 * 4 2 1 6 6 C 1.34506 * 125.79179 * 90.01288 * 5 4 2 7 7 C 1.41388 * 106.83998 * 179.97438 * 6 5 4 8 8 C 1.34515 * 106.83843 * 359.97438 * 7 6 5 9 9 O 1.34304 * 108.42331 * 0.02562 * 8 7 6 10 10 N 1.46499 * 109.47391 * 119.99461 * 2 1 3 11 11 C 1.34769 * 120.00448 * 275.00355 * 10 2 1 12 12 O 1.21346 * 119.99865 * 0.02562 * 11 10 2 13 13 C 1.49448 * 120.00473 * 180.02562 * 11 10 2 14 14 O 1.21353 * 119.99816 * 359.97438 * 13 11 10 15 15 N 1.34769 * 120.00473 * 179.97438 * 13 11 10 16 16 C 1.46505 * 120.00286 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.47079 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.46792 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.47266 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99648 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00601 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00243 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99597 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47033 * 90.00338 * 23 21 19 25 25 H 1.48494 * 109.47253 * 209.99918 * 23 21 19 26 26 H 1.48502 * 109.47535 * 330.00441 * 23 21 19 27 27 H 1.09005 * 109.46666 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47404 * 299.99567 * 1 2 3 29 29 H 1.09003 * 109.47621 * 60.00459 * 1 2 3 30 30 H 1.08998 * 109.47369 * 54.99474 * 4 2 1 31 31 H 1.09005 * 109.46999 * 294.99290 * 4 2 1 32 32 H 1.08000 * 126.58117 * 359.96027 * 6 5 4 33 33 H 1.08001 * 126.57691 * 180.26094 * 7 6 5 34 34 H 1.07998 * 125.78442 * 180.02562 * 8 7 6 35 35 H 0.97003 * 119.99551 * 95.00447 * 10 2 1 36 36 H 0.97003 * 120.00000 * 0.02562 * 15 13 11 37 37 H 1.08996 * 109.47461 * 300.00231 * 16 15 13 38 38 H 1.08999 * 109.46439 * 60.00302 * 16 15 13 39 39 H 1.08996 * 109.47321 * 300.00511 * 17 16 15 40 40 H 1.08999 * 109.47080 * 60.00889 * 17 16 15 41 41 H 1.09003 * 109.47572 * 300.00260 * 18 17 16 42 42 H 1.08999 * 109.47699 * 60.00472 * 18 17 16 43 43 H 0.97003 * 119.99596 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 6 4.4156 -1.4849 -0.7752 7 6 5.7105 -1.0013 -1.0723 8 6 5.5507 0.1351 -1.7740 9 8 4.2350 0.3644 -1.9165 10 7 2.0184 -0.6905 1.1962 11 6 2.1471 -0.0182 2.3571 12 8 1.8580 1.1591 2.4117 13 6 2.6458 -0.7224 3.5772 14 8 2.9345 -1.8998 3.5228 15 7 2.7750 -0.0499 4.7380 16 6 3.2635 -0.7405 5.9342 17 6 3.3161 0.2430 7.1051 18 6 3.8268 -0.4780 8.3541 19 6 3.8780 0.4904 9.5076 20 1 3.5769 1.5177 9.3640 21 6 4.3103 0.0655 10.7460 22 7 4.3546 0.9106 11.7527 23 14 4.8318 -1.7109 10.9941 24 1 6.2848 -1.8436 10.7170 25 1 4.5563 -2.1165 12.3958 26 1 4.0692 -2.5849 10.0669 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6053 -0.2617 -2.1370 31 1 1.7517 -1.7715 -1.2056 32 1 4.1742 -2.3809 -0.2226 33 1 6.6481 -1.4592 -0.7936 34 1 6.3455 0.7574 -2.1578 35 1 2.2491 -1.6317 1.1526 36 1 2.5439 0.8911 4.7817 37 1 2.5908 -1.5623 6.1795 38 1 4.2625 -1.1329 5.7446 39 1 3.9890 1.0646 6.8596 40 1 2.3172 0.6358 7.2948 41 1 3.1542 -1.2999 8.5998 42 1 4.8257 -0.8706 8.1643 43 1 4.6591 0.6117 12.6238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787937195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:09 Heat of formation + Delta-G solvation = -73.417797 kcal Electronic energy + Delta-G solvation = -24481.255395 eV Core-core repulsion = 20720.807696 eV Total energy + Delta-G solvation = -3760.447698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.86914 -40.72112 -38.77975 -36.78146 -35.69950 -33.41179 -33.25343 -32.39105 -31.48184 -30.36361 -27.67350 -26.67587 -25.02972 -22.78616 -22.10475 -21.57008 -20.76911 -20.74855 -20.10746 -18.49684 -17.67521 -17.11805 -16.74009 -16.38500 -16.04106 -15.85768 -15.33530 -15.07255 -14.70680 -14.23999 -14.08920 -13.82222 -13.68810 -13.37071 -13.12342 -13.06019 -12.75504 -12.72606 -12.52369 -12.09260 -12.00065 -11.97169 -11.73169 -11.52301 -11.11677 -10.92418 -10.19598 -10.17929 -9.98348 -9.78977 -9.57532 -9.51552 -9.24378 -9.06957 -8.76333 -8.56635 -6.06983 -4.05967 1.37756 1.41048 2.26171 2.34972 2.65867 3.18291 3.30127 3.37799 3.41269 3.58224 4.16180 4.28053 4.43192 4.45943 4.57590 4.73068 4.80734 4.85937 5.02435 5.13026 5.26155 5.26728 5.43621 5.50283 5.53802 5.56485 5.62880 5.76581 5.82726 5.92751 5.99930 6.15976 6.20356 6.38522 6.53594 6.73559 6.81662 6.86009 7.19639 7.33012 7.34142 7.67857 7.74380 7.98857 8.49468 8.97138 9.54839 11.06261 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020940 B = 0.002366 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.819273 B =11830.863099 C =12428.882432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.143 3.857 3 H 0.097 0.903 4 C -0.047 4.047 5 C -0.018 4.018 6 C -0.201 4.201 7 C -0.212 4.212 8 C -0.042 4.042 9 O -0.176 6.176 10 N -0.697 5.697 11 C 0.511 3.489 12 O -0.518 6.518 13 C 0.501 3.499 14 O -0.527 6.527 15 N -0.691 5.691 16 C 0.112 3.888 17 C -0.115 4.115 18 C -0.010 4.010 19 C -0.523 4.523 20 H 0.072 0.928 21 C 0.066 3.934 22 N -0.902 5.902 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.264 1.264 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.202 0.798 35 H 0.411 0.589 36 H 0.412 0.588 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 -4.401 -31.114 31.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.115 0.885 4 C -0.084 4.084 5 C -0.068 4.068 6 C -0.220 4.220 7 C -0.231 4.231 8 C -0.109 4.109 9 O -0.072 6.072 10 N -0.352 5.352 11 C 0.292 3.708 12 O -0.393 6.393 13 C 0.281 3.719 14 O -0.404 6.404 15 N -0.343 5.343 16 C -0.011 4.011 17 C -0.153 4.153 18 C -0.048 4.048 19 C -0.561 4.561 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.541 5.541 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.189 1.189 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.219 0.781 35 H 0.248 0.752 36 H 0.248 0.752 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.253 -4.131 -31.049 31.610 hybrid contribution 0.674 -1.033 0.447 1.311 sum -3.579 -5.163 -30.603 31.241 Atomic orbital electron populations 1.22198 0.93859 1.02848 1.03407 1.21077 0.94583 0.97866 0.82629 0.88540 1.20474 0.85985 1.03146 0.98838 1.22235 0.94480 0.89698 1.00429 1.21630 0.92345 1.02484 1.05536 1.21880 0.98998 0.98118 1.04084 1.24038 0.82913 0.99846 1.04150 1.84002 1.18225 1.43998 1.60969 1.45804 1.65784 1.14854 1.08721 1.20284 0.78751 0.86981 0.84782 1.90764 1.48405 1.15325 1.84851 1.20024 0.80071 0.87124 0.84697 1.90749 1.49357 1.15301 1.85003 1.46016 1.63958 1.15128 1.09215 1.21844 0.99633 0.96432 0.83147 1.21740 1.02036 0.97737 0.93804 1.19501 0.95919 0.96621 0.92779 1.21092 1.44420 0.97641 0.92914 0.90938 1.25031 0.95031 0.97487 0.95944 1.69914 1.47656 1.34976 1.01569 0.86772 0.79375 0.85702 0.77405 1.20249 1.21367 1.18904 0.91854 0.91305 0.90968 0.88015 0.87976 0.83464 0.83402 0.78110 0.75237 0.75158 0.91105 0.91145 0.91830 0.91787 0.96244 0.96684 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.48 37.16 0.35 -0.67 16 2 C 0.14 1.07 2.56 -67.93 -0.17 0.89 16 3 H 0.10 0.91 7.58 -51.93 -0.39 0.52 16 4 C -0.05 -0.26 5.29 -27.88 -0.15 -0.41 16 5 C -0.02 -0.16 6.33 -35.62 -0.23 -0.38 16 6 C -0.20 -1.81 10.69 -39.70 -0.42 -2.23 16 7 C -0.21 -1.88 10.91 -39.70 -0.43 -2.31 16 8 C -0.04 -0.34 12.09 29.42 0.36 0.01 16 9 O -0.18 -1.68 10.65 5.70 0.06 -1.62 16 10 N -0.70 -6.56 4.68 -54.24 -0.25 -6.82 16 11 C 0.51 6.47 7.85 -11.59 -0.09 6.38 16 12 O -0.52 -7.56 16.14 5.50 0.09 -7.47 16 13 C 0.50 7.19 7.89 -11.59 -0.09 7.10 16 14 O -0.53 -8.47 16.48 5.49 0.09 -8.38 16 15 N -0.69 -9.98 5.55 -60.73 -0.34 -10.31 16 16 C 0.11 1.80 5.67 -4.04 -0.02 1.78 16 17 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 18 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 19 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 20 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 21 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 22 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 23 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.20 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.41 3.44 8.07 -40.82 -0.33 3.11 16 36 H 0.41 5.51 7.94 -40.82 -0.32 5.19 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 42 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -34.14 371.01 -6.71 -40.86 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.47 Total: 3.86 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.59 Total: -5.66 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.18 Total: -44.09 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.24 Total: -17.47 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.14 -6.71 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787937195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.559 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds