Wall clock time and date at job start Tue Mar 31 2020 09:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47180 * 2 1 4 4 C 1.52997 * 109.46812 * 120.00047 * 2 1 3 5 5 C 1.50702 * 109.47070 * 184.99677 * 4 2 1 6 6 C 1.34520 * 125.78625 * 90.00256 * 5 4 2 7 7 C 1.41381 * 106.83580 * 180.29744 * 6 5 4 8 8 C 1.34513 * 106.84363 * 359.57150 * 7 6 5 9 9 O 1.34302 * 125.79164 * 270.04068 * 5 4 2 10 10 N 1.46504 * 109.46919 * 239.99320 * 2 1 3 11 11 C 1.34777 * 119.99378 * 85.00849 * 10 2 1 12 12 O 1.21345 * 120.00363 * 359.97438 * 11 10 2 13 13 C 1.49451 * 119.99731 * 179.97438 * 11 10 2 14 14 O 1.21353 * 120.00169 * 359.97438 * 13 11 10 15 15 N 1.34778 * 120.00155 * 180.02562 * 13 11 10 16 16 C 1.46499 * 120.00362 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.47456 * 179.97438 * 16 15 13 18 18 C 1.52993 * 109.47069 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.46798 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99964 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99606 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00357 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99851 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47253 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47373 * 119.99699 * 23 21 19 26 26 H 1.48506 * 109.47049 * 239.99878 * 23 21 19 27 27 H 1.09002 * 109.47585 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47299 * 300.00213 * 1 2 3 29 29 H 1.09003 * 109.46838 * 60.00058 * 1 2 3 30 30 H 1.08999 * 109.47588 * 64.99855 * 4 2 1 31 31 H 1.09001 * 109.47044 * 304.99856 * 4 2 1 32 32 H 1.08002 * 126.57789 * 0.02807 * 6 5 4 33 33 H 1.08009 * 126.57222 * 179.73218 * 7 6 5 34 34 H 1.07999 * 125.78721 * 180.19275 * 8 7 6 35 35 H 0.96996 * 120.00290 * 264.99700 * 10 2 1 36 36 H 0.97005 * 119.99613 * 359.97438 * 15 13 11 37 37 H 1.09000 * 109.47114 * 299.99725 * 16 15 13 38 38 H 1.09006 * 109.46844 * 59.99619 * 16 15 13 39 39 H 1.09000 * 109.47134 * 300.00202 * 17 16 15 40 40 H 1.09004 * 109.46491 * 60.00176 * 17 16 15 41 41 H 1.09000 * 109.47201 * 300.00031 * 18 17 16 42 42 H 1.08996 * 109.47591 * 60.00388 * 18 17 16 43 43 H 0.97007 * 120.00136 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3127 6 6 4.2362 0.3660 1.9169 7 6 5.6065 0.0745 1.7270 8 6 5.6677 -1.0721 1.0264 9 8 4.4141 -1.4833 0.7751 10 7 2.0183 -0.6908 -1.1961 11 6 2.1471 -0.0184 -2.3571 12 8 1.8582 1.1589 -2.4117 13 6 2.6458 -0.7228 -3.5772 14 8 2.9351 -1.9001 -3.5225 15 7 2.7751 -0.0504 -4.7381 16 6 3.2644 -0.7408 -5.9339 17 6 3.3158 0.2422 -7.1053 18 6 3.8263 -0.4790 -8.3543 19 6 3.8775 0.4895 -9.5078 20 1 3.5757 1.5165 -9.3644 21 6 4.3086 0.0641 -10.7464 22 7 4.6756 -1.1867 -10.9211 23 14 4.3727 1.2646 -12.1761 24 1 3.9114 2.6009 -11.7215 25 1 5.7676 1.3655 -12.6756 26 1 3.4896 0.7817 -13.2680 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.7516 -1.7715 1.2056 31 1 1.6053 -0.2617 2.1369 32 1 3.8256 1.2157 2.4421 33 1 6.4437 0.6590 2.0794 34 1 6.5716 -1.5746 0.7152 35 1 2.2490 -1.6319 -1.1525 36 1 2.5441 0.8907 -4.7817 37 1 4.2637 -1.1326 -5.7440 38 1 2.5922 -1.5631 -6.1794 39 1 2.3165 0.6338 -7.2951 40 1 3.9878 1.0647 -6.8600 41 1 4.8256 -0.8708 -8.1647 42 1 3.1540 -1.3012 -8.5994 43 1 4.9785 -1.4860 -11.7927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787937201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:13 Heat of formation + Delta-G solvation = -77.519165 kcal Electronic energy + Delta-G solvation = -24437.385217 eV Core-core repulsion = 20676.759670 eV Total energy + Delta-G solvation = -3760.625547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.83432 -40.64715 -38.69639 -36.71175 -35.56917 -33.44380 -33.27303 -32.30259 -31.23790 -30.29159 -27.24482 -26.66165 -24.91518 -22.91556 -22.07723 -21.55877 -20.76417 -20.68288 -20.15459 -18.41625 -17.61006 -17.06640 -16.37330 -16.34204 -15.95272 -15.72699 -15.25452 -14.98732 -14.69963 -14.43863 -13.84938 -13.82614 -13.69729 -13.33484 -13.10136 -13.05422 -12.77993 -12.43786 -12.31635 -11.99220 -11.87885 -11.78964 -11.66160 -11.48432 -10.93011 -10.75775 -10.57966 -10.18741 -9.90231 -9.77180 -9.52951 -9.36572 -9.11692 -8.96243 -8.72997 -8.38380 -6.02890 -4.05771 1.44576 1.44820 2.33808 2.35204 2.70521 3.25366 3.30105 3.37677 3.41634 3.65332 4.22354 4.31325 4.43896 4.53738 4.58152 4.73096 4.82286 4.90994 5.02906 5.15729 5.28095 5.33212 5.49745 5.54967 5.60388 5.64088 5.69939 5.79177 5.85247 6.04643 6.08776 6.22044 6.28885 6.54653 6.70224 6.85685 6.94045 6.95627 7.42601 7.62050 7.73536 7.74737 7.95700 8.07607 8.36986 9.01008 9.58654 11.08448 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.002253 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.125140 B =12424.955284 C =12996.276031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.142 3.858 3 H 0.097 0.903 4 C -0.048 4.048 5 C -0.016 4.016 6 C -0.207 4.207 7 C -0.216 4.216 8 C -0.036 4.036 9 O -0.171 6.171 10 N -0.698 5.698 11 C 0.512 3.488 12 O -0.521 6.521 13 C 0.499 3.501 14 O -0.525 6.525 15 N -0.692 5.692 16 C 0.114 3.886 17 C -0.122 4.122 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.057 0.943 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.202 0.798 35 H 0.413 0.587 36 H 0.411 0.589 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.862 0.958 29.353 29.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.115 0.885 4 C -0.085 4.085 5 C -0.066 4.066 6 C -0.226 4.226 7 C -0.235 4.235 8 C -0.104 4.104 9 O -0.067 6.067 10 N -0.352 5.352 11 C 0.292 3.708 12 O -0.396 6.396 13 C 0.279 3.721 14 O -0.402 6.402 15 N -0.344 5.344 16 C -0.008 4.008 17 C -0.160 4.160 18 C -0.014 4.014 19 C -0.560 4.560 20 H 0.075 0.925 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.219 0.781 35 H 0.250 0.750 36 H 0.247 0.753 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.878 0.587 29.042 29.455 hybrid contribution 0.384 0.770 -0.765 1.152 sum -4.494 1.357 28.277 28.664 Atomic orbital electron populations 1.22199 0.93919 1.02876 1.03350 1.21118 0.94567 0.97813 0.82684 0.88489 1.20512 0.85685 1.03353 0.98987 1.22258 0.92280 0.91723 1.00387 1.21593 0.93381 1.01376 1.06261 1.21841 0.97536 0.98992 1.05172 1.24082 0.85769 0.97915 1.02646 1.84033 1.15695 1.45720 1.61244 1.45824 1.65676 1.15012 1.08698 1.20326 0.78656 0.86955 0.84825 1.90749 1.48591 1.15352 1.84921 1.20024 0.80215 0.87173 0.84697 1.90761 1.49195 1.15295 1.84938 1.46066 1.63956 1.15024 1.09312 1.21840 0.99627 0.96445 0.82910 1.21925 1.01427 0.97820 0.94871 1.19037 0.96574 0.95755 0.89997 1.21241 1.43873 0.96432 0.94440 0.92517 1.25029 0.95348 0.95193 0.98923 1.69974 1.44462 1.15329 1.23561 0.86520 0.77660 0.81309 0.82413 1.19723 1.20993 1.20996 0.91856 0.90991 0.91317 0.89099 0.86896 0.83530 0.83493 0.78098 0.75026 0.75350 0.91139 0.91106 0.92431 0.92447 0.96201 0.96189 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 9.48 37.16 0.35 -0.70 16 2 C 0.14 1.10 2.56 -67.93 -0.17 0.93 16 3 H 0.10 0.89 7.58 -51.93 -0.39 0.50 16 4 C -0.05 -0.28 5.29 -27.88 -0.15 -0.42 16 5 C -0.02 -0.14 6.30 -35.62 -0.22 -0.37 16 6 C -0.21 -1.79 10.81 -39.70 -0.43 -2.22 16 7 C -0.22 -1.89 10.91 -39.70 -0.43 -2.32 16 8 C -0.04 -0.32 12.09 29.42 0.36 0.03 16 9 O -0.17 -1.76 10.65 5.71 0.06 -1.70 16 10 N -0.70 -7.22 4.78 -54.24 -0.26 -7.48 16 11 C 0.51 6.86 7.85 -11.58 -0.09 6.77 16 12 O -0.52 -7.81 16.14 5.50 0.09 -7.73 16 13 C 0.50 7.68 7.89 -11.58 -0.09 7.59 16 14 O -0.53 -9.15 16.48 5.49 0.09 -9.06 16 15 N -0.69 -10.63 5.55 -60.73 -0.34 -10.97 16 16 C 0.11 1.99 5.67 -4.04 -0.02 1.96 16 17 C -0.12 -2.40 5.27 -26.73 -0.14 -2.55 16 18 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 19 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 23 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.41 4.10 8.07 -40.82 -0.33 3.77 16 36 H 0.41 5.78 7.95 -40.82 -0.32 5.45 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -33.75 374.80 -7.10 -40.84 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.51 Total: 4.14 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.60 Total: -4.20 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.14 Total: -44.48 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.24 Total: -18.48 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.75 -7.10 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787937201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.675 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds