Wall clock time and date at job start Tue Mar 31 2020 10:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38499 * 125.83478 * 2 1 4 4 C 1.40113 * 125.92992 * 0.03042 * 3 2 1 5 5 H 1.08002 * 119.99545 * 0.02562 * 4 3 2 6 6 C 1.40034 * 120.00373 * 180.02562 * 4 3 2 7 7 N 1.30802 * 120.00028 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00251 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47211 * 60.00038 * 8 6 4 10 10 H 1.48502 * 109.47085 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.46998 * 300.00191 * 8 6 4 12 12 N 1.32248 * 108.14266 * 179.79253 * 3 2 1 13 13 N 1.40161 * 107.75981 * 0.37422 * 12 3 2 14 14 C 1.46500 * 126.14504 * 179.88240 * 13 12 3 15 15 N 1.46898 * 109.47191 * 269.68951 * 14 13 12 16 16 C 1.48667 * 111.11084 * 279.51007 * 15 14 13 17 17 C 1.54384 * 104.67573 * 201.09621 * 16 15 14 18 18 C 1.54258 * 105.05443 * 23.77750 * 17 16 15 19 19 C 1.48562 * 111.00060 * 164.09589 * 15 14 13 20 20 H 1.09000 * 110.41087 * 40.14070 * 19 15 14 21 21 C 1.53006 * 110.40784 * 277.82064 * 19 15 14 22 22 C 1.53001 * 117.49874 * 302.68647 * 21 19 15 23 23 C 1.52996 * 117.50316 * 11.31312 * 21 19 15 24 24 C 1.34733 * 125.83258 * 180.02562 * 2 1 3 25 25 S 1.71198 * 125.97429 * 359.94242 * 24 2 1 26 26 H 1.09002 * 109.47481 * 269.98564 * 1 2 3 27 27 H 1.09003 * 109.47047 * 29.98764 * 1 2 3 28 28 H 1.09006 * 109.47417 * 149.98501 * 1 2 3 29 29 H 0.96990 * 120.00430 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46986 * 149.68877 * 14 13 12 31 31 H 1.09005 * 109.46993 * 29.68809 * 14 13 12 32 32 H 1.09003 * 110.43971 * 82.26230 * 16 15 14 33 33 H 1.08998 * 110.40667 * 319.92056 * 16 15 14 34 34 H 1.08994 * 110.32479 * 264.88176 * 17 16 15 35 35 H 1.08996 * 110.40527 * 142.71489 * 17 16 15 36 36 H 1.09005 * 110.32360 * 241.09693 * 18 17 16 37 37 H 1.09000 * 110.41143 * 118.94029 * 18 17 16 38 38 H 1.09001 * 115.55710 * 157.00201 * 21 19 15 39 39 H 1.08997 * 117.50155 * 0.02562 * 22 21 19 40 40 H 1.09000 * 117.49540 * 214.98161 * 22 21 19 41 41 H 1.08991 * 117.50163 * 145.02043 * 23 21 19 42 42 H 1.09000 * 117.51377 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2758 1.1228 0.0000 4 6 1.8374 2.4536 0.0006 5 1 0.7800 2.6737 0.0015 6 6 2.7701 3.4981 0.0000 7 7 4.0506 3.2315 -0.0017 8 14 2.1855 5.2723 0.0015 9 1 1.3671 5.5228 1.2151 10 1 3.3604 6.1806 -0.0001 11 1 1.3642 5.5239 -1.2100 12 7 3.5358 0.7209 0.0046 13 7 3.5374 -0.6807 -0.0012 14 6 4.7215 -1.5434 -0.0013 15 7 5.1168 -1.8321 -1.3863 16 6 4.2808 -2.9157 -1.9670 17 6 5.1171 -3.4683 -3.1412 18 6 6.5773 -3.1093 -2.7969 19 6 6.5005 -2.3700 -1.4440 20 1 6.6732 -3.0638 -0.6212 21 6 7.5188 -1.2288 -1.4008 22 6 7.4193 -0.1519 -2.4831 23 6 7.0014 0.1667 -1.0461 24 6 2.2537 -1.0923 -0.0005 25 16 1.7192 -2.7187 0.0002 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8901 -0.5137 28 1 -0.3634 -0.8899 -0.5141 29 1 4.6966 3.9550 -0.0017 30 1 4.4912 -2.4765 0.5129 31 1 5.5394 -1.0378 0.5121 32 1 3.3350 -2.5136 -2.3301 33 1 4.1023 -3.6959 -1.2271 34 1 4.8200 -2.9913 -4.0751 35 1 5.0004 -4.5495 -3.2151 36 1 6.9970 -2.4561 -3.5620 37 1 7.1785 -4.0134 -2.7007 38 1 8.5148 -1.5003 -1.0510 39 1 6.6282 -0.2561 -3.2256 40 1 8.3498 0.2851 -2.8452 41 1 7.6570 0.8133 -0.4630 42 1 5.9356 0.2722 -0.8438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794625178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:46 Heat of formation + Delta-G solvation = 116.222521 kcal Electronic energy + Delta-G solvation = -24420.016394 eV Core-core repulsion = 21142.837739 eV Total energy + Delta-G solvation = -3277.178655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88537 -39.35233 -35.69873 -34.63372 -33.93368 -31.85009 -30.18818 -28.49098 -27.41695 -26.55574 -24.57464 -22.67559 -22.12440 -21.27387 -20.89160 -20.31368 -19.08944 -17.81828 -16.72488 -16.21049 -15.93078 -15.69560 -14.99955 -14.78321 -14.68784 -14.43286 -13.65428 -13.25431 -13.04519 -12.82615 -12.65608 -12.31140 -12.09816 -11.91857 -11.80535 -11.47914 -11.21424 -11.08180 -10.95579 -10.80944 -10.70782 -10.63128 -10.53832 -10.26380 -10.06244 -9.85376 -9.57203 -9.48966 -9.18445 -8.87369 -8.23059 -7.02677 -6.78022 -6.66368 -5.11818 2.33186 2.57819 2.80996 2.91954 2.93905 3.35246 3.55144 3.65958 4.04423 4.15196 4.35821 4.85813 4.88214 4.95238 5.12602 5.20370 5.30007 5.41457 5.48899 5.54044 5.59986 5.67748 5.81518 5.85158 5.86564 6.03594 6.05249 6.09119 6.10276 6.22530 6.26420 6.34475 6.44493 6.54489 6.57668 6.60142 6.81888 6.96346 7.06132 7.15397 7.21197 7.59211 7.78935 8.25194 8.37011 9.16565 9.94953 Molecular weight = 308.14amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.006030 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.319387 B = 4642.068864 C = 6354.594066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.514 5.514 3 C 0.372 3.628 4 C -0.438 4.438 5 H 0.096 0.904 6 C 0.077 3.923 7 N -0.734 5.734 8 Si 0.927 3.073 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.263 1.263 12 N -0.330 5.330 13 N -0.367 5.367 14 C 0.309 3.691 15 N -0.515 5.515 16 C 0.042 3.958 17 C -0.125 4.125 18 C -0.113 4.113 19 C 0.099 3.901 20 H 0.056 0.944 21 C -0.160 4.160 22 C -0.166 4.166 23 C -0.169 4.169 24 C 0.467 3.533 25 S -0.719 6.719 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.286 0.714 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 -2.458 -2.964 6.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.215 5.215 3 C 0.123 3.877 4 C -0.480 4.480 5 H 0.114 0.886 6 C -0.150 4.150 7 N -0.358 5.358 8 Si 0.750 3.250 9 H -0.187 1.187 10 H -0.199 1.199 11 H -0.187 1.187 12 N -0.161 5.161 13 N -0.152 5.152 14 C 0.097 3.903 15 N -0.241 5.241 16 C -0.085 4.085 17 C -0.164 4.164 18 C -0.152 4.152 19 C -0.010 4.010 20 H 0.074 0.926 21 C -0.179 4.179 22 C -0.203 4.203 23 C -0.206 4.206 24 C 0.097 3.903 25 S -0.594 6.594 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.716 -2.554 -3.227 7.044 hybrid contribution -0.637 0.773 0.470 1.107 sum 5.079 -1.781 -2.757 6.047 Atomic orbital electron populations 1.21745 0.75502 1.04104 1.02908 1.45952 1.08186 1.05012 1.62366 1.21304 0.84111 0.88465 0.93787 1.18287 0.95342 0.85599 1.48743 0.88649 1.25801 0.94338 1.01802 0.93033 1.69854 1.01498 1.35299 1.29110 0.86044 0.79255 0.79639 0.80053 1.18708 1.19921 1.18698 1.79360 1.13763 0.82102 1.40918 1.49138 1.03076 1.07257 1.55724 1.21919 0.85122 0.92632 0.90600 1.65097 1.02231 1.38930 1.17852 1.23295 0.96643 0.92581 0.96023 1.22335 0.94710 1.00240 0.99067 1.22296 0.96862 0.99435 0.96566 1.21981 0.87836 0.93778 0.97369 0.92631 1.22220 0.98601 0.90509 1.06546 1.22720 1.02025 1.02412 0.93095 1.23301 1.04786 0.95191 0.97305 1.22876 0.85019 0.92350 0.90087 1.92693 1.85401 0.99181 1.82162 0.91561 0.89808 0.89271 0.90317 0.90633 0.87623 0.89896 0.92061 0.91613 0.91628 0.90762 0.91627 0.88308 0.88760 0.90163 0.90134 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.80 10.65 59.85 0.64 2.43 16 2 N -0.51 -11.60 3.17 -124.65 -0.39 -12.00 16 3 C 0.37 9.09 7.50 -155.27 -1.16 7.93 16 4 C -0.44 -10.13 8.98 -38.21 -0.34 -10.47 16 5 H 0.10 1.99 7.11 -52.49 -0.37 1.61 16 6 C 0.08 1.72 5.50 -17.32 -0.10 1.63 16 7 N -0.73 -17.42 11.90 55.55 0.66 -16.76 16 8 Si 0.93 16.57 29.56 -169.99 -5.02 11.55 16 9 H -0.26 -4.63 7.11 56.52 0.40 -4.22 16 10 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 11 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 12 N -0.33 -8.24 10.11 31.21 0.32 -7.92 16 13 N -0.37 -8.38 3.83 -65.05 -0.25 -8.62 16 14 C 0.31 5.98 4.62 -63.32 -0.29 5.68 16 15 N -0.52 -9.03 4.22 -225.91 -0.95 -9.98 16 16 C 0.04 0.73 5.16 -2.12 -0.01 0.72 16 17 C -0.13 -1.73 7.00 -25.35 -0.18 -1.91 16 18 C -0.11 -1.43 6.47 -25.35 -0.16 -1.59 16 19 C 0.10 1.42 2.67 -66.07 -0.18 1.24 16 20 H 0.06 0.75 7.99 -51.93 -0.42 0.34 16 21 C -0.16 -2.25 5.79 -90.62 -0.52 -2.77 16 22 C -0.17 -2.47 9.26 -26.73 -0.25 -2.72 16 23 C -0.17 -2.84 8.84 -26.73 -0.24 -3.08 16 24 C 0.47 10.95 7.68 -86.93 -0.67 10.28 16 25 S -0.72 -17.10 27.41 -107.50 -2.95 -20.04 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.08 1.32 7.32 -51.93 -0.38 0.94 16 28 H 0.09 1.58 7.61 -51.93 -0.40 1.18 16 29 H 0.29 6.20 8.29 -40.82 -0.34 5.87 16 30 H 0.08 1.46 7.14 -51.93 -0.37 1.09 16 31 H 0.11 1.98 6.29 -51.93 -0.33 1.66 16 32 H 0.08 1.71 7.68 -51.93 -0.40 1.31 16 33 H 0.06 1.12 7.25 -51.93 -0.38 0.74 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.93 6.90 -51.93 -0.36 0.57 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.55 7.89 -51.93 -0.41 1.14 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.13 2.74 4.86 -51.93 -0.25 2.49 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -28.09 344.99 -13.01 -41.09 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.15 Total: 10.12 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -3.46 Total: 7.37 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.62 Total: -55.29 kcal Atomic # 14 Polarization: 16.57 SS G_CDS: -5.02 Total: 11.55 kcal Atomic # 16 Polarization: -17.10 SS G_CDS: -2.95 Total: -20.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.09 -13.01 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794625178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.316 kcal (2) G-P(sol) polarization free energy of solvation -28.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds