Wall clock time and date at job start Tue Mar 31 2020 10:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38494 * 125.83587 * 2 1 4 4 C 1.40125 * 125.92723 * 359.96968 * 3 2 1 5 5 H 1.07999 * 119.99948 * 359.97438 * 4 3 2 6 6 C 1.40037 * 119.99928 * 179.97438 * 4 3 2 7 7 N 1.30802 * 120.00175 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00016 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47249 * 90.00220 * 8 6 4 10 10 H 1.48499 * 109.47293 * 210.00228 * 8 6 4 11 11 H 1.48504 * 109.47104 * 330.00474 * 8 6 4 12 12 N 1.32239 * 108.14996 * 180.22740 * 3 2 1 13 13 N 1.40172 * 107.75300 * 359.59669 * 12 3 2 14 14 C 1.46500 * 126.14147 * 180.14269 * 13 12 3 15 15 N 1.46894 * 109.47125 * 270.31286 * 14 13 12 16 16 C 1.47959 * 111.00187 * 290.82266 * 15 14 13 17 17 C 1.55135 * 104.95985 * 213.84815 * 16 15 14 18 18 C 1.53940 * 101.49924 * 35.80482 * 17 16 15 19 19 C 1.52518 * 115.77765 * 94.96379 * 18 17 16 20 20 C 1.54017 * 86.68263 * 93.30237 * 19 18 17 21 21 C 1.52517 * 115.78329 * 196.44318 * 18 17 16 22 22 C 1.47755 * 111.00189 * 170.00376 * 15 14 13 23 23 C 1.34721 * 125.83192 * 179.97438 * 2 1 3 24 24 S 1.71203 * 125.97704 * 0.05521 * 23 2 1 25 25 H 1.08997 * 109.47069 * 89.99479 * 1 2 3 26 26 H 1.08995 * 109.47236 * 209.99991 * 1 2 3 27 27 H 1.09001 * 109.46645 * 329.99730 * 1 2 3 28 28 H 0.96996 * 119.99852 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47423 * 30.32081 * 14 13 12 30 30 H 1.09005 * 109.46855 * 150.31227 * 14 13 12 31 31 H 1.09003 * 110.33789 * 332.71567 * 16 15 14 32 32 H 1.08994 * 110.34334 * 94.97415 * 16 15 14 33 33 H 1.08997 * 111.01609 * 277.75298 * 17 16 15 34 34 H 1.08996 * 111.04741 * 153.87206 * 17 16 15 35 35 H 1.08996 * 113.68202 * 207.74991 * 19 18 17 36 36 H 1.09000 * 113.67441 * 338.86169 * 19 18 17 37 37 H 1.08997 * 113.57666 * 269.87141 * 20 19 18 38 38 H 1.08999 * 113.57405 * 139.08851 * 20 19 18 39 39 H 1.08998 * 113.67485 * 21.15114 * 21 18 17 40 40 H 1.08997 * 113.67842 * 152.25609 * 21 18 17 41 41 H 1.09004 * 109.98492 * 243.49586 * 22 15 14 42 42 H 1.09002 * 109.97932 * 4.79443 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2759 1.1228 0.0000 4 6 1.8374 2.4536 -0.0006 5 1 0.7801 2.6738 -0.0015 6 6 2.7701 3.4982 0.0000 7 7 4.0507 3.2315 0.0007 8 14 2.1855 5.2723 -0.0015 9 1 2.0290 5.7432 1.3981 10 1 3.1830 6.1216 -0.7008 11 1 0.8798 5.3627 -0.7031 12 7 3.5358 0.7210 -0.0050 13 7 3.5374 -0.6807 0.0011 14 6 4.7216 -1.5433 0.0015 15 7 5.1178 -1.8316 -1.3833 16 6 4.1265 -2.7066 -2.0473 17 6 4.9578 -3.5955 -3.0093 18 6 6.2459 -3.8089 -2.1938 19 6 6.3018 -5.0879 -1.3648 20 6 7.0080 -5.7332 -2.5718 21 6 7.4516 -4.3155 -2.9786 22 6 6.4367 -2.4961 -1.4293 23 6 2.2537 -1.0922 0.0005 24 16 1.7193 -2.7187 -0.0001 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 4.6967 3.9551 0.0007 29 1 5.5391 -1.0380 0.5158 30 1 4.4910 -2.4766 0.5153 31 1 3.6122 -3.3236 -1.3105 32 1 3.4091 -2.1083 -2.6089 33 1 5.1678 -3.0720 -3.9419 34 1 4.4543 -4.5432 -3.2000 35 1 6.9328 -5.0085 -0.4795 36 1 5.3217 -5.5145 -1.1517 37 1 6.3225 -6.1959 -3.2818 38 1 7.8356 -6.3862 -2.2948 39 1 7.3869 -4.1271 -4.0502 40 1 8.4089 -4.0169 -2.5514 41 1 7.1550 -1.8628 -1.9499 42 1 6.7856 -2.7017 -0.4173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794632248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:59 Heat of formation + Delta-G solvation = 106.704740 kcal Electronic energy + Delta-G solvation = -23840.182705 eV Core-core repulsion = 20562.591328 eV Total energy + Delta-G solvation = -3277.591377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.91777 -40.17898 -36.57545 -34.23479 -33.83322 -31.06692 -29.88707 -28.25783 -26.93032 -26.53690 -25.74875 -24.35410 -22.11684 -21.75736 -20.89786 -20.50773 -18.32939 -17.78475 -16.68536 -15.95674 -15.77736 -15.42993 -15.15507 -15.05852 -14.71544 -14.31903 -14.18832 -13.47151 -13.19780 -12.95323 -12.52134 -12.36693 -12.22603 -11.82426 -11.76203 -11.71926 -11.51487 -11.41903 -11.24818 -11.08249 -10.78272 -10.65970 -10.53877 -10.36612 -10.19819 -10.09998 -10.00486 -9.53536 -9.20454 -8.87302 -8.04996 -7.01980 -6.77976 -6.60183 -5.12466 2.31068 2.56436 2.79517 2.91927 2.95962 3.34892 3.54786 3.65791 4.07016 4.35213 4.51510 4.54465 4.68133 4.81476 4.86243 5.12095 5.23557 5.36407 5.51903 5.54622 5.60611 5.67718 5.73521 5.76722 5.84282 5.84841 5.85625 5.96734 6.07159 6.08706 6.19168 6.25825 6.31852 6.39804 6.53887 6.54650 6.64118 6.81853 7.00372 7.21052 7.30778 7.60471 7.79420 8.24441 8.36468 9.16090 9.95103 Molecular weight = 308.14amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.004162 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.969716 B = 6725.648942 C = 7779.942286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.514 5.514 3 C 0.371 3.629 4 C -0.439 4.439 5 H 0.097 0.903 6 C 0.076 3.924 7 N -0.736 5.736 8 Si 0.928 3.072 9 H -0.266 1.266 10 H -0.273 1.273 11 H -0.259 1.259 12 N -0.329 5.329 13 N -0.368 5.368 14 C 0.321 3.679 15 N -0.540 5.540 16 C 0.033 3.967 17 C -0.103 4.103 18 C -0.099 4.099 19 C -0.129 4.129 20 C -0.139 4.139 21 C -0.125 4.125 22 C 0.067 3.933 23 C 0.465 3.535 24 S -0.715 6.715 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.286 0.714 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.378 -6.022 -2.906 7.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.215 5.215 3 C 0.122 3.878 4 C -0.480 4.480 5 H 0.115 0.885 6 C -0.151 4.151 7 N -0.360 5.360 8 Si 0.752 3.248 9 H -0.191 1.191 10 H -0.198 1.198 11 H -0.183 1.183 12 N -0.161 5.161 13 N -0.153 5.153 14 C 0.109 3.891 15 N -0.266 5.266 16 C -0.095 4.095 17 C -0.142 4.142 18 C -0.100 4.100 19 C -0.167 4.167 20 C -0.176 4.176 21 C -0.162 4.162 22 C -0.061 4.061 23 C 0.095 3.905 24 S -0.590 6.590 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.388 -6.125 -3.135 8.740 hybrid contribution -0.747 0.839 0.338 1.173 sum 4.641 -5.287 -2.796 7.570 Atomic orbital electron populations 1.21757 0.75432 1.04130 1.02991 1.45967 1.08235 1.04995 1.62267 1.21347 0.84073 0.88515 0.93850 1.18346 0.95411 0.85561 1.48730 0.88500 1.25838 0.94307 1.01944 0.92977 1.69883 1.01594 1.35254 1.29250 0.85964 0.79742 0.79683 0.79452 1.19107 1.19786 1.18302 1.79442 1.13770 0.82187 1.40652 1.49165 1.03180 1.07310 1.55629 1.21907 0.84776 0.92041 0.90422 1.63543 1.02726 1.44766 1.15572 1.23634 0.93904 0.94214 0.97749 1.22387 0.94019 0.99751 0.97998 1.22174 0.96283 0.94369 0.97144 1.22825 1.01209 0.95806 0.96826 1.22859 1.00119 0.96316 0.98325 1.22725 0.97432 0.96047 1.00039 1.22485 0.91244 0.93028 0.99319 1.22876 0.85017 0.92401 0.90218 1.92621 1.85057 0.99058 1.82275 0.91487 0.89218 0.89771 0.90336 0.88198 0.90826 0.88650 0.91482 0.91187 0.91001 0.90162 0.91037 0.90346 0.91759 0.91388 0.90108 0.90289 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.80 10.65 59.85 0.64 2.43 16 2 N -0.51 -11.77 3.17 -124.66 -0.39 -12.17 16 3 C 0.37 9.29 7.50 -155.28 -1.16 8.13 16 4 C -0.44 -10.35 8.98 -38.20 -0.34 -10.70 16 5 H 0.10 2.05 7.11 -52.49 -0.37 1.67 16 6 C 0.08 1.73 5.50 -17.32 -0.10 1.64 16 7 N -0.74 -18.07 11.90 55.55 0.66 -17.41 16 8 Si 0.93 16.76 29.56 -169.99 -5.02 11.73 16 9 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 10 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 11 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 12 N -0.33 -8.60 10.77 31.21 0.34 -8.27 16 13 N -0.37 -8.68 3.68 -65.05 -0.24 -8.92 16 14 C 0.32 6.36 5.60 -63.32 -0.35 6.00 16 15 N -0.54 -9.95 5.33 -235.41 -1.25 -11.21 16 16 C 0.03 0.60 5.51 -2.11 -0.01 0.59 16 17 C -0.10 -1.49 6.25 -25.11 -0.16 -1.65 16 18 C -0.10 -1.25 0.94 -154.48 -0.14 -1.39 16 19 C -0.13 -1.49 7.31 -26.45 -0.19 -1.68 16 20 C -0.14 -1.36 7.96 -25.70 -0.20 -1.57 16 21 C -0.12 -1.29 7.39 -26.45 -0.20 -1.49 16 22 C 0.07 0.97 6.35 -3.29 -0.02 0.95 16 23 C 0.46 11.06 7.37 -86.94 -0.64 10.42 16 24 S -0.71 -16.98 26.57 -107.50 -2.86 -19.84 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.09 1.58 7.61 -51.93 -0.40 1.19 16 27 H 0.08 1.33 7.32 -51.93 -0.38 0.95 16 28 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 29 H 0.10 1.88 8.04 -51.93 -0.42 1.46 16 30 H 0.07 1.43 7.35 -51.93 -0.38 1.05 16 31 H 0.10 1.92 5.08 -51.57 -0.26 1.66 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 35 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 36 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 42 H 0.05 0.72 7.29 -51.93 -0.38 0.34 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -29.50 346.96 -12.79 -42.29 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.36 Total: 6.87 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: -2.89 Total: 11.69 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.89 Total: -57.97 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.02 Total: 11.73 kcal Atomic # 16 Polarization: -16.98 SS G_CDS: -2.86 Total: -19.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.50 -12.79 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794632248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.991 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds