Wall clock time and date at job start Tue Mar 31 2020 10:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35193 * 126.00696 * 2 1 4 4 C 1.34569 * 107.61966 * 180.02562 * 3 2 1 5 5 C 1.40485 * 108.03883 * 0.06613 * 4 3 2 6 6 N 1.30132 * 108.22690 * 359.88679 * 5 4 3 7 7 C 1.50953 * 123.48601 * 179.68892 * 5 4 3 8 8 C 1.53370 * 108.20342 * 343.43806 * 7 5 4 9 9 C 1.53029 * 109.74739 * 50.64275 * 8 7 5 10 10 C 1.50883 * 128.32482 * 180.16514 * 4 3 2 11 11 H 1.09002 * 109.72100 * 283.07185 * 10 4 3 12 12 C 1.50704 * 109.72090 * 43.67919 * 10 4 3 13 13 O 1.20822 * 120.00054 * 119.99674 * 12 10 4 14 14 O 1.34228 * 119.99751 * 300.00372 * 12 10 4 15 15 C 1.45201 * 116.99743 * 179.97438 * 14 12 10 16 16 C 1.53000 * 109.47074 * 179.97438 * 15 14 12 17 17 O 1.42903 * 109.47240 * 65.00346 * 16 15 14 18 18 C 1.42901 * 114.00195 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47102 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99774 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00075 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00199 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99857 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46986 * 90.00546 * 23 21 19 25 25 H 1.48503 * 109.46800 * 210.00235 * 23 21 19 26 26 H 1.48497 * 109.47160 * 330.00332 * 23 21 19 27 27 H 1.09000 * 109.47117 * 270.00034 * 1 2 3 28 28 H 1.08998 * 109.47323 * 30.00209 * 1 2 3 29 29 H 1.09005 * 109.47550 * 149.99879 * 1 2 3 30 30 H 1.08003 * 126.19044 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.71533 * 223.75941 * 7 5 4 32 32 H 1.09005 * 109.70867 * 103.11293 * 7 5 4 33 33 H 1.08999 * 109.42574 * 290.55387 * 8 7 5 34 34 H 1.09004 * 109.37827 * 170.69719 * 8 7 5 35 35 H 1.08995 * 109.43113 * 168.18568 * 9 8 7 36 36 H 1.08999 * 109.43094 * 48.33350 * 9 8 7 37 37 H 1.08989 * 109.47663 * 299.99680 * 15 14 12 38 38 H 1.09004 * 109.46839 * 60.00221 * 15 14 12 39 39 H 1.09004 * 109.47580 * 185.00520 * 16 15 14 40 40 H 1.09010 * 109.47401 * 305.00136 * 16 15 14 41 41 H 1.08993 * 109.46931 * 300.00119 * 18 17 16 42 42 H 1.09006 * 109.46630 * 60.00077 * 18 17 16 43 43 H 0.96995 * 120.00017 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2598 1.0936 0.0000 4 6 3.5368 0.6692 -0.0006 5 6 3.5282 -0.7357 -0.0025 6 7 2.2897 -1.1352 -0.0006 7 6 4.7821 -1.5762 -0.0105 8 6 5.9554 -0.6823 -0.4309 9 6 5.9646 0.5916 0.4169 10 6 4.7980 1.4973 0.0026 11 1 4.9787 1.8961 -0.9956 12 6 4.6595 2.6311 0.9857 13 8 5.4288 2.7244 1.9126 14 8 3.6812 3.5372 0.8315 15 6 3.6075 4.6015 1.8164 16 6 2.4394 5.5299 1.4776 17 8 1.2095 4.8131 1.6028 18 6 0.0494 5.5931 1.3061 19 6 -1.1834 4.7417 1.4689 20 1 -1.0903 3.7085 1.7693 21 6 -2.4300 5.2818 1.2343 22 7 -3.5059 4.5390 1.3768 23 14 -2.5910 7.0691 0.7154 24 1 -2.5465 7.1603 -0.7661 25 1 -3.8829 7.6125 1.2062 26 1 -1.4716 7.8552 1.2936 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.9296 2.1220 -0.0004 31 1 4.6710 -2.3955 -0.7207 32 1 4.9632 -1.9756 0.9875 33 1 5.8501 -0.4170 -1.4828 34 1 6.8913 -1.2217 -0.2850 35 1 6.9055 1.1206 0.2663 36 1 5.8624 0.3274 1.4695 37 1 3.4545 4.1710 2.8060 38 1 4.5375 5.1701 1.8073 39 1 2.4377 6.3770 2.1635 40 1 2.5471 5.8909 0.4547 41 1 -0.0020 6.4417 1.9882 42 1 0.1078 5.9549 0.2795 43 1 -4.3829 4.9191 1.2121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815242249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:16 Heat of formation + Delta-G solvation = -65.081239 kcal Electronic energy + Delta-G solvation = -25862.994139 eV Core-core repulsion = 22102.907941 eV Total energy + Delta-G solvation = -3760.086198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53266 -40.17976 -37.46126 -36.70077 -35.91786 -32.83316 -32.69142 -32.00205 -30.27437 -28.65214 -27.70294 -27.10188 -24.38684 -22.59960 -21.99277 -21.85532 -21.25393 -20.19129 -18.84094 -17.65543 -17.06507 -16.84268 -16.30807 -16.02833 -15.41536 -15.30798 -14.90451 -14.76038 -14.64893 -14.39272 -13.92462 -13.41319 -13.11754 -12.88775 -12.74615 -12.59000 -12.52667 -12.45068 -12.34422 -11.81636 -11.71231 -11.28507 -11.22152 -11.09966 -11.00014 -10.94545 -10.73806 -10.57034 -10.45366 -10.10106 -9.95224 -9.30340 -9.10038 -8.99224 -8.59508 -8.23513 -6.21577 -4.21174 2.05307 2.27588 2.64413 2.69480 3.00318 3.17414 3.25450 3.25720 4.26731 4.29919 4.42284 4.63156 4.71571 4.74021 5.08871 5.09981 5.10767 5.15020 5.20200 5.32152 5.35761 5.37243 5.43415 5.47606 5.63909 5.67015 5.70241 5.74085 5.78606 5.81025 5.87048 5.94911 6.14290 6.16941 6.20123 6.48221 6.57949 6.73884 6.88284 7.18884 7.48366 7.84566 7.85380 7.90228 8.53868 8.87775 9.37631 10.91107 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.004004 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.690181 B = 6991.160744 C = 8511.107540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.373 5.373 3 C 0.098 3.902 4 C -0.260 4.260 5 C 0.083 3.917 6 N -0.297 5.297 7 C -0.038 4.038 8 C -0.112 4.112 9 C -0.102 4.102 10 C 0.008 3.992 11 H 0.110 0.890 12 C 0.470 3.530 13 O -0.514 6.514 14 O -0.343 6.343 15 C 0.073 3.927 16 C 0.058 3.942 17 O -0.377 6.377 18 C 0.168 3.832 19 C -0.520 4.520 20 H 0.082 0.918 21 C 0.074 3.926 22 N -0.894 5.894 23 Si 0.875 3.125 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.266 1.266 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.189 0.811 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.004 0.996 42 H 0.000 1.000 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.271 -6.683 -5.265 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.154 5.154 3 C -0.048 4.048 4 C -0.272 4.272 5 C -0.085 4.085 6 N -0.119 5.119 7 C -0.077 4.077 8 C -0.150 4.150 9 C -0.139 4.139 10 C -0.012 4.012 11 H 0.127 0.873 12 C 0.313 3.687 13 O -0.403 6.403 14 O -0.259 6.259 15 C -0.001 4.001 16 C -0.020 4.020 17 O -0.296 6.296 18 C 0.093 3.907 19 C -0.558 4.558 20 H 0.100 0.900 21 C -0.128 4.128 22 N -0.532 5.532 23 Si 0.701 3.299 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.191 1.191 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.206 0.794 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.021 0.979 42 H 0.018 0.982 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.248 -7.815 -4.924 18.690 hybrid contribution 0.027 2.237 -0.136 2.242 sum 16.275 -5.577 -5.060 17.933 Atomic orbital electron populations 1.21967 0.73150 1.04669 1.04171 1.48572 1.06890 1.03187 1.56710 1.22509 0.90264 0.94366 0.97672 1.19352 0.93037 0.93332 1.21447 1.22194 0.93446 0.93182 0.99655 1.76987 1.00934 1.08690 1.25253 1.20117 0.88474 0.96350 1.02739 1.21554 0.97750 0.95472 1.00244 1.21473 0.96222 0.95009 1.01226 1.19345 0.93943 0.90194 0.97710 0.87270 1.23686 0.77575 0.82231 0.85177 1.90626 1.43021 1.74483 1.32152 1.86556 1.50410 1.36678 1.52241 1.23151 0.98047 0.87108 0.91776 1.22409 0.85633 0.93416 1.00519 1.87954 1.12964 1.38410 1.90265 1.20637 0.84005 0.92239 0.93845 1.20833 0.87953 0.99796 1.47208 0.90016 1.24746 0.95376 0.97794 0.94876 1.69859 0.98085 1.36320 1.48926 0.86870 0.78089 0.85472 0.79445 1.19875 1.20745 1.19108 0.90282 0.88436 0.89646 0.79402 0.89995 0.89895 0.91204 0.90533 0.90747 0.90494 0.90480 0.90324 0.91886 0.93005 0.97873 0.98185 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.38 11.47 59.85 0.69 2.06 16 2 N -0.37 -5.93 4.02 -68.29 -0.27 -6.20 16 3 C 0.10 1.56 10.69 -17.37 -0.19 1.37 16 4 C -0.26 -3.72 5.41 -104.98 -0.57 -4.29 16 5 C 0.08 1.17 7.10 -82.34 -0.58 0.59 16 6 N -0.30 -4.78 12.56 33.75 0.42 -4.35 16 7 C -0.04 -0.37 6.31 -27.57 -0.17 -0.55 16 8 C -0.11 -0.91 5.86 -26.52 -0.16 -1.06 16 9 C -0.10 -1.03 4.61 -26.52 -0.12 -1.15 16 10 C 0.01 0.10 2.99 -92.63 -0.28 -0.18 16 11 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 12 C 0.47 6.95 7.17 36.01 0.26 7.21 16 13 O -0.51 -8.50 15.61 -18.75 -0.29 -8.80 16 14 O -0.34 -5.35 8.60 -42.02 -0.36 -5.71 16 15 C 0.07 1.08 5.84 37.16 0.22 1.30 16 16 C 0.06 0.94 6.33 37.16 0.24 1.18 16 17 O -0.38 -8.24 10.30 -38.79 -0.40 -8.64 16 18 C 0.17 4.03 4.76 36.01 0.17 4.20 16 19 C -0.52 -14.64 9.99 -34.44 -0.34 -14.99 16 20 H 0.08 2.51 8.06 -52.48 -0.42 2.08 16 21 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 22 N -0.89 -26.38 13.96 55.43 0.77 -25.60 16 23 Si 0.87 20.54 27.47 -169.99 -4.67 15.87 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.19 3.09 7.03 -52.48 -0.37 2.72 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.90 7.77 -51.93 -0.40 0.50 16 37 H 0.08 1.21 8.13 -51.94 -0.42 0.79 16 38 H 0.08 0.97 8.13 -51.93 -0.42 0.54 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 41 H 0.00 0.08 7.20 -51.93 -0.37 -0.29 16 42 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -33.38 359.01 -6.95 -40.34 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.62 Total: 0.03 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.94 Total: -2.34 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.92 Total: -36.16 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -1.05 Total: -23.15 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.38 -6.95 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815242249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.746 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds