Wall clock time and date at job start Tue Mar 31 2020 09:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47608 * 2 1 4 4 C 1.52996 * 109.47380 * 239.99827 * 2 1 3 5 5 O 1.42904 * 109.47144 * 305.00065 * 4 2 1 6 6 N 1.46908 * 109.47247 * 119.99701 * 2 1 3 7 7 C 1.46902 * 110.99722 * 296.04385 * 6 2 1 8 8 N 1.36597 * 110.99697 * 59.99708 * 6 2 1 9 9 C 1.34783 * 119.99778 * 120.00105 * 8 6 2 10 10 O 1.21284 * 119.99976 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00059 * 179.97438 * 9 8 6 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 H 1.08997 * 109.47149 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46983 * 300.00502 * 1 2 3 29 29 H 1.08998 * 109.47202 * 59.99884 * 1 2 3 30 30 H 1.08994 * 109.47341 * 64.99556 * 4 2 1 31 31 H 1.09001 * 109.47518 * 185.00400 * 4 2 1 32 32 H 0.96693 * 114.00354 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.46860 * 183.94953 * 7 6 2 34 34 H 1.08992 * 109.47295 * 303.95021 * 7 6 2 35 35 H 1.09002 * 109.47004 * 63.95542 * 7 6 2 36 36 H 0.97001 * 120.00411 * 300.00418 * 8 6 2 37 37 H 1.09004 * 109.46756 * 60.00007 * 11 9 8 38 38 H 1.08998 * 109.46908 * 300.00650 * 11 9 8 39 39 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 40 40 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 41 41 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 42 42 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3094 6 7 2.0196 -0.6925 1.1995 7 6 1.6274 0.0262 2.4192 8 7 1.5816 -1.9859 1.2311 9 6 2.4711 -2.9984 1.2465 10 8 3.6604 -2.7611 1.2328 11 6 1.9879 -4.4254 1.2820 12 6 3.1725 -5.3568 1.2939 13 6 3.7070 -5.8101 0.1013 14 6 4.7943 -6.6644 0.1080 15 6 5.3542 -7.0624 1.3063 16 6 4.8165 -6.6137 2.5053 17 8 5.3608 -7.0080 3.6847 18 6 6.3435 -7.9293 3.6277 19 1 6.7197 -8.2591 2.6706 20 6 6.8712 -8.4534 4.7980 21 7 6.4126 -8.0521 5.9638 22 14 8.2322 -9.7304 4.7190 23 1 8.5670 -10.0098 3.2994 24 1 9.4362 -9.2145 5.4187 25 1 7.7759 -10.9816 5.3759 26 6 3.7237 -5.7563 2.4952 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.7516 -0.1585 -2.1369 31 1 3.1263 -0.7995 -1.2055 32 1 1.7505 -2.5465 -2.0775 33 1 2.0615 -0.4687 3.2880 34 1 1.9887 1.0532 2.3679 35 1 0.5409 0.0272 2.5068 36 1 0.6304 -2.1758 1.2424 37 1 1.3776 -4.6243 0.4009 38 1 1.3916 -4.5849 2.1804 39 1 3.2741 -5.4961 -0.8371 40 1 5.2091 -7.0169 -0.8247 41 1 6.2066 -7.7256 1.3109 42 1 6.7815 -8.4190 6.7825 43 1 3.3057 -5.4023 3.4260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823940507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:44 Heat of formation + Delta-G solvation = -43.779922 kcal Electronic energy + Delta-G solvation = -25543.388238 eV Core-core repulsion = 21784.225735 eV Total energy + Delta-G solvation = -3759.162504 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.17563 -38.96260 -37.85810 -36.43973 -36.02152 -32.79430 -32.25799 -31.79992 -30.33099 -29.05499 -27.29171 -26.75943 -25.21979 -24.66669 -21.88748 -21.44372 -20.47482 -19.89614 -17.83643 -17.61822 -17.18592 -16.71201 -16.44636 -16.13938 -15.05915 -14.79732 -14.65339 -14.35768 -14.28569 -13.96692 -13.74597 -13.40620 -13.34020 -13.29215 -13.18271 -12.49489 -12.46224 -12.32275 -12.24205 -11.72448 -11.65081 -11.38584 -11.18895 -11.15526 -10.73697 -10.65798 -10.50225 -10.35674 -10.20216 -9.44784 -9.22713 -8.94735 -8.85047 -8.74610 -7.93445 -7.09672 -6.34985 -3.93618 2.19504 2.51131 2.89464 3.14005 3.19131 3.19798 3.25525 4.04732 4.05791 4.17006 4.58112 4.68039 4.74794 5.00428 5.05013 5.09340 5.16138 5.20092 5.23335 5.31719 5.40333 5.43521 5.50239 5.60325 5.63554 5.69003 5.82142 5.86635 5.89579 6.05485 6.29802 6.46061 6.58236 6.78189 7.04215 7.18397 7.40101 7.44647 7.47800 7.48676 7.55659 7.67298 7.95720 8.10668 8.86136 9.11106 9.83513 10.83639 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.027148 B = 0.002899 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.153937 B = 9656.607959 C =10264.599692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.062 3.938 3 H 0.101 0.899 4 C 0.088 3.912 5 O -0.564 6.564 6 N -0.289 5.289 7 C 0.003 3.997 8 N -0.571 5.571 9 C 0.541 3.459 10 O -0.505 6.505 11 C -0.088 4.088 12 C -0.029 4.029 13 C -0.193 4.193 14 C -0.076 4.076 15 C -0.231 4.231 16 C 0.155 3.845 17 O -0.181 6.181 18 C -0.389 4.389 19 H 0.091 0.909 20 C 0.037 3.963 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.174 4.174 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.376 0.624 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.377 0.623 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.268 0.732 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.769 14.242 -13.331 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.047 4.047 3 H 0.119 0.881 4 C 0.010 3.990 5 O -0.369 6.369 6 N -0.105 5.105 7 C -0.145 4.145 8 N -0.319 5.319 9 C 0.327 3.673 10 O -0.376 6.376 11 C -0.129 4.129 12 C -0.030 4.030 13 C -0.212 4.212 14 C -0.095 4.095 15 C -0.251 4.251 16 C 0.102 3.898 17 O -0.085 6.085 18 C -0.465 4.465 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.501 5.501 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.194 4.194 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.223 0.777 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.216 0.784 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.078 0.922 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.633 14.603 -12.312 22.900 hybrid contribution -0.400 -0.573 -0.583 0.910 sum -13.033 14.029 -12.895 23.086 Atomic orbital electron populations 1.22298 0.96528 1.02996 1.02256 1.22387 0.94020 0.97860 0.90393 0.88075 1.22066 0.97685 0.83887 0.95386 1.86456 1.72541 1.27243 1.50638 1.63056 1.53794 0.92020 1.01620 1.22923 0.99041 0.99390 0.93150 1.45232 1.08194 1.00286 1.78210 1.20431 0.86152 0.85436 0.75253 1.90722 1.16069 1.84471 1.46356 1.20517 0.97816 0.90229 1.04346 1.18656 0.95366 0.95914 0.93029 1.20327 1.00641 1.04197 0.96080 1.20665 0.95419 0.96703 0.96679 1.21160 1.04325 1.07423 0.92164 1.19273 0.91359 0.92673 0.86514 1.83977 1.47295 1.52550 1.24713 1.21359 1.12769 1.17844 0.94542 0.89120 1.25264 0.98822 0.98316 0.94208 1.70052 1.41072 1.41665 0.97312 0.85663 0.79638 0.79461 0.78741 1.19148 1.20234 1.20235 1.19959 0.98446 1.03751 0.97217 0.91385 0.92470 0.91794 0.93585 0.92493 0.77682 0.90405 0.90224 0.94684 0.78414 0.88316 0.88760 0.87966 0.87607 0.85716 0.92229 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 8.44 37.15 0.31 -0.95 16 2 C 0.06 0.53 2.95 -67.71 -0.20 0.33 16 3 H 0.10 0.73 8.12 -51.93 -0.42 0.31 16 4 C 0.09 0.78 6.80 37.16 0.25 1.04 16 5 O -0.56 -5.13 10.31 -35.23 -0.36 -5.50 16 6 N -0.29 -3.32 4.52 -114.01 -0.51 -3.84 16 7 C 0.00 0.03 9.58 60.07 0.58 0.60 16 8 N -0.57 -6.78 2.90 31.22 0.09 -6.69 16 9 C 0.54 8.42 7.07 -10.98 -0.08 8.35 16 10 O -0.51 -10.53 16.36 5.55 0.09 -10.44 16 11 C -0.09 -1.24 5.83 -29.04 -0.17 -1.41 16 12 C -0.03 -0.55 4.37 -104.65 -0.46 -1.00 16 13 C -0.19 -3.57 9.70 -39.53 -0.38 -3.95 16 14 C -0.08 -1.50 10.04 -39.61 -0.40 -1.90 16 15 C -0.23 -5.37 9.17 -39.40 -0.36 -5.73 16 16 C 0.15 3.98 6.65 -39.11 -0.26 3.72 16 17 O -0.18 -5.43 9.76 0.05 0.00 -5.43 16 18 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 19 H 0.09 2.45 5.21 -52.49 -0.27 2.18 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.87 -26.17 13.67 55.48 0.76 -25.41 16 22 Si 0.94 21.22 29.55 -169.99 -5.02 16.20 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 C -0.17 -3.95 9.65 -39.39 -0.38 -4.33 16 27 H 0.07 0.53 6.23 -51.93 -0.32 0.21 16 28 H 0.06 0.36 6.58 -51.93 -0.34 0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.38 2.36 9.12 45.56 0.42 2.77 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 35 H 0.03 0.26 6.61 -51.93 -0.34 -0.08 16 36 H 0.38 3.61 7.30 -185.16 -1.35 2.25 16 37 H 0.10 1.11 8.09 -51.93 -0.42 0.69 16 38 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 39 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.11 2.50 8.06 -52.49 -0.42 2.07 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -36.61 357.75 -7.21 -43.82 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.29 Total: 7.17 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.35 Total: -15.28 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.33 Total: -35.94 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.27 Total: -21.37 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.61 -7.21 -43.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823940507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.043 kcal (2) G-P(sol) polarization free energy of solvation -36.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds