Wall clock time and date at job start Tue Mar 31 2020 09:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46902 * 2 1 4 4 C 1.52997 * 109.46882 * 120.00097 * 2 1 3 5 5 O 1.42900 * 109.47638 * 54.99911 * 4 2 1 6 6 N 1.46897 * 109.46880 * 239.99684 * 2 1 3 7 7 C 1.46907 * 110.99978 * 68.95560 * 6 2 1 8 8 N 1.36597 * 111.00296 * 305.00422 * 6 2 1 9 9 C 1.34783 * 119.99778 * 239.99793 * 8 6 2 10 10 O 1.21284 * 119.99976 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00059 * 179.97438 * 9 8 6 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 H 1.09001 * 109.47144 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46615 * 299.99968 * 1 2 3 29 29 H 1.08996 * 109.47099 * 60.00300 * 1 2 3 30 30 H 1.09008 * 109.47023 * 174.99905 * 4 2 1 31 31 H 1.09002 * 109.47447 * 294.99609 * 4 2 1 32 32 H 0.96692 * 114.00417 * 179.97438 * 5 4 2 33 33 H 1.08999 * 109.46746 * 296.04581 * 7 6 2 34 34 H 1.09004 * 109.46888 * 56.04236 * 7 6 2 35 35 H 1.08999 * 109.47218 * 176.04345 * 7 6 2 36 36 H 0.97001 * 120.00411 * 60.00106 * 8 6 2 37 37 H 1.09004 * 109.46756 * 60.00007 * 11 9 8 38 38 H 1.08998 * 109.46908 * 300.00650 * 11 9 8 39 39 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 40 40 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 42 42 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.4702 -2.0304 1.3095 6 7 2.0197 -0.6926 -1.1994 7 6 1.7308 0.0857 -2.4115 8 7 1.4932 -1.9499 -1.2879 9 6 2.3088 -3.0228 -1.2986 10 8 3.5103 -2.8719 -1.2291 11 6 1.7280 -4.4100 -1.3957 12 6 2.8434 -5.4233 -1.3876 13 6 3.4165 -5.8295 -2.5793 14 6 4.4405 -6.7587 -2.5759 15 6 4.8987 -7.2793 -1.3815 16 6 4.3217 -6.8779 -0.1840 17 8 4.7658 -7.3922 0.9912 18 6 5.6849 -8.3761 0.9203 19 1 6.0946 -8.6644 -0.0365 20 6 6.1041 -9.0177 2.0758 21 7 5.6047 -8.6669 3.2411 22 14 7.3770 -10.3814 1.9775 23 1 8.7371 -9.7989 2.1045 24 1 7.1492 -11.3516 3.0784 25 1 7.2567 -11.0776 0.6713 26 6 3.2926 -5.9449 -0.1907 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.1264 -0.7995 1.2056 31 1 1.7517 -0.1583 2.1370 32 1 1.7505 -2.5464 2.0777 33 1 0.6518 0.1670 -2.5424 34 1 2.1612 1.0824 -2.3144 35 1 2.1651 -0.4150 -3.2768 36 1 0.5323 -2.0706 -1.3432 37 1 1.1598 -4.5019 -2.3214 38 1 1.0693 -4.5883 -0.5459 39 1 3.0634 -5.4200 -3.5142 40 1 4.8856 -7.0742 -3.5079 41 1 5.7020 -8.0012 -1.3792 42 1 5.8977 -9.1161 4.0494 43 1 2.8445 -5.6276 0.7393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823940509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:48 Heat of formation + Delta-G solvation = -44.418179 kcal Electronic energy + Delta-G solvation = -25653.958068 eV Core-core repulsion = 21894.767888 eV Total energy + Delta-G solvation = -3759.190180 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.14812 -38.95436 -37.82206 -36.38510 -35.96650 -32.73157 -32.25769 -31.78958 -30.36669 -29.05734 -27.20983 -26.74859 -25.22849 -24.64968 -21.87451 -21.42044 -20.46777 -19.88439 -17.73305 -17.57493 -17.18714 -16.71990 -16.42820 -16.05351 -15.07573 -14.74218 -14.65795 -14.35913 -14.24642 -13.90124 -13.69436 -13.52713 -13.32386 -13.20115 -13.06455 -12.54739 -12.47224 -12.30233 -12.23214 -11.73001 -11.59115 -11.38508 -11.18040 -11.08801 -10.72294 -10.67795 -10.50286 -10.37524 -10.04286 -9.43860 -9.23289 -8.95075 -8.84215 -8.74722 -7.93019 -7.09912 -6.35685 -3.94178 2.19730 2.51183 2.89342 3.15480 3.19265 3.19319 3.24141 4.04446 4.15721 4.22403 4.62402 4.68578 4.79487 5.02645 5.06577 5.09443 5.17495 5.21497 5.28076 5.30749 5.44123 5.45510 5.55400 5.62386 5.66273 5.69904 5.79877 5.89339 5.93383 6.05873 6.29712 6.46429 6.59453 6.78397 7.04370 7.18031 7.40325 7.48286 7.48947 7.55372 7.62487 7.67213 7.95746 8.10080 8.86706 9.10561 9.82808 10.82881 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021340 B = 0.003187 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.756489 B = 8784.083264 C = 9660.735380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.062 3.938 3 H 0.100 0.900 4 C 0.088 3.912 5 O -0.565 6.565 6 N -0.289 5.289 7 C 0.004 3.996 8 N -0.573 5.573 9 C 0.542 3.458 10 O -0.504 6.504 11 C -0.088 4.088 12 C -0.029 4.029 13 C -0.196 4.196 14 C -0.076 4.076 15 C -0.231 4.231 16 C 0.154 3.846 17 O -0.181 6.181 18 C -0.389 4.389 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.866 5.866 22 Si 0.939 3.061 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.171 4.171 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.381 0.619 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.377 0.623 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.268 0.732 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.109 15.923 -7.850 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.046 4.046 3 H 0.118 0.882 4 C 0.010 3.990 5 O -0.370 6.370 6 N -0.104 5.104 7 C -0.144 4.144 8 N -0.321 5.321 9 C 0.328 3.672 10 O -0.375 6.375 11 C -0.129 4.129 12 C -0.030 4.030 13 C -0.215 4.215 14 C -0.094 4.094 15 C -0.251 4.251 16 C 0.101 3.899 17 O -0.085 6.085 18 C -0.465 4.465 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.502 5.502 22 Si 0.764 3.236 23 H -0.200 1.200 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.191 4.191 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.228 0.772 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.215 0.785 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.078 0.922 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.001 16.140 -7.832 21.044 hybrid contribution -0.413 -0.520 0.380 0.765 sum -11.414 15.620 -7.452 20.732 Atomic orbital electron populations 1.22280 0.96477 1.03095 1.02159 1.22377 0.94079 0.97649 0.90501 0.88206 1.22058 0.97725 0.84090 0.95171 1.86413 1.72461 1.27120 1.51041 1.63027 1.52136 0.93493 1.01790 1.22909 0.99501 0.98671 0.93310 1.45251 1.07998 1.00832 1.77999 1.20413 0.86915 0.84551 0.75301 1.90717 1.14769 1.85794 1.46219 1.20520 0.97950 0.90252 1.04216 1.18653 0.95913 0.95323 0.93077 1.20357 1.01597 1.03265 0.96256 1.20665 0.95894 0.96101 0.96747 1.21160 1.05016 1.06624 0.92280 1.19281 0.91767 0.92366 0.86467 1.83971 1.52648 1.47369 1.24555 1.21309 1.17769 1.12177 0.95292 0.89190 1.25250 0.98541 0.98478 0.94279 1.70038 1.41572 1.40672 0.97891 0.85738 0.79812 0.79657 0.78361 1.19963 1.20349 1.19248 1.19931 0.99982 1.01965 0.97187 0.91203 0.91693 0.92709 0.92509 0.93611 0.77198 0.94828 0.90251 0.90623 0.78486 0.88924 0.88190 0.88012 0.87577 0.85723 0.92202 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 8.43 37.16 0.31 -1.05 16 2 C 0.06 0.58 2.91 -67.71 -0.20 0.38 16 3 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 4 C 0.09 0.92 6.84 37.16 0.25 1.18 16 5 O -0.56 -6.46 10.41 -35.23 -0.37 -6.83 16 6 N -0.29 -3.33 4.48 -114.00 -0.51 -3.84 16 7 C 0.00 0.04 9.67 60.07 0.58 0.62 16 8 N -0.57 -6.82 3.07 31.22 0.10 -6.72 16 9 C 0.54 8.47 6.99 -10.98 -0.08 8.39 16 10 O -0.50 -10.52 16.36 5.55 0.09 -10.43 16 11 C -0.09 -1.25 5.83 -29.04 -0.17 -1.42 16 12 C -0.03 -0.55 4.37 -104.65 -0.46 -1.01 16 13 C -0.20 -3.68 9.70 -39.53 -0.38 -4.06 16 14 C -0.08 -1.51 10.04 -39.61 -0.40 -1.91 16 15 C -0.23 -5.37 9.17 -39.40 -0.36 -5.73 16 16 C 0.15 3.94 6.65 -39.11 -0.26 3.68 16 17 O -0.18 -5.38 9.76 0.05 0.00 -5.38 16 18 C -0.39 -11.25 9.49 30.89 0.29 -10.95 16 19 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.87 -25.95 13.67 55.48 0.76 -25.19 16 22 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.17 -3.83 9.65 -39.39 -0.38 -4.21 16 27 H 0.07 0.60 6.15 -51.93 -0.32 0.28 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.36 6.73 -51.93 -0.35 0.01 16 30 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.38 3.62 9.12 45.56 0.42 4.04 16 33 H 0.03 0.24 6.75 -51.93 -0.35 -0.12 16 34 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.38 3.58 7.17 -185.16 -1.33 2.25 16 37 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 38 H 0.10 1.25 8.08 -51.93 -0.42 0.83 16 39 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -36.23 357.94 -7.17 -43.40 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.27 Total: 8.63 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -1.34 Total: -15.12 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.34 Total: -35.75 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.28 Total: -22.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.23 -7.17 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823940509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.021 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds