Wall clock time and date at job start Tue Mar 31 2020 09:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47062 * 2 1 4 4 C 1.52995 * 109.46779 * 239.99936 * 2 1 3 5 5 O 1.42900 * 109.47510 * 304.99570 * 4 2 1 6 6 N 1.46902 * 109.47127 * 119.99926 * 2 1 3 7 7 C 1.46904 * 110.99746 * 296.04814 * 6 2 1 8 8 N 1.36597 * 110.99852 * 59.99869 * 6 2 1 9 9 C 1.34780 * 119.99746 * 120.00295 * 8 6 2 10 10 O 1.21282 * 120.00129 * 359.97438 * 9 8 6 11 11 C 1.50702 * 119.99933 * 180.02562 * 9 8 6 12 12 C 1.50701 * 109.47242 * 179.97438 * 11 9 8 13 13 C 1.38299 * 119.93217 * 269.72899 * 12 11 9 14 14 C 1.38093 * 120.06953 * 179.72477 * 13 12 11 15 15 C 1.38883 * 119.92808 * 0.56550 * 14 13 12 16 16 O 1.35754 * 120.06438 * 179.68623 * 15 14 13 17 17 C 1.34826 * 116.99724 * 174.49160 * 16 15 14 18 18 H 1.07998 * 120.00100 * 5.04739 * 17 16 15 19 19 C 1.38654 * 119.99970 * 185.05457 * 17 16 15 20 20 N 1.31557 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46896 * 90.00233 * 21 19 17 23 23 H 1.48505 * 109.47024 * 209.99798 * 21 19 17 24 24 H 1.48496 * 109.47185 * 330.00029 * 21 19 17 25 25 C 1.38871 * 119.86468 * 359.70509 * 15 14 13 26 26 C 1.38101 * 119.93230 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.47062 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46971 * 300.00000 * 1 2 3 29 29 H 1.08993 * 109.47105 * 60.00145 * 1 2 3 30 30 H 1.08995 * 109.47369 * 65.00440 * 4 2 1 31 31 H 1.09009 * 109.47037 * 185.00137 * 4 2 1 32 32 H 0.96696 * 114.00446 * 180.02562 * 5 4 2 33 33 H 1.09003 * 109.46388 * 183.95596 * 7 6 2 34 34 H 1.09004 * 109.47031 * 303.95039 * 7 6 2 35 35 H 1.08989 * 109.47535 * 63.95402 * 7 6 2 36 36 H 0.97002 * 120.00363 * 299.99540 * 8 6 2 37 37 H 1.09002 * 109.47056 * 59.99417 * 11 9 8 38 38 H 1.09001 * 109.46884 * 299.99904 * 11 9 8 39 39 H 1.08005 * 119.96050 * 359.97425 * 13 12 11 40 40 H 1.07999 * 120.03730 * 180.26989 * 14 13 12 41 41 H 0.97002 * 120.00021 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.03853 * 179.97438 * 25 15 14 43 43 H 1.07997 * 119.96732 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3094 6 7 2.0197 -0.6925 1.1995 7 6 1.6273 0.0261 2.4192 8 7 1.5817 -1.9859 1.2310 9 6 2.4712 -2.9984 1.2465 10 8 3.6604 -2.7611 1.2319 11 6 1.9880 -4.4255 1.2807 12 6 3.1726 -5.3569 1.2916 13 6 3.7025 -5.8135 0.0986 14 6 4.7916 -6.6625 0.1051 15 6 5.3474 -7.0672 1.3118 16 8 6.4141 -7.9068 1.3216 17 6 6.9755 -8.1692 2.5191 18 1 6.5258 -7.7842 3.4223 19 6 8.1302 -8.9334 2.5908 20 7 8.6778 -9.4027 1.4906 21 14 8.9084 -9.2963 4.2498 22 1 8.3396 -10.5534 4.7989 23 1 10.3765 -9.4477 4.0854 24 1 8.6277 -8.1766 5.1839 25 6 4.8096 -6.6114 2.5083 26 6 3.7239 -5.7580 2.4950 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.7516 -0.1583 -2.1369 31 1 3.1263 -0.7995 -1.2056 32 1 1.7505 -2.5464 -2.0776 33 1 2.0616 -0.4688 3.2879 34 1 1.9886 1.0532 2.3679 35 1 0.5410 0.0271 2.5068 36 1 0.6305 -2.1758 1.2424 37 1 1.3783 -4.6239 0.3992 38 1 1.3912 -4.5855 2.1787 39 1 3.2665 -5.5024 -0.8393 40 1 5.2076 -7.0153 -0.8270 41 1 9.4859 -9.9370 1.5408 42 1 5.2394 -6.9246 3.4483 43 1 3.3049 -5.4035 3.4251 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823959086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:52 Heat of formation + Delta-G solvation = -44.230870 kcal Electronic energy + Delta-G solvation = -25433.427284 eV Core-core repulsion = 21674.245226 eV Total energy + Delta-G solvation = -3759.182058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.18196 -38.96185 -37.87855 -36.45987 -36.02205 -32.79373 -32.33804 -31.30256 -30.18604 -30.02147 -27.17981 -26.53976 -25.21836 -24.52069 -21.86271 -21.70726 -20.33633 -19.86004 -17.88040 -17.80353 -17.27885 -16.77961 -16.47044 -16.16533 -14.86864 -14.76378 -14.57373 -14.39723 -14.21073 -13.92995 -13.67736 -13.44956 -13.39919 -13.31394 -13.17391 -12.59703 -12.53219 -12.36801 -12.30907 -11.77034 -11.65565 -11.37693 -11.18504 -11.16292 -10.73918 -10.65118 -10.52042 -10.35471 -10.19929 -9.43008 -9.22667 -8.96414 -8.87694 -8.73258 -8.03530 -7.05069 -6.36474 -3.94735 2.33986 2.36476 2.88739 3.13984 3.18507 3.20024 3.24695 4.04335 4.05352 4.15123 4.56583 4.67163 4.72793 4.98438 5.02119 5.14621 5.16258 5.18963 5.22241 5.38256 5.39508 5.44685 5.47721 5.52282 5.59352 5.62029 5.81174 5.84939 5.86857 5.96958 6.32360 6.52716 6.55346 6.81604 7.02760 7.15723 7.34910 7.44994 7.47054 7.49091 7.54932 7.67802 7.95663 8.09299 8.86157 9.09586 9.81222 10.81950 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028192 B = 0.002756 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.952001 B =10158.218730 C =10560.687895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.062 3.938 3 H 0.101 0.899 4 C 0.088 3.912 5 O -0.564 6.564 6 N -0.290 5.290 7 C 0.004 3.996 8 N -0.573 5.573 9 C 0.536 3.464 10 O -0.507 6.507 11 C -0.074 4.074 12 C -0.164 4.164 13 C -0.058 4.058 14 C -0.192 4.192 15 C 0.156 3.844 16 O -0.180 6.180 17 C -0.389 4.389 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.865 5.865 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.232 4.232 26 C -0.057 4.057 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.377 0.623 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.377 0.623 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.795 17.677 -2.489 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.046 4.046 3 H 0.119 0.881 4 C 0.010 3.990 5 O -0.369 6.369 6 N -0.105 5.105 7 C -0.144 4.144 8 N -0.321 5.321 9 C 0.323 3.677 10 O -0.378 6.378 11 C -0.115 4.115 12 C -0.166 4.166 13 C -0.076 4.076 14 C -0.211 4.211 15 C 0.103 3.897 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.501 5.501 21 Si 0.765 3.235 22 H -0.200 1.200 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.251 4.251 26 C -0.076 4.076 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.224 0.776 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.215 0.785 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.079 0.921 42 H 0.143 0.857 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.329 17.753 -2.197 24.906 hybrid contribution -0.741 -0.048 0.380 0.834 sum -18.071 17.705 -1.818 25.364 Atomic orbital electron populations 1.22298 0.96545 1.02981 1.02229 1.22384 0.93996 0.97851 0.90415 0.88116 1.22062 0.97717 0.83913 0.95352 1.86446 1.72554 1.27228 1.50694 1.63068 1.53782 0.92133 1.01552 1.22910 0.98980 0.99387 0.93166 1.45315 1.08220 1.00254 1.78276 1.20739 0.86183 0.85696 0.75131 1.90710 1.16158 1.84505 1.46388 1.20340 0.97702 0.89813 1.03654 1.18636 1.00545 1.03732 0.93646 1.20376 0.94980 0.95950 0.96343 1.20147 1.00238 1.04694 0.96060 1.19372 0.88214 0.88876 0.93282 1.83975 1.37665 1.53725 1.33012 1.21321 1.08374 1.33606 0.83275 0.89126 1.25271 0.95698 0.96390 0.99211 1.70043 1.19972 1.32885 1.27161 0.85727 0.78430 0.79060 0.80299 1.19953 1.20311 1.19203 1.21097 1.00564 1.05052 0.98424 1.20515 0.95051 0.95820 0.96199 0.91389 0.92533 0.91774 0.93569 0.92471 0.77595 0.90585 0.90269 0.94740 0.78514 0.88889 0.89544 0.87413 0.86657 0.92137 0.85675 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 8.44 37.16 0.31 -0.90 16 2 C 0.06 0.52 2.95 -67.71 -0.20 0.32 16 3 H 0.10 0.71 8.12 -51.93 -0.42 0.29 16 4 C 0.09 0.78 6.80 37.15 0.25 1.04 16 5 O -0.56 -5.16 10.31 -35.23 -0.36 -5.52 16 6 N -0.29 -3.18 4.52 -114.01 -0.51 -3.70 16 7 C 0.00 0.03 9.58 60.07 0.58 0.61 16 8 N -0.57 -6.45 2.90 31.22 0.09 -6.36 16 9 C 0.54 7.96 7.07 -10.98 -0.08 7.88 16 10 O -0.51 -10.23 16.36 5.56 0.09 -10.14 16 11 C -0.07 -0.98 5.83 -29.03 -0.17 -1.15 16 12 C -0.16 -2.96 4.38 -104.57 -0.46 -3.41 16 13 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 14 C -0.19 -4.29 9.99 -39.40 -0.39 -4.68 16 15 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 16 O -0.18 -5.35 9.76 0.05 0.00 -5.35 16 17 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 18 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.87 -26.10 13.67 55.48 0.76 -25.34 16 21 Si 0.94 21.20 29.55 -169.99 -5.02 16.18 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 C -0.23 -5.36 9.17 -39.40 -0.36 -5.72 16 26 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 27 H 0.07 0.52 6.23 -51.93 -0.32 0.19 16 28 H 0.06 0.34 6.58 -51.93 -0.34 -0.01 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.38 2.44 9.12 45.56 0.42 2.85 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.03 0.24 6.60 -51.94 -0.34 -0.11 16 36 H 0.38 3.39 7.30 -185.16 -1.35 2.04 16 37 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 38 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 42 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 43 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -36.29 357.74 -7.21 -43.50 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.29 Total: 6.67 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.35 Total: -15.33 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.33 Total: -35.39 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.27 Total: -21.01 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.29 -7.21 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823959086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.734 kcal (2) G-P(sol) polarization free energy of solvation -36.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds