Wall clock time and date at job start Tue Mar 31 2020 09:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47388 * 2 1 4 4 C 1.52998 * 109.47357 * 240.00145 * 2 1 3 5 5 C 1.50696 * 109.47174 * 175.00043 * 4 2 1 6 6 C 1.34514 * 125.78867 * 89.71848 * 5 4 2 7 7 C 1.41389 * 106.83751 * 179.88952 * 6 5 4 8 8 C 1.34507 * 106.84368 * 0.36943 * 7 6 5 9 9 O 1.34307 * 125.78934 * 270.02490 * 5 4 2 10 10 N 1.46497 * 109.47063 * 120.00068 * 2 1 3 11 11 C 1.34785 * 120.00212 * 275.00077 * 10 2 1 12 12 O 1.21583 * 119.99543 * 0.02562 * 11 10 2 13 13 N 1.34776 * 119.99769 * 180.02562 * 11 10 2 14 14 C 1.47419 * 125.65218 * 0.02641 * 13 11 10 15 15 C 1.54905 * 104.83258 * 155.83904 * 14 13 11 16 16 C 1.55153 * 101.58432 * 37.00633 * 15 14 13 17 17 O 1.42899 * 110.72123 * 83.04292 * 16 15 14 18 18 C 1.50702 * 110.72079 * 206.13591 * 16 15 14 19 19 H 1.08002 * 120.00299 * 357.56389 * 18 16 15 20 20 C 1.37884 * 119.99942 * 177.27948 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.47319 * 125.61066 * 180.16584 * 13 11 10 27 27 H 1.08994 * 109.47184 * 299.99576 * 1 2 3 28 28 H 1.08998 * 109.46797 * 59.99826 * 1 2 3 29 29 H 1.09001 * 109.46863 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46832 * 295.00081 * 4 2 1 31 31 H 1.08998 * 109.47076 * 54.99529 * 4 2 1 32 32 H 1.07997 * 126.58552 * 0.02562 * 6 5 4 33 33 H 1.08002 * 126.57595 * 180.16625 * 7 6 5 34 34 H 1.07997 * 125.79465 * 179.75434 * 8 7 6 35 35 H 0.97000 * 120.00134 * 95.00080 * 10 2 1 36 36 H 1.08994 * 110.36742 * 36.99340 * 14 13 11 37 37 H 1.09008 * 110.36374 * 274.67201 * 14 13 11 38 38 H 1.09004 * 111.00291 * 278.93328 * 15 14 13 39 39 H 1.09005 * 111.00807 * 155.08431 * 15 14 13 40 40 H 0.96699 * 114.00083 * 182.43988 * 17 16 15 41 41 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 42 42 H 1.09004 * 110.06766 * 61.74679 * 26 13 11 43 43 H 1.08999 * 109.85130 * 300.49036 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 6 4.4155 -1.4820 -0.7703 7 6 5.7105 -1.0007 -1.0709 8 6 5.5508 0.1360 -1.7720 9 8 4.2352 0.3649 -1.9154 10 7 2.0183 -0.6906 1.1961 11 6 2.1470 -0.0183 2.3572 12 8 1.8574 1.1613 2.4119 13 7 2.5968 -0.6536 3.4575 14 6 2.9827 -2.0744 3.5318 15 6 3.9666 -2.1562 4.7255 16 6 3.3395 -1.1400 5.7162 17 8 2.2877 -1.7494 6.4674 18 6 4.3906 -0.5744 6.6363 19 1 5.4107 -0.9228 6.5698 20 6 4.0510 0.3922 7.5592 21 7 2.8088 0.8164 7.6402 22 14 5.3553 1.0988 8.6944 23 1 6.4242 1.7362 7.8841 24 1 4.7383 2.1131 9.5864 25 1 5.9404 0.0085 9.5156 26 6 2.7811 -0.0430 4.7854 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1369 32 1 4.1742 -2.3757 -0.2140 33 1 6.6481 -1.4566 -0.7887 34 1 6.3456 0.7593 -2.1544 35 1 2.2490 -1.6318 1.1526 36 1 3.4774 -2.3819 2.6106 37 1 2.1070 -2.6961 3.7188 38 1 4.9681 -1.8450 4.4283 39 1 3.9813 -3.1593 5.1518 40 1 1.8378 -1.1464 7.0749 41 1 2.5699 1.4962 8.2897 42 1 1.8257 0.3165 5.1677 43 1 3.4899 0.7823 4.7182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825737705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:25 Heat of formation + Delta-G solvation = -64.794934 kcal Electronic energy + Delta-G solvation = -26256.507934 eV Core-core repulsion = 22496.434151 eV Total energy + Delta-G solvation = -3760.073783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.59876 -39.71703 -37.66316 -35.94187 -34.23311 -33.00037 -32.17493 -31.85725 -30.24004 -29.40553 -27.70801 -26.33554 -25.01804 -22.85853 -21.83108 -21.47047 -20.44943 -19.64631 -19.43443 -17.65448 -17.34079 -17.03383 -16.26834 -15.86812 -15.23431 -15.00913 -14.84396 -14.40228 -14.16723 -13.67022 -13.43591 -13.04322 -12.91725 -12.87017 -12.83697 -12.77283 -12.38054 -12.12048 -11.98066 -11.69475 -11.60390 -11.41934 -11.07506 -11.00198 -10.79204 -10.64040 -10.49858 -10.14849 -9.93770 -9.56102 -9.30623 -8.84434 -8.64970 -8.47794 -8.29700 -7.72947 -6.26444 -4.34870 1.68614 2.59498 2.91898 3.14301 3.24876 3.29754 3.31854 3.78932 4.28133 4.45244 4.50766 4.72323 4.88892 4.98948 5.01458 5.14916 5.23499 5.39614 5.40660 5.49142 5.67205 5.70835 5.77881 5.79974 5.85954 5.97123 6.03432 6.06489 6.16342 6.25517 6.45706 6.52698 6.74371 6.81825 6.91266 7.01471 7.08891 7.28705 7.34907 7.66943 7.75661 8.05187 8.57084 8.68703 9.17936 9.32713 9.42362 10.81426 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017101 B = 0.003837 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.941488 B = 7296.335802 C = 7890.080018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.164 3.836 3 H 0.090 0.910 4 C -0.047 4.047 5 C -0.008 4.008 6 C -0.204 4.204 7 C -0.210 4.210 8 C -0.046 4.046 9 O -0.176 6.176 10 N -0.745 5.745 11 C 0.718 3.282 12 O -0.597 6.597 13 N -0.630 5.630 14 C 0.105 3.895 15 C -0.116 4.116 16 C 0.248 3.752 17 O -0.586 6.586 18 C -0.538 4.538 19 H 0.066 0.934 20 C 0.071 3.929 21 N -0.894 5.894 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.123 3.877 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.200 0.800 35 H 0.391 0.609 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.384 0.616 41 H 0.271 0.729 42 H 0.062 0.938 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -5.678 -17.836 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.058 3.942 3 H 0.108 0.892 4 C -0.085 4.085 5 C -0.058 4.058 6 C -0.223 4.223 7 C -0.229 4.229 8 C -0.114 4.114 9 O -0.073 6.073 10 N -0.402 5.402 11 C 0.420 3.580 12 O -0.476 6.476 13 N -0.367 5.367 14 C -0.019 4.019 15 C -0.154 4.154 16 C 0.208 3.792 17 O -0.395 6.395 18 C -0.577 4.577 19 H 0.084 0.916 20 C -0.132 4.132 21 N -0.533 5.533 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C 0.001 3.999 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.217 0.783 35 H 0.225 0.775 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.235 0.765 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.173 -4.895 -18.224 18.871 hybrid contribution 0.897 0.363 1.061 1.436 sum 0.724 -4.532 -17.163 17.766 Atomic orbital electron populations 1.22202 0.94918 1.02146 1.02872 1.20688 0.93738 0.97461 0.82272 0.89208 1.20499 0.85811 1.02907 0.99273 1.22275 0.94564 0.89266 0.99695 1.21519 0.92287 1.02709 1.05755 1.21826 0.98875 0.98204 1.04018 1.23971 0.82973 0.99774 1.04632 1.83998 1.18182 1.43978 1.61106 1.45171 1.72833 1.13325 1.08832 1.15491 0.78440 0.84555 0.79551 1.90876 1.58010 1.14426 1.84311 1.48011 1.67449 1.11100 1.10156 1.22204 0.98126 0.82945 0.98585 1.22716 0.97544 1.00727 0.94369 1.19482 0.85361 0.86821 0.87545 1.86083 1.51738 1.42765 1.58920 1.21477 0.95534 1.22213 1.18454 0.91630 1.25067 0.95849 0.95429 0.96868 1.69640 1.17193 1.30442 1.36060 0.86463 0.81404 0.78738 0.80311 1.20044 1.21057 1.19999 1.22907 1.00890 0.97734 0.78342 0.91334 0.91780 0.92453 0.88405 0.88526 0.83819 0.83575 0.78316 0.77537 0.92780 0.92104 0.90613 0.90648 0.76512 0.91912 0.91967 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.48 37.16 0.35 -1.45 16 2 C 0.16 2.05 2.56 -67.93 -0.17 1.88 16 3 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.05 -0.44 5.29 -27.89 -0.15 -0.58 16 5 C -0.01 -0.09 6.33 -35.63 -0.23 -0.32 16 6 C -0.20 -2.38 10.68 -39.70 -0.42 -2.80 16 7 C -0.21 -2.39 10.91 -39.70 -0.43 -2.82 16 8 C -0.05 -0.50 12.09 29.41 0.36 -0.15 16 9 O -0.18 -2.24 10.65 5.68 0.06 -2.18 16 10 N -0.74 -10.97 4.64 -58.68 -0.27 -11.24 16 11 C 0.72 14.60 8.46 -86.91 -0.73 13.87 16 12 O -0.60 -14.56 16.33 5.29 0.09 -14.47 16 13 N -0.63 -13.15 3.33 -176.00 -0.59 -13.74 16 14 C 0.10 1.83 6.57 -2.53 -0.02 1.81 16 15 C -0.12 -2.29 6.23 -24.59 -0.15 -2.45 16 16 C 0.25 6.03 0.85 -89.94 -0.08 5.95 16 17 O -0.59 -14.76 13.08 -35.23 -0.46 -15.22 16 18 C -0.54 -14.17 8.11 -34.44 -0.28 -14.45 16 19 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 20 C 0.07 1.87 5.27 -17.82 -0.09 1.78 16 21 N -0.89 -24.03 10.96 55.43 0.61 -23.42 16 22 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 C 0.12 3.05 5.39 -2.90 -0.02 3.03 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.20 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.39 4.82 7.08 -40.82 -0.29 4.53 16 36 H 0.05 0.76 7.30 -51.93 -0.38 0.38 16 37 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.38 9.97 7.24 45.56 0.33 10.30 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.06 1.68 8.00 -51.93 -0.42 1.26 16 43 H 0.06 1.71 7.81 -51.93 -0.41 1.30 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -31.99 358.36 -7.99 -39.98 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -5.74 Total: 16.00 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.07 Total: 3.31 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.25 Total: -48.41 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.31 Total: -31.87 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.99 -7.99 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825737705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.812 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds