Wall clock time and date at job start Tue Mar 31 2020 09:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47275 * 2 1 4 4 C 1.36495 * 124.77422 * 89.97226 * 3 2 1 5 5 C 1.50693 * 125.41901 * 359.96394 * 4 3 2 6 6 C 1.34357 * 109.16142 * 179.97438 * 4 3 2 7 7 C 1.46906 * 106.35508 * 0.02562 * 6 4 3 8 8 C 1.46444 * 127.06006 * 180.02562 * 7 6 4 9 9 O 1.21348 * 120.00081 * 180.02562 * 8 7 6 10 10 C 1.50702 * 120.00049 * 0.02562 * 8 7 6 11 11 N 1.46501 * 109.47156 * 180.02562 * 10 8 7 12 12 C 1.36938 * 120.00209 * 270.00273 * 11 10 8 13 13 H 1.07996 * 119.99611 * 16.21290 * 12 11 10 14 14 C 1.38804 * 120.00117 * 196.22281 * 12 11 10 15 15 N 1.31621 * 120.00154 * 22.12139 * 14 12 11 16 16 Si 1.86802 * 119.99952 * 202.12216 * 14 12 11 17 17 H 1.48503 * 109.47263 * 89.99804 * 16 14 12 18 18 H 1.48502 * 109.47413 * 209.99836 * 16 14 12 19 19 H 1.48506 * 109.47106 * 329.99963 * 16 14 12 20 20 C 1.46501 * 120.00115 * 89.99902 * 11 10 8 21 21 C 1.50702 * 109.47040 * 84.01087 * 20 11 10 22 22 O 1.20823 * 119.99950 * 0.02562 * 21 20 11 23 23 O 1.34228 * 119.99956 * 179.97438 * 21 20 11 24 24 C 1.34490 * 124.77713 * 270.28420 * 3 2 1 25 25 C 1.50696 * 125.91886 * 0.04574 * 24 3 2 26 26 H 1.08995 * 109.47254 * 300.00332 * 1 2 3 27 27 H 1.09001 * 109.46837 * 60.00250 * 1 2 3 28 28 H 1.09000 * 109.47137 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47254 * 239.99668 * 2 1 3 30 30 H 1.09001 * 109.46837 * 119.99750 * 2 1 3 31 31 H 1.08995 * 109.47245 * 270.01373 * 5 4 3 32 32 H 1.09002 * 109.47221 * 30.01438 * 5 4 3 33 33 H 1.09001 * 109.47460 * 150.01724 * 5 4 3 34 34 H 1.07993 * 126.82064 * 180.02562 * 6 4 3 35 35 H 1.08995 * 109.47022 * 60.00141 * 10 8 7 36 36 H 1.09003 * 109.46840 * 299.99866 * 10 8 7 37 37 H 0.97003 * 119.99693 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.47179 * 204.01224 * 20 11 10 39 39 H 1.09006 * 109.47088 * 324.01013 * 20 11 10 40 40 H 0.96705 * 117.00054 * 180.02562 * 23 21 20 41 41 H 1.09001 * 109.46879 * 270.17387 * 25 24 3 42 42 H 1.08995 * 109.47472 * 30.17580 * 25 24 3 43 43 H 1.09003 * 109.46756 * 150.17532 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2774 2.1154 1.1212 5 6 2.1058 1.6344 2.5390 6 6 2.7095 3.3351 0.7596 7 6 2.7163 3.3529 -0.7094 8 6 3.1109 4.4649 -1.5767 9 8 3.0662 4.3391 -2.7828 10 6 3.5726 5.7655 -0.9714 11 7 3.9071 6.7100 -2.0402 12 6 5.1811 6.7550 -2.5403 13 1 5.8653 5.9416 -2.3489 14 6 5.5931 7.8460 -3.2930 15 7 4.9685 8.9988 -3.1775 16 14 7.0341 7.6782 -4.4698 17 1 6.5366 7.2597 -5.8050 18 1 7.7312 8.9840 -4.5883 19 1 7.9800 6.6572 -3.9518 20 6 2.8786 7.6064 -2.5740 21 6 2.7719 8.8272 -1.6968 22 8 3.4823 8.9374 -0.7258 23 8 1.8882 9.7926 -1.9950 24 6 2.2690 2.1063 -1.1047 25 6 2.0953 1.6393 -2.5269 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.0957 1.8613 2.8798 32 1 2.2698 0.5576 2.5797 33 1 2.8279 2.1365 3.1829 34 1 2.9950 4.1420 1.4180 35 1 4.4536 5.5869 -0.3550 36 1 2.7761 6.1822 -0.3549 37 1 5.2563 9.7611 -3.7039 38 1 3.1494 7.9085 -3.5857 39 1 1.9198 7.0883 -2.5939 40 1 1.8565 10.5568 -1.4031 41 1 3.0212 1.1807 -2.8743 42 1 1.2881 0.9084 -2.5734 43 1 1.8512 2.4911 -3.1617 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830408380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:05 Heat of formation + Delta-G solvation = -57.576055 kcal Electronic energy + Delta-G solvation = -25956.494513 eV Core-core repulsion = 22196.733764 eV Total energy + Delta-G solvation = -3759.760749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30299 -38.70514 -37.98106 -35.30141 -34.22930 -34.15803 -32.57396 -31.32335 -29.71533 -29.19505 -27.90101 -26.48711 -24.64127 -23.76749 -22.47915 -21.26180 -20.10407 -19.03266 -17.91765 -16.80011 -16.55725 -16.37951 -15.42427 -15.26937 -15.11995 -14.89219 -14.28824 -14.04025 -13.89078 -13.80569 -13.50947 -13.31764 -13.08553 -13.05201 -12.93500 -12.67604 -12.43521 -12.30610 -12.09634 -11.69465 -11.63371 -11.56016 -11.24998 -11.15920 -10.89209 -10.71623 -10.51644 -10.09844 -9.91946 -9.85341 -9.31270 -8.85184 -8.40066 -8.37336 -7.77520 -6.92755 -5.81741 -3.12841 1.91210 2.49328 2.81206 3.45818 3.52057 3.53976 3.85994 3.96576 4.34877 4.40376 4.61663 4.65500 4.68757 4.84956 4.93645 5.06139 5.14690 5.24297 5.25291 5.36225 5.43143 5.49234 5.51817 5.65403 5.68598 5.77290 5.84261 6.04319 6.10994 6.21738 6.31777 6.47078 6.55865 6.69517 7.02065 7.05284 7.15649 7.29407 7.37269 7.79122 7.92600 8.25041 8.64679 9.12124 9.51002 9.80239 10.22414 11.30020 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.003871 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.038493 B = 7232.393473 C = 7945.654116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 N -0.438 5.438 4 C -0.005 4.005 5 C -0.080 4.080 6 C -0.150 4.150 7 C -0.249 4.249 8 C 0.392 3.608 9 O -0.454 6.454 10 C 0.114 3.886 11 N -0.553 5.553 12 C -0.243 4.243 13 H 0.077 0.923 14 C 0.000 4.000 15 N -0.907 5.907 16 Si 0.910 3.090 17 H -0.287 1.287 18 H -0.293 1.293 19 H -0.280 1.280 20 C 0.193 3.807 21 C 0.477 3.523 22 O -0.517 6.517 23 O -0.543 6.543 24 C 0.091 3.909 25 C -0.091 4.091 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.256 0.744 38 H 0.115 0.885 39 H 0.050 0.950 40 H 0.380 0.620 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.401 -16.837 8.208 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.116 5.116 4 C -0.111 4.111 5 C -0.137 4.137 6 C -0.173 4.173 7 C -0.258 4.258 8 C 0.267 3.733 9 O -0.330 6.330 10 C -0.014 4.014 11 N -0.271 5.271 12 C -0.372 4.372 13 H 0.095 0.905 14 C -0.197 4.197 15 N -0.552 5.552 16 Si 0.740 3.260 17 H -0.214 1.214 18 H -0.220 1.220 19 H -0.205 1.205 20 C 0.064 3.936 21 C 0.317 3.683 22 O -0.403 6.403 23 O -0.354 6.354 24 C -0.025 4.025 25 C -0.148 4.148 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.164 0.836 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.133 0.867 39 H 0.068 0.932 40 H 0.235 0.765 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.231 -17.401 7.533 21.546 hybrid contribution 0.866 0.607 0.046 1.059 sum -9.364 -16.794 7.579 20.668 Atomic orbital electron populations 1.22163 0.94385 1.02790 1.03388 1.21816 0.95559 0.81215 1.04182 1.43570 1.51272 1.11481 1.05299 1.20092 1.09741 0.93006 0.88308 1.20280 1.02587 1.00728 0.90128 1.21887 1.05504 0.96328 0.93624 1.21509 1.14411 0.95683 0.94171 1.23115 0.73183 0.88601 0.88397 1.90427 1.42263 1.83366 1.16905 1.21018 1.00334 0.88757 0.91284 1.43535 1.07784 1.36786 1.38980 1.19217 0.89091 1.02000 1.26896 0.90484 1.24775 0.99003 0.94377 1.01593 1.69872 1.44068 0.99778 1.41501 0.86154 0.81550 0.76690 0.81581 1.21364 1.22010 1.20532 1.20171 0.90667 0.85264 0.97520 1.25375 0.74449 0.84258 0.84183 1.90494 1.41133 1.78802 1.29892 1.84642 1.60262 1.32341 1.58124 1.20851 1.01378 0.91432 0.88798 1.20521 1.01640 1.02768 0.89866 0.91783 0.91727 0.90876 0.89323 0.89300 0.91438 0.92277 0.90203 0.83620 0.89852 0.91257 0.93376 0.86731 0.93219 0.76498 0.90766 0.92377 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.24 37.16 0.38 -0.74 16 2 C 0.09 0.72 6.07 -4.04 -0.02 0.70 16 3 N -0.44 -5.20 2.68 -107.62 -0.29 -5.49 16 4 C 0.00 -0.06 6.84 -81.89 -0.56 -0.62 16 5 C -0.08 -0.65 10.05 36.00 0.36 -0.29 16 6 C -0.15 -2.18 10.58 -37.44 -0.40 -2.57 16 7 C -0.25 -4.26 6.29 -103.09 -0.65 -4.90 16 8 C 0.39 7.97 7.19 -31.01 -0.22 7.75 16 9 O -0.45 -10.39 14.97 5.50 0.08 -10.31 16 10 C 0.11 2.48 5.68 -5.19 -0.03 2.45 16 11 N -0.55 -14.29 1.52 -175.98 -0.27 -14.56 16 12 C -0.24 -6.87 9.66 -15.06 -0.15 -7.02 16 13 H 0.08 2.16 7.92 -52.49 -0.42 1.75 16 14 C 0.00 -0.01 4.86 -17.43 -0.08 -0.09 16 15 N -0.91 -26.60 9.31 55.49 0.52 -26.09 16 16 Si 0.91 22.63 29.61 -169.99 -5.03 17.60 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C 0.19 4.82 5.49 -5.19 -0.03 4.79 16 21 C 0.48 11.91 6.55 36.01 0.24 12.14 16 22 O -0.52 -14.42 16.89 -18.75 -0.32 -14.74 16 23 O -0.54 -11.47 13.42 -39.25 -0.53 -12.00 16 24 C 0.09 1.33 6.94 -81.44 -0.56 0.77 16 25 C -0.09 -1.16 9.27 36.00 0.33 -0.83 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.60 7.51 -51.93 -0.39 0.21 16 30 H 0.09 0.54 6.88 -51.93 -0.36 0.18 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.39 6.92 -51.93 -0.36 0.04 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 35 H 0.08 1.78 8.04 -51.93 -0.42 1.37 16 36 H 0.07 1.41 8.07 -51.93 -0.42 1.00 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.11 3.10 6.35 -51.93 -0.33 2.77 16 39 H 0.05 1.11 8.12 -51.93 -0.42 0.69 16 40 H 0.38 6.35 9.10 45.56 0.41 6.77 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 43 H 0.10 1.51 6.53 -51.93 -0.34 1.17 16 LS Contribution 363.60 15.07 5.48 5.48 Total: -1.00 -36.00 363.60 -7.27 -43.26 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.52 Total: 5.31 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: -1.39 Total: 11.53 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.04 Total: -46.14 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.76 Total: -37.04 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.00 -7.27 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830408380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.314 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds