Wall clock time and date at job start Tue Mar 31 2020 09:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08990 * 109.46865 * 2 1 4 4 C 1.50702 * 109.47059 * 240.00227 * 2 1 3 5 5 C 1.35162 * 125.60789 * 106.08395 * 4 2 1 6 6 C 1.40314 * 107.12747 * 179.97438 * 5 4 2 7 7 C 1.36642 * 106.69815 * 0.02562 * 6 5 4 8 8 C 1.46474 * 125.99322 * 179.97438 * 7 6 5 9 9 O 1.21616 * 119.99907 * 359.97438 * 8 7 6 10 10 O 1.34896 * 119.99848 * 179.97438 * 8 7 6 11 11 O 1.33918 * 125.60820 * 286.05795 * 4 2 1 12 12 N 1.46902 * 109.46708 * 120.00254 * 2 1 3 13 13 C 1.46955 * 111.00019 * 299.83868 * 12 2 1 14 14 C 1.53046 * 109.36633 * 176.81528 * 13 12 2 15 15 N 1.46960 * 109.36431 * 58.39688 * 14 13 12 16 16 C 1.46895 * 110.99850 * 176.81214 * 15 14 13 17 17 C 1.50699 * 109.47445 * 57.74013 * 16 15 14 18 18 H 1.08005 * 119.99567 * 5.07936 * 17 16 15 19 19 C 1.37878 * 120.00473 * 185.08503 * 17 16 15 20 20 N 1.31511 * 119.99805 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99931 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47268 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46982 * 120.00111 * 21 19 17 24 24 H 1.48504 * 109.46724 * 239.99914 * 21 19 17 25 25 C 1.46955 * 110.88307 * 300.68332 * 15 14 13 26 26 C 1.46959 * 110.99485 * 176.04014 * 12 2 1 27 27 H 1.08994 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47088 * 300.00052 * 1 2 3 29 29 H 1.09007 * 109.46727 * 60.00020 * 1 2 3 30 30 H 1.07995 * 126.43999 * 0.24258 * 5 4 2 31 31 H 1.08001 * 126.65372 * 180.02562 * 6 5 4 32 32 H 0.96706 * 116.99902 * 179.97438 * 10 8 7 33 33 H 1.09004 * 109.49043 * 296.78178 * 13 12 2 34 34 H 1.08998 * 109.48968 * 56.84544 * 13 12 2 35 35 H 1.09007 * 109.48528 * 298.43691 * 14 13 12 36 36 H 1.08994 * 109.49039 * 178.36940 * 14 13 12 37 37 H 1.09008 * 109.46939 * 177.73498 * 16 15 14 38 38 H 1.09001 * 109.47612 * 297.73559 * 16 15 14 39 39 H 0.97000 * 119.99874 * 180.02562 * 20 19 17 40 40 H 1.08995 * 109.49107 * 299.35398 * 25 15 14 41 41 H 1.08998 * 109.48875 * 179.28223 * 25 15 14 42 42 H 1.08994 * 109.49192 * 303.15373 * 26 12 2 43 43 H 1.09003 * 109.48982 * 63.20068 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.5817 -0.1161 -2.3131 6 6 2.9097 -1.1341 -3.2214 7 6 2.5386 -2.3137 -2.6399 8 6 2.6900 -3.6475 -3.2260 9 8 3.1851 -3.7741 -4.3295 10 8 2.2803 -4.7353 -2.5416 11 8 2.0084 -2.0342 -1.4310 12 7 2.0196 -0.6926 1.1995 13 6 1.5516 -0.0240 2.4215 14 6 2.0152 -0.8191 3.6443 15 7 3.4812 -0.9214 3.6319 16 6 3.9708 -1.6138 4.8313 17 6 3.3466 -2.9832 4.9108 18 1 2.7202 -3.3386 4.1059 19 6 3.5752 -3.7823 6.0109 20 7 4.3383 -3.3497 6.9907 21 14 2.8009 -5.4795 6.1095 22 1 1.9921 -5.7263 4.8888 23 1 3.8692 -6.5057 6.2121 24 1 1.9252 -5.5551 7.3065 25 6 3.9493 -1.5899 2.4098 26 6 3.4856 -0.7948 1.1869 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 2.7425 0.9428 -2.4512 31 1 3.3668 -1.0096 -4.1919 32 1 2.4006 -5.5942 -2.9695 33 1 1.9641 0.9840 2.4654 34 1 0.4629 0.0283 2.4132 35 1 1.5807 -1.8184 3.6144 36 1 1.6939 -0.3095 4.5527 37 1 5.0551 -1.7114 4.7773 38 1 3.7013 -1.0397 5.7178 39 1 4.4994 -3.9120 7.7644 40 1 3.5368 -2.5978 2.3659 41 1 5.0380 -1.6422 2.4181 42 1 3.8069 -1.3044 0.2786 43 1 3.9201 0.2045 1.2164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833547751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:30 Heat of formation + Delta-G solvation = -56.688461 kcal Electronic energy + Delta-G solvation = -25983.994663 eV Core-core repulsion = 22224.272403 eV Total energy + Delta-G solvation = -3759.722260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.99055 -40.13631 -38.95827 -36.40882 -35.91957 -33.38800 -32.77118 -31.45263 -30.65486 -29.30637 -27.30203 -25.37760 -24.60920 -22.99036 -22.26161 -21.77849 -21.37614 -20.30934 -19.13865 -18.65052 -17.79073 -16.88884 -16.46953 -16.18792 -15.56881 -15.31069 -14.76069 -14.44330 -14.20881 -14.09102 -13.98161 -13.77957 -13.38568 -13.24017 -13.14912 -12.95886 -12.28065 -12.08930 -12.00703 -11.86844 -11.59016 -11.53593 -11.20740 -11.08011 -10.83321 -10.72269 -10.54130 -10.36492 -10.27964 -10.07661 -9.80885 -9.52919 -8.84897 -8.42673 -8.23515 -7.18443 -6.01954 -4.10598 0.61653 1.99409 2.21343 2.66842 3.00426 3.27814 3.36119 3.41223 3.83084 4.31930 4.42473 4.60715 4.87560 4.92823 4.98498 5.05580 5.26170 5.28669 5.29872 5.40914 5.49714 5.54404 5.65052 5.65868 5.75323 5.85562 5.91660 6.00808 6.02408 6.09867 6.13229 6.27620 6.57668 6.68131 6.76875 6.85368 7.14233 7.15756 7.32242 7.53180 7.57446 7.90846 8.04094 8.26833 8.30387 9.00265 9.56529 11.03240 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.003945 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.664310 B = 7096.050402 C = 8318.314552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.151 3.849 3 H 0.076 0.924 4 C 0.065 3.935 5 C -0.231 4.231 6 C -0.099 4.099 7 C -0.079 4.079 8 C 0.575 3.425 9 O -0.502 6.502 10 O -0.500 6.500 11 O -0.127 6.127 12 N -0.529 5.529 13 C 0.057 3.943 14 C 0.065 3.935 15 N -0.544 5.544 16 C 0.187 3.813 17 C -0.547 4.547 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.065 3.935 26 C 0.060 3.940 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.418 0.582 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.026 0.974 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.327 6.829 -18.699 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.043 3.957 3 H 0.093 0.907 4 C 0.010 3.990 5 C -0.250 4.250 6 C -0.119 4.119 7 C -0.130 4.130 8 C 0.419 3.581 9 O -0.392 6.392 10 O -0.311 6.311 11 O -0.020 6.020 12 N -0.255 5.255 13 C -0.071 4.071 14 C -0.064 4.064 15 N -0.268 5.268 16 C 0.061 3.939 17 C -0.586 4.586 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.064 4.064 26 C -0.068 4.068 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.177 0.823 31 H 0.181 0.819 32 H 0.277 0.723 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.283 6.883 -18.408 20.633 hybrid contribution -0.123 -1.553 -0.232 1.575 sum -6.406 5.329 -18.640 20.417 Atomic orbital electron populations 1.21930 0.92318 1.03769 1.02475 1.20353 0.96444 0.93884 0.85049 0.90663 1.22937 0.98320 0.80419 0.97325 1.21589 1.07756 1.01152 0.94529 1.21922 0.99234 0.89799 1.00905 1.20616 1.11676 0.92708 0.87968 1.18863 0.74198 0.82999 0.82001 1.90989 1.42383 1.86150 1.19724 1.84725 1.77191 1.18203 1.50986 1.84235 1.61766 1.24683 1.31321 1.62258 1.11436 1.51087 1.00760 1.22350 0.99467 0.96027 0.89232 1.21916 0.89994 0.99423 0.95035 1.62709 1.08788 1.51717 1.03601 1.19736 0.95574 0.91782 0.86777 1.21806 1.30812 1.01614 1.04386 0.92211 1.24956 0.95016 0.98200 0.95594 1.69954 1.37660 1.37133 1.08343 0.86602 0.79231 0.84578 0.78031 1.19726 1.20994 1.20980 1.21905 0.99248 0.96507 0.88750 1.22248 0.86051 0.99401 0.99063 0.90983 0.90843 0.91814 0.82255 0.81904 0.72273 0.94451 0.90565 0.93009 0.91120 0.95540 0.94710 0.92911 0.93338 0.91356 0.91652 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.95 37.16 0.33 -1.09 16 2 C 0.15 1.72 2.54 -68.86 -0.17 1.54 16 3 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 4 C 0.06 0.77 4.43 -35.40 -0.16 0.62 16 5 C -0.23 -2.32 10.75 -39.90 -0.43 -2.75 16 6 C -0.10 -1.06 10.62 -39.38 -0.42 -1.48 16 7 C -0.08 -1.02 7.18 -36.84 -0.26 -1.28 16 8 C 0.57 7.14 8.30 34.05 0.28 7.42 16 9 O -0.50 -6.89 17.65 -19.35 -0.34 -7.24 16 10 O -0.50 -5.32 13.44 -42.47 -0.57 -5.89 16 11 O -0.13 -1.79 10.51 4.74 0.05 -1.74 16 12 N -0.53 -7.80 4.57 -227.87 -1.04 -8.84 16 13 C 0.06 0.83 5.32 -3.77 -0.02 0.81 16 14 C 0.07 1.24 5.22 -3.77 -0.02 1.22 16 15 N -0.54 -11.53 4.92 -235.91 -1.16 -12.69 16 16 C 0.19 4.78 5.15 -4.98 -0.03 4.75 16 17 C -0.55 -15.00 7.66 -34.44 -0.26 -15.26 16 18 H 0.06 1.66 5.83 -52.48 -0.31 1.35 16 19 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 20 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 21 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.06 1.27 5.33 -3.77 -0.02 1.25 16 26 C 0.06 0.96 5.34 -3.76 -0.02 0.93 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.64 6.34 -51.93 -0.33 0.32 16 29 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 30 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.42 2.19 9.11 45.56 0.42 2.60 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.96 6.15 -51.93 -0.32 0.64 16 35 H 0.05 1.12 6.55 -51.93 -0.34 0.78 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.03 0.72 8.10 -51.92 -0.42 0.30 16 38 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.05 1.08 6.86 -51.93 -0.36 0.72 16 41 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 42 H 0.07 1.02 6.73 -51.93 -0.35 0.67 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -32.52 352.65 -8.69 -41.21 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.36 Total: 0.37 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.29 Total: -1.59 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -1.47 Total: -46.99 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.86 Total: -14.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.52 -8.69 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833547751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.474 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds