Wall clock time and date at job start Tue Mar 31 2020 09:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08990 * 109.46865 * 2 1 4 4 C 1.50702 * 109.47059 * 240.00227 * 2 1 3 5 5 C 1.35162 * 125.60789 * 106.08395 * 4 2 1 6 6 C 1.40314 * 107.12747 * 179.97438 * 5 4 2 7 7 C 1.36642 * 106.69815 * 0.02562 * 6 5 4 8 8 C 1.46474 * 125.99322 * 179.97438 * 7 6 5 9 9 O 1.21616 * 119.99907 * 359.97438 * 8 7 6 10 10 O 1.34896 * 119.99848 * 179.97438 * 8 7 6 11 11 O 1.33918 * 125.60820 * 286.05795 * 4 2 1 12 12 N 1.46902 * 109.46708 * 120.00254 * 2 1 3 13 13 C 1.46955 * 111.00019 * 299.83868 * 12 2 1 14 14 C 1.53046 * 109.36633 * 176.81528 * 13 12 2 15 15 N 1.46960 * 109.36431 * 58.39688 * 14 13 12 16 16 C 1.46895 * 110.99850 * 176.81214 * 15 14 13 17 17 C 1.50699 * 109.47445 * 57.74013 * 16 15 14 18 18 H 1.08005 * 119.99567 * 5.07936 * 17 16 15 19 19 C 1.37878 * 120.00473 * 185.08503 * 17 16 15 20 20 N 1.31511 * 119.99805 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99931 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47268 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46982 * 120.00111 * 21 19 17 24 24 H 1.48504 * 109.46724 * 239.99914 * 21 19 17 25 25 C 1.46955 * 110.88307 * 300.68332 * 15 14 13 26 26 C 1.46959 * 110.99485 * 176.04014 * 12 2 1 27 27 H 1.08994 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47088 * 300.00052 * 1 2 3 29 29 H 1.09007 * 109.46727 * 60.00020 * 1 2 3 30 30 H 1.07995 * 126.43999 * 0.24258 * 5 4 2 31 31 H 1.08001 * 126.65372 * 180.02562 * 6 5 4 32 32 H 0.96706 * 116.99902 * 179.97438 * 10 8 7 33 33 H 1.09004 * 109.49043 * 296.78178 * 13 12 2 34 34 H 1.08998 * 109.48968 * 56.84544 * 13 12 2 35 35 H 1.09007 * 109.48528 * 298.43691 * 14 13 12 36 36 H 1.08994 * 109.49039 * 178.36940 * 14 13 12 37 37 H 1.09008 * 109.46939 * 177.73498 * 16 15 14 38 38 H 1.09001 * 109.47612 * 297.73559 * 16 15 14 39 39 H 0.97000 * 119.99874 * 180.02562 * 20 19 17 40 40 H 1.08995 * 109.49107 * 299.35398 * 25 15 14 41 41 H 1.08998 * 109.48875 * 179.28223 * 25 15 14 42 42 H 1.08994 * 109.49192 * 303.15373 * 26 12 2 43 43 H 1.09003 * 109.48982 * 63.20068 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.5817 -0.1161 -2.3131 6 6 2.9097 -1.1341 -3.2214 7 6 2.5386 -2.3137 -2.6399 8 6 2.6900 -3.6475 -3.2260 9 8 3.1851 -3.7741 -4.3295 10 8 2.2803 -4.7353 -2.5416 11 8 2.0084 -2.0342 -1.4310 12 7 2.0196 -0.6926 1.1995 13 6 1.5516 -0.0240 2.4215 14 6 2.0152 -0.8191 3.6443 15 7 3.4812 -0.9214 3.6319 16 6 3.9708 -1.6138 4.8313 17 6 3.3466 -2.9832 4.9108 18 1 2.7202 -3.3386 4.1059 19 6 3.5752 -3.7823 6.0109 20 7 4.3383 -3.3497 6.9907 21 14 2.8009 -5.4795 6.1095 22 1 1.9921 -5.7263 4.8888 23 1 3.8692 -6.5057 6.2121 24 1 1.9252 -5.5551 7.3065 25 6 3.9493 -1.5899 2.4098 26 6 3.4856 -0.7948 1.1869 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 2.7425 0.9428 -2.4512 31 1 3.3668 -1.0096 -4.1919 32 1 2.4006 -5.5942 -2.9695 33 1 1.9641 0.9840 2.4654 34 1 0.4629 0.0283 2.4132 35 1 1.5807 -1.8184 3.6144 36 1 1.6939 -0.3095 4.5527 37 1 5.0551 -1.7114 4.7773 38 1 3.7013 -1.0397 5.7178 39 1 4.4994 -3.9120 7.7644 40 1 3.5368 -2.5978 2.3659 41 1 5.0380 -1.6422 2.4181 42 1 3.8069 -1.3044 0.2786 43 1 3.9201 0.2045 1.2164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833547751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:29 Heat of formation + Delta-G solvation = -81.170830 kcal Electronic energy + Delta-G solvation = -25985.056298 eV Core-core repulsion = 22224.272403 eV Total energy + Delta-G solvation = -3760.783895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.86543 -41.05591 -40.28590 -37.36987 -37.30353 -34.77180 -34.18092 -32.78516 -31.98135 -30.30684 -29.01324 -26.76092 -25.92459 -24.25553 -23.74812 -22.89343 -22.45643 -21.26321 -20.63761 -19.52915 -18.70533 -18.48564 -17.86494 -17.34054 -16.77980 -16.47075 -16.23804 -15.84565 -15.61619 -15.52913 -15.14825 -14.85832 -14.62747 -14.32381 -14.19621 -13.96371 -13.79846 -13.54087 -13.25323 -12.88290 -12.82619 -12.77680 -12.66553 -12.44293 -12.31892 -12.22592 -12.15998 -12.06728 -11.77321 -11.61383 -11.32967 -11.10181 -10.61974 -9.71504 -9.35630 -9.03194 -8.16841 -6.35634 -0.28057 1.17201 1.33891 1.35785 1.39183 1.47852 1.78526 2.20561 2.36312 2.78260 3.08019 3.36038 3.45432 3.83779 3.97574 4.05175 4.11357 4.23582 4.24667 4.42026 4.48575 4.50233 4.54431 4.61727 4.70760 4.77751 4.81139 4.87644 4.98380 5.06584 5.11284 5.21319 5.24855 5.28381 5.31049 5.34153 5.35322 5.72322 5.81407 6.01753 6.02803 6.10651 6.27540 6.50591 6.79961 6.85179 7.35700 8.85828 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.003945 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.664310 B = 7096.050402 C = 8318.314552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.153 3.847 3 H 0.104 0.896 4 C 0.048 3.952 5 C -0.215 4.215 6 C -0.090 4.090 7 C -0.109 4.109 8 C 0.576 3.424 9 O -0.523 6.523 10 O -0.506 6.506 11 O -0.155 6.155 12 N -0.549 5.549 13 C 0.070 3.930 14 C 0.064 3.936 15 N -0.539 5.539 16 C 0.200 3.800 17 C -0.553 4.553 18 H 0.052 0.948 19 C 0.014 3.986 20 N -0.925 5.925 21 Si 0.954 3.046 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.275 1.275 25 C 0.067 3.933 26 C 0.077 3.923 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.193 0.807 31 H 0.182 0.818 32 H 0.438 0.562 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.021 0.979 36 H 0.067 0.933 37 H 0.001 0.999 38 H 0.011 0.989 39 H 0.265 0.735 40 H 0.015 0.985 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 8.157 -20.367 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.045 3.955 3 H 0.121 0.879 4 C -0.006 4.006 5 C -0.234 4.234 6 C -0.110 4.110 7 C -0.159 4.159 8 C 0.422 3.578 9 O -0.415 6.415 10 O -0.320 6.320 11 O -0.050 6.050 12 N -0.275 5.275 13 C -0.058 4.058 14 C -0.064 4.064 15 N -0.263 5.263 16 C 0.073 3.927 17 C -0.592 4.592 18 H 0.070 0.930 19 C -0.185 4.185 20 N -0.565 5.565 21 Si 0.780 3.220 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.200 1.200 25 C -0.062 4.062 26 C -0.051 4.051 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.210 0.790 31 H 0.199 0.801 32 H 0.300 0.700 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.039 0.961 36 H 0.086 0.914 37 H 0.020 0.980 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.417 8.205 -20.095 22.938 hybrid contribution 0.222 -1.958 0.270 1.989 sum -7.195 6.247 -19.824 21.996 Atomic orbital electron populations 1.21931 0.91028 1.02963 1.04180 1.20533 0.97413 0.94560 0.82963 0.87883 1.23262 0.99146 0.79961 0.98258 1.21956 1.05802 1.02451 0.93148 1.22279 0.97949 0.89265 1.01511 1.20906 1.13169 0.93520 0.88260 1.18915 0.73741 0.83394 0.81718 1.90967 1.43538 1.86524 1.20468 1.84695 1.76820 1.19218 1.51279 1.84200 1.62629 1.26056 1.32074 1.62150 1.10456 1.52755 1.02166 1.22219 1.00988 0.95461 0.87098 1.21966 0.88144 0.98612 0.97714 1.62652 1.10393 1.50642 1.02592 1.19397 0.94009 0.91271 0.88021 1.21970 1.30564 1.02483 1.04175 0.92985 1.25761 0.95493 1.02031 0.95257 1.70059 1.38818 1.38681 1.08955 0.85561 0.78454 0.79891 0.78111 1.19640 1.20340 1.20017 1.21897 0.98852 0.95579 0.89893 1.21988 0.87259 0.99239 0.96646 0.93034 0.89722 0.89512 0.78976 0.80096 0.69957 0.92869 0.87881 0.96101 0.91433 0.98036 0.97100 0.92575 0.96617 0.91979 0.91285 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.95 71.98 0.64 -1.66 16 2 C 0.15 2.96 2.54 44.17 0.11 3.07 16 3 H 0.10 1.50 8.12 -2.39 -0.02 1.48 16 4 C 0.05 1.01 4.43 24.98 0.11 1.13 16 5 C -0.21 -3.55 10.75 22.07 0.24 -3.31 16 6 C -0.09 -1.73 10.62 22.40 0.24 -1.50 16 7 C -0.11 -2.69 7.18 24.04 0.17 -2.51 16 8 C 0.58 14.16 8.30 69.97 0.58 14.74 16 9 O -0.52 -14.15 17.65 19.46 0.34 -13.80 16 10 O -0.51 -10.71 13.44 -56.72 -0.76 -11.47 16 11 O -0.15 -4.23 10.51 -4.86 -0.05 -4.29 16 12 N -0.55 -15.09 4.57 -874.86 -4.00 -19.08 16 13 C 0.07 1.88 5.32 86.31 0.46 2.34 16 14 C 0.06 2.46 5.22 86.31 0.45 2.91 16 15 N -0.54 -23.30 4.92 -900.29 -4.43 -27.73 16 16 C 0.20 10.66 5.15 85.56 0.44 11.10 16 17 C -0.55 -31.31 7.66 25.60 0.20 -31.12 16 18 H 0.05 2.99 5.83 -2.91 -0.02 2.97 16 19 C 0.01 0.80 5.46 84.66 0.46 1.26 16 20 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 21 Si 0.95 44.91 29.54 68.60 2.03 46.93 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 C 0.07 2.67 5.33 86.31 0.46 3.13 16 26 C 0.08 2.33 5.34 86.31 0.46 2.79 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.16 6.34 -2.39 -0.02 1.14 16 29 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.44 4.43 9.11 -74.05 -0.67 3.75 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 2.27 6.15 -2.39 -0.01 2.25 16 35 H 0.02 0.92 6.55 -2.38 -0.02 0.90 16 36 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.00 0.09 8.10 -2.38 -0.02 0.07 16 38 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 39 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.02 0.72 6.86 -2.39 -0.02 0.70 16 41 H 0.06 2.50 8.11 -2.39 -0.02 2.48 16 42 H 0.07 2.06 6.73 -2.39 -0.02 2.05 16 43 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -72.50 352.65 -1.20 -73.70 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.36 Total: 8.55 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.03 Total: 2.38 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -8.14 Total: -102.01 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.47 Total: -29.56 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -72.50 -1.20 -73.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833547751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.470 kcal (2) G-P(sol) polarization free energy of solvation -72.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds