Wall clock time and date at job start Tue Mar 31 2020 09:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47217 * 2 1 4 4 C 1.50705 * 109.47056 * 119.99800 * 2 1 3 5 5 C 1.35164 * 125.61148 * 256.19049 * 4 2 1 6 6 C 1.40312 * 107.12874 * 179.90720 * 5 4 2 7 7 C 1.36638 * 106.69952 * 0.34652 * 6 5 4 8 8 C 1.46475 * 125.99822 * 179.80625 * 7 6 5 9 9 O 1.21626 * 119.99553 * 0.02562 * 8 7 6 10 10 O 1.34891 * 119.99969 * 180.02562 * 8 7 6 11 11 O 1.33915 * 125.60602 * 76.49100 * 4 2 1 12 12 N 1.46892 * 109.47259 * 239.99876 * 2 1 3 13 13 C 1.46956 * 111.00031 * 177.08266 * 12 2 1 14 14 C 1.53048 * 109.38450 * 176.82088 * 13 12 2 15 15 N 1.46958 * 109.36353 * 58.39035 * 14 13 12 16 16 C 1.46903 * 111.00219 * 176.81030 * 15 14 13 17 17 C 1.50701 * 109.47057 * 190.00370 * 16 15 14 18 18 H 1.08001 * 120.00026 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00133 * 180.02562 * 17 16 15 20 20 N 1.31525 * 119.99678 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00511 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46753 * 89.99837 * 21 19 17 23 23 H 1.48494 * 109.47197 * 210.00113 * 21 19 17 24 24 H 1.48502 * 109.46942 * 330.00197 * 21 19 17 25 25 C 1.46959 * 110.88286 * 300.68221 * 15 14 13 26 26 C 1.46957 * 111.01843 * 53.27161 * 12 2 1 27 27 H 1.08999 * 109.46794 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47143 * 300.00196 * 1 2 3 29 29 H 1.09003 * 109.46551 * 60.00053 * 1 2 3 30 30 H 1.08001 * 126.43646 * 0.03256 * 5 4 2 31 31 H 1.08002 * 126.65067 * 180.11800 * 6 5 4 32 32 H 0.96706 * 117.00081 * 179.97438 * 10 8 7 33 33 H 1.09008 * 109.48890 * 56.84708 * 13 12 2 34 34 H 1.08994 * 109.49459 * 296.80338 * 13 12 2 35 35 H 1.09001 * 109.49273 * 178.35797 * 14 13 12 36 36 H 1.08999 * 109.49585 * 298.42859 * 14 13 12 37 37 H 1.09000 * 109.46695 * 310.00235 * 16 15 14 38 38 H 1.09002 * 109.46753 * 70.00223 * 16 15 14 39 39 H 0.97002 * 119.99937 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.48723 * 179.28665 * 25 15 14 41 41 H 1.09000 * 109.48573 * 299.32705 * 25 15 14 42 42 H 1.09001 * 109.47028 * 63.20087 * 26 12 2 43 43 H 1.08990 * 109.50757 * 303.15719 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.5420 -0.1135 2.3310 6 6 2.8835 -1.1325 3.2331 7 6 2.5681 -2.3157 2.6267 8 6 2.7562 -3.6519 3.1963 9 8 3.2327 -3.7774 4.3083 10 8 2.4010 -4.7433 2.4876 11 8 2.0525 -2.0371 1.4113 12 7 2.0197 -0.6925 -1.1993 13 6 3.4871 -0.6519 -1.2687 14 6 3.9603 -1.4496 -2.4861 15 7 3.3626 -0.8822 -3.7028 16 6 3.8527 -1.5744 -4.9023 17 6 3.4179 -0.8185 -6.1314 18 1 2.8354 0.0855 -6.0315 19 6 3.7629 -1.2814 -7.3834 20 7 4.4719 -2.3825 -7.5051 21 14 3.2234 -0.3449 -8.9070 22 1 4.2593 0.6573 -9.2646 23 1 3.0436 -1.2948 -10.0341 24 1 1.9385 0.3475 -8.6333 25 6 1.8952 -0.9232 -3.6338 26 6 1.4220 -0.1255 -2.4163 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 2.6618 0.9484 2.4874 31 1 3.3156 -1.0063 4.2148 32 1 2.5445 -5.6038 2.9051 33 1 3.9062 -1.0889 -0.3623 34 1 3.8184 0.3824 -1.3605 35 1 5.0468 -1.3964 -2.5559 36 1 3.6529 -2.4901 -2.3812 37 1 4.9412 -1.6252 -4.8731 38 1 3.4424 -2.5838 -4.9324 39 1 4.7144 -2.7084 -8.3859 40 1 1.4762 -0.4863 -4.5402 41 1 1.5643 -1.9577 -3.5422 42 1 1.7295 0.9149 -2.5214 43 1 0.3356 -0.1784 -2.3468 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833547752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:34 Heat of formation + Delta-G solvation = -55.863350 kcal Electronic energy + Delta-G solvation = -25632.488061 eV Core-core repulsion = 21872.801581 eV Total energy + Delta-G solvation = -3759.686480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.01879 -40.18632 -39.01660 -36.46296 -35.89038 -33.42602 -32.83195 -31.50554 -30.75942 -29.32318 -27.52463 -25.41953 -24.66180 -23.11172 -22.18225 -21.74480 -21.35399 -20.36188 -19.22164 -18.70024 -17.84322 -16.91059 -16.41841 -16.26295 -15.66756 -15.41531 -14.74471 -14.51162 -14.28121 -14.12240 -13.96669 -13.78288 -13.49464 -13.40448 -13.20474 -13.02404 -12.34512 -12.15706 -11.95186 -11.92305 -11.84376 -11.47254 -11.25342 -11.16896 -10.89426 -10.78932 -10.64980 -10.39864 -10.33290 -10.29475 -9.74206 -9.19710 -8.88815 -8.44760 -8.30100 -7.24955 -6.03211 -4.04894 0.57227 1.95536 2.16720 2.62184 2.95830 3.31268 3.37270 3.40204 3.76330 4.29439 4.41315 4.57028 4.81946 4.87488 4.91935 4.97496 5.19289 5.25677 5.32318 5.36485 5.45137 5.48459 5.60183 5.60978 5.68476 5.76142 5.85445 5.91964 5.98280 6.04602 6.05799 6.15797 6.41722 6.54635 6.65322 6.66189 7.06614 7.09155 7.32281 7.36042 7.52134 7.78580 8.07893 8.19293 8.53625 9.02478 9.59337 11.07674 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022498 B = 0.002978 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.267735 B = 9399.106514 C =10107.717442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.151 3.849 3 H 0.078 0.922 4 C 0.066 3.934 5 C -0.231 4.231 6 C -0.098 4.098 7 C -0.081 4.081 8 C 0.575 3.425 9 O -0.502 6.502 10 O -0.501 6.501 11 O -0.126 6.126 12 N -0.532 5.532 13 C 0.062 3.938 14 C 0.058 3.942 15 N -0.538 5.538 16 C 0.194 3.806 17 C -0.507 4.507 18 H 0.063 0.937 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.067 3.933 26 C 0.055 3.945 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.418 0.582 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.029 0.971 38 H -0.008 1.008 39 H 0.261 0.739 40 H 0.088 0.912 41 H 0.030 0.970 42 H 0.042 0.958 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.794 2.908 20.954 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.042 3.958 3 H 0.095 0.905 4 C 0.011 3.989 5 C -0.251 4.251 6 C -0.118 4.118 7 C -0.131 4.131 8 C 0.419 3.581 9 O -0.392 6.392 10 O -0.312 6.312 11 O -0.020 6.020 12 N -0.258 5.258 13 C -0.066 4.066 14 C -0.071 4.071 15 N -0.264 5.264 16 C 0.069 3.931 17 C -0.546 4.546 18 H 0.081 0.919 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.061 4.061 26 C -0.072 4.072 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.178 0.822 31 H 0.181 0.819 32 H 0.277 0.723 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.010 0.990 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.750 2.879 20.700 21.962 hybrid contribution 0.091 -0.120 -0.448 0.473 sum -6.659 2.759 20.251 21.496 Atomic orbital electron populations 1.21979 0.92253 1.03762 1.02732 1.20331 0.96333 0.93935 0.85159 0.90470 1.22973 0.98318 0.80298 0.97316 1.21600 1.08039 1.01141 0.94274 1.21929 0.99200 0.89767 1.00908 1.20611 1.12397 0.92581 0.87532 1.18862 0.74078 0.83021 0.82098 1.90995 1.42455 1.86345 1.19404 1.84715 1.78357 1.17884 1.50249 1.84225 1.62230 1.24543 1.31000 1.62245 1.07732 1.54547 1.01299 1.22185 0.86364 0.99587 0.98482 1.22035 0.99092 0.96071 0.89924 1.62305 1.05331 1.56160 1.02583 1.19702 0.95725 0.92080 0.85639 1.21142 1.33804 1.09671 0.89986 0.91920 1.24998 0.95342 0.95123 0.99171 1.69966 1.38312 1.21818 1.23666 0.86499 0.79001 0.79500 0.82399 1.20671 1.21331 1.19863 1.21995 0.89694 0.98116 0.96332 1.22375 0.98754 0.97278 0.88802 0.91000 0.91676 0.90636 0.82222 0.81897 0.72267 0.91556 0.93944 0.90940 0.94994 0.95246 0.99005 0.92915 0.89340 0.95158 0.93969 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.72 37.16 0.32 -1.04 16 2 C 0.15 1.65 2.54 -68.86 -0.17 1.47 16 3 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 4 C 0.07 0.75 4.71 -35.40 -0.17 0.58 16 5 C -0.23 -2.22 10.76 -39.90 -0.43 -2.65 16 6 C -0.10 -1.01 10.62 -39.38 -0.42 -1.43 16 7 C -0.08 -0.98 7.18 -36.84 -0.26 -1.25 16 8 C 0.57 6.71 8.30 34.05 0.28 6.99 16 9 O -0.50 -6.57 17.65 -19.36 -0.34 -6.91 16 10 O -0.50 -4.86 13.44 -42.46 -0.57 -5.43 16 11 O -0.13 -1.70 10.67 4.73 0.05 -1.65 16 12 N -0.53 -7.51 4.57 -227.88 -1.04 -8.55 16 13 C 0.06 0.93 5.42 -3.77 -0.02 0.91 16 14 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 15 N -0.54 -11.55 4.70 -235.90 -1.11 -12.66 16 16 C 0.19 5.05 4.72 -4.97 -0.02 5.02 16 17 C -0.51 -14.09 8.47 -34.44 -0.29 -14.38 16 18 H 0.06 1.71 7.13 -52.49 -0.37 1.33 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 21 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.07 1.28 5.43 -3.77 -0.02 1.26 16 26 C 0.06 0.81 5.15 -3.77 -0.02 0.79 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.64 6.25 -51.93 -0.32 0.31 16 30 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.42 1.79 9.11 45.56 0.42 2.21 16 33 H 0.07 0.96 7.08 -51.92 -0.37 0.59 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 38 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.09 1.79 6.79 -51.93 -0.35 1.44 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.97 6.02 -51.93 -0.31 0.66 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -33.08 356.28 -8.78 -41.87 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.51 Total: -1.31 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.34 Total: -1.22 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -1.41 Total: -47.14 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.86 Total: -13.99 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.08 -8.78 -41.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833547752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.997 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds