Wall clock time and date at job start Tue Mar 31 2020 09:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47529 * 2 1 4 4 C 1.53002 * 109.47184 * 239.99998 * 2 1 3 5 5 C 1.50697 * 109.47318 * 165.24084 * 4 2 1 6 6 H 1.07996 * 119.99842 * 354.87537 * 5 4 2 7 7 C 1.37876 * 120.00080 * 174.87829 * 5 4 2 8 8 N 1.31509 * 120.00393 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99867 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47111 * 89.99857 * 9 7 5 11 11 H 1.48502 * 109.47236 * 209.99567 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99849 * 9 7 5 13 13 N 1.46893 * 109.47325 * 120.00167 * 2 1 3 14 14 C 1.46901 * 110.99917 * 68.95319 * 13 2 1 15 15 C 1.46902 * 111.00486 * 192.90981 * 13 2 1 16 16 H 1.08999 * 110.43313 * 308.23201 * 15 13 2 17 17 C 1.54625 * 110.48768 * 185.68345 * 15 13 2 18 18 C 1.54477 * 101.76476 * 216.52395 * 17 15 13 19 19 N 1.46761 * 105.47278 * 25.42089 * 18 17 15 20 20 C 1.46503 * 124.35116 * 162.98633 * 19 18 17 21 21 C 1.53002 * 109.47291 * 89.99570 * 20 19 18 22 22 F 1.39896 * 109.47253 * 60.00217 * 21 20 19 23 23 F 1.39903 * 109.46730 * 180.02562 * 21 20 19 24 24 F 1.39896 * 109.47114 * 300.00062 * 21 20 19 25 25 C 1.34419 * 111.30353 * 342.98043 * 19 18 17 26 26 O 1.21283 * 124.94571 * 180.44880 * 25 19 18 27 27 H 1.09005 * 109.47164 * 54.84466 * 1 2 3 28 28 H 1.09003 * 109.47326 * 294.84909 * 1 2 3 29 29 H 1.09006 * 109.47441 * 174.84425 * 1 2 3 30 30 H 1.09002 * 109.47157 * 285.24259 * 4 2 1 31 31 H 1.09005 * 109.47273 * 45.23871 * 4 2 1 32 32 H 0.96993 * 120.00758 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47100 * 68.03176 * 14 13 2 34 34 H 1.09003 * 109.46828 * 188.02894 * 14 13 2 35 35 H 1.08991 * 109.47577 * 308.02983 * 14 13 2 36 36 H 1.09000 * 110.97275 * 334.64771 * 17 15 13 37 37 H 1.09005 * 110.96571 * 98.37280 * 17 15 13 38 38 H 1.08999 * 110.24581 * 144.41602 * 18 17 15 39 39 H 1.09000 * 110.24798 * 266.33251 * 18 17 15 40 40 H 1.09001 * 109.47054 * 209.99726 * 20 19 18 41 41 H 1.09000 * 109.46837 * 329.99362 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5027 -0.4156 -1.4438 6 1 3.9972 0.2929 -0.7958 7 6 4.2098 -1.0405 -2.4491 8 7 3.6079 -1.9036 -3.2379 9 14 6.0229 -0.6610 -2.6906 10 1 6.8375 -1.5973 -1.8751 11 1 6.3749 -0.8189 -4.1246 12 1 6.2977 0.7346 -2.2641 13 7 2.0196 -0.6925 1.1993 14 6 1.7308 -2.1312 1.1313 15 6 3.4555 -0.4526 1.3966 16 1 4.0079 -0.6790 0.4846 17 6 3.9884 -1.2981 2.5763 18 6 5.0182 -0.3381 3.2120 19 7 4.5732 1.0117 2.8459 20 6 5.0237 2.2386 3.5078 21 6 6.2716 2.7710 2.8004 22 9 5.9674 3.0473 1.4632 23 9 6.7021 3.9423 3.4329 24 9 7.2865 1.8100 2.8588 25 6 3.6992 0.9777 1.8253 26 8 3.1818 1.9518 1.3209 27 1 -0.3634 0.5917 -0.8402 28 1 -0.3634 0.4319 0.9325 29 1 -0.3634 -1.0235 -0.0924 30 1 1.9064 -1.7963 -1.1282 31 1 1.4788 -0.3812 -2.1197 32 1 4.1054 -2.3435 -3.9449 33 1 2.3316 -2.5856 0.3436 34 1 1.9732 -2.5960 2.0870 35 1 0.6733 -2.2796 0.9131 36 1 3.1895 -1.5344 3.2792 37 1 4.4713 -2.2072 2.2178 38 1 5.0220 -0.4529 4.2959 39 1 6.0126 -0.5310 2.8093 40 1 4.2329 2.9874 3.4623 41 1 5.2607 2.0233 4.5497 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839491111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:10 Heat of formation + Delta-G solvation = -170.458815 kcal Electronic energy + Delta-G solvation = -27997.488342 eV Core-core repulsion = 23690.975889 eV Total energy + Delta-G solvation = -4306.512453 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.03963 -47.61427 -47.46577 -40.41430 -37.33426 -36.16879 -33.26633 -32.50093 -30.27622 -28.08725 -27.76305 -26.92783 -24.73871 -23.57772 -22.95432 -20.94312 -19.78670 -18.72800 -18.49124 -18.30600 -17.64691 -16.82800 -16.20790 -16.08708 -15.30107 -14.64256 -14.54702 -14.44709 -14.37670 -13.98192 -13.80747 -13.67052 -13.64802 -13.57541 -13.41699 -12.74191 -12.66970 -12.51255 -12.37004 -12.18042 -11.97750 -11.74181 -11.54780 -11.19372 -11.14702 -10.86195 -10.67878 -10.49797 -10.24328 -10.02866 -9.67925 -9.17237 -8.93642 -8.83928 -8.41693 -7.30603 -6.08481 -4.08654 2.54035 2.74564 3.11596 3.24528 3.33349 3.40213 3.81135 3.94748 4.26697 4.39002 4.57395 4.65162 4.77340 4.95731 5.10932 5.23174 5.25905 5.45142 5.49049 5.86153 5.96800 6.04036 6.08343 6.23138 6.29236 6.36203 6.40222 6.58019 6.65899 6.79399 6.93912 7.04573 7.15962 7.49176 7.58089 7.78552 7.99300 8.04149 8.35988 8.48022 8.96549 9.52684 11.01671 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.006397 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.879895 B = 4375.952224 C = 5456.843623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 H 0.096 0.904 4 C -0.009 4.009 5 C -0.521 4.521 6 H 0.061 0.939 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.512 5.512 14 C 0.020 3.980 15 C 0.025 3.975 16 H 0.147 0.853 17 C -0.128 4.128 18 C 0.106 3.894 19 N -0.629 5.629 20 C 0.092 3.908 21 C 0.428 3.572 22 F -0.171 7.171 23 F -0.187 7.187 24 F -0.185 7.185 25 C 0.538 3.462 26 O -0.501 6.501 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.030 0.970 31 H 0.015 0.985 32 H 0.261 0.739 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.124 0.876 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 2.412 16.489 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.046 4.046 3 H 0.114 0.886 4 C -0.047 4.047 5 C -0.558 4.558 6 H 0.079 0.921 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.237 5.237 14 C -0.128 4.128 15 C -0.086 4.086 16 H 0.163 0.837 17 C -0.166 4.166 18 C -0.017 4.017 19 N -0.366 5.366 20 C -0.034 4.034 21 C 0.371 3.629 22 F -0.152 7.152 23 F -0.168 7.168 24 F -0.166 7.166 25 C 0.327 3.673 26 O -0.373 6.373 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.142 0.858 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.306 3.082 16.449 16.893 hybrid contribution 1.863 -0.040 -1.064 2.146 sum 4.169 3.041 15.385 16.227 Atomic orbital electron populations 1.21774 0.96441 1.00570 1.00342 1.22124 0.93319 1.00069 0.89094 0.88632 1.19804 0.95799 0.96521 0.92576 1.21307 0.95205 1.24282 1.15050 0.92075 1.25000 0.98049 0.95137 0.95740 1.69950 1.36182 1.27563 1.18857 0.86804 0.85819 0.79163 0.77739 1.20471 1.20978 1.19572 1.62418 1.11444 1.10255 1.39607 1.22399 1.01355 0.88801 1.00294 1.23088 0.93713 0.90739 1.01041 0.83693 1.22773 0.98186 0.97961 0.97698 1.22168 0.98725 0.80366 1.00391 1.48160 1.46265 1.05671 1.36477 1.22368 0.93658 0.90120 0.97210 1.21504 0.86751 0.75690 0.78912 1.93281 1.92892 1.93632 1.35407 1.93170 1.91299 1.50257 1.82089 1.93169 1.63426 1.63724 1.96289 1.21113 0.76569 0.92246 0.77381 1.90654 1.50220 1.40676 1.55730 0.93047 0.93523 0.93641 0.95229 0.96631 0.92925 0.93407 0.92793 0.91866 0.89458 0.89239 0.90331 0.90849 0.85763 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.03 37.16 0.34 -2.14 16 2 C 0.06 1.32 2.39 -67.72 -0.16 1.16 16 3 H 0.10 2.30 5.47 -51.93 -0.28 2.02 16 4 C -0.01 -0.23 4.24 -27.88 -0.12 -0.34 16 5 C -0.52 -14.10 6.82 -34.44 -0.23 -14.33 16 6 H 0.06 1.68 5.71 -52.49 -0.30 1.38 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 9 Si 0.88 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.51 -9.61 4.54 -226.93 -1.03 -10.64 16 14 C 0.02 0.33 8.06 60.07 0.48 0.82 16 15 C 0.03 0.46 2.08 -67.72 -0.14 0.32 16 16 H 0.15 3.19 4.20 -51.93 -0.22 2.97 16 17 C -0.13 -1.65 5.54 -25.10 -0.14 -1.79 16 18 C 0.11 1.19 7.22 -3.12 -0.02 1.17 16 19 N -0.63 -8.85 2.81 -172.41 -0.48 -9.33 16 20 C 0.09 1.03 5.91 -4.04 -0.02 1.01 16 21 C 0.43 5.71 3.29 37.16 0.12 5.83 16 22 F -0.17 -3.00 16.95 2.25 0.04 -2.97 16 23 F -0.19 -2.30 17.32 2.25 0.04 -2.26 16 24 F -0.18 -2.50 17.09 2.25 0.04 -2.46 16 25 C 0.54 10.00 7.01 -10.86 -0.08 9.92 16 26 O -0.50 -11.00 15.19 5.56 0.08 -10.92 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.79 6.72 -51.93 -0.35 0.44 16 30 H 0.03 0.77 5.66 -51.93 -0.29 0.47 16 31 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.05 0.93 6.39 -51.93 -0.33 0.60 16 34 H 0.05 0.75 6.59 -51.93 -0.34 0.40 16 35 H 0.06 1.03 6.39 -51.93 -0.33 0.70 16 36 H 0.09 1.02 7.22 -51.93 -0.38 0.65 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 40 H 0.12 1.37 7.93 -51.93 -0.41 0.96 16 41 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 332.56 15.07 5.01 5.01 Total: -1.00 -31.94 332.56 -5.98 -37.93 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.33 Total: 1.01 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.07 Total: 3.27 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.78 Total: -45.01 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.12 Total: -7.68 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.94 -5.98 -37.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839491111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.532 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds