Wall clock time and date at job start Tue Mar 31 2020 09:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46474 * 2 1 4 4 C 1.52996 * 109.46913 * 119.99930 * 2 1 3 5 5 C 1.50703 * 109.46919 * 185.00416 * 4 2 1 6 6 H 1.07994 * 120.00162 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99966 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00246 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00087 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46986 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47206 * 119.99396 * 9 7 5 12 12 H 1.48499 * 109.47205 * 239.99762 * 9 7 5 13 13 N 1.46897 * 109.47268 * 239.99819 * 2 1 3 14 14 C 1.46905 * 111.00042 * 306.07844 * 13 2 1 15 15 C 1.46901 * 110.99945 * 70.03089 * 13 2 1 16 16 H 1.09002 * 110.53830 * 309.21160 * 15 13 2 17 17 C 1.54625 * 110.48832 * 186.60040 * 15 13 2 18 18 C 1.54483 * 101.76716 * 216.52724 * 17 15 13 19 19 N 1.46769 * 105.47188 * 25.40763 * 18 17 15 20 20 C 1.46501 * 124.34659 * 162.98434 * 19 18 17 21 21 C 1.52999 * 109.47456 * 270.03086 * 20 19 18 22 22 F 1.39900 * 109.47304 * 59.99897 * 21 20 19 23 23 F 1.39897 * 109.47316 * 180.02562 * 21 20 19 24 24 F 1.39909 * 109.47119 * 300.00185 * 21 20 19 25 25 C 1.34415 * 111.30225 * 342.99247 * 19 18 17 26 26 O 1.21284 * 124.94397 * 180.66714 * 25 19 18 27 27 H 1.08996 * 109.47010 * 299.99753 * 1 2 3 28 28 H 1.08993 * 109.46913 * 60.00441 * 1 2 3 29 29 H 1.09002 * 109.46474 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47181 * 305.00127 * 4 2 1 31 31 H 1.09002 * 109.47381 * 65.00501 * 4 2 1 32 32 H 0.96995 * 120.00396 * 180.02562 * 8 7 5 33 33 H 1.09006 * 109.46625 * 183.95331 * 14 13 2 34 34 H 1.08994 * 109.46730 * 303.95118 * 14 13 2 35 35 H 1.08996 * 109.46791 * 63.95549 * 14 13 2 36 36 H 1.09005 * 110.96922 * 334.63797 * 17 15 13 37 37 H 1.09002 * 110.97497 * 98.37073 * 17 15 13 38 38 H 1.08995 * 110.25202 * 144.41075 * 18 17 15 39 39 H 1.09006 * 110.24130 * 266.33076 * 18 17 15 40 40 H 1.09001 * 109.46946 * 30.02958 * 20 19 18 41 41 H 1.08995 * 109.46849 * 150.02897 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5393 7 6 4.2305 -1.1934 2.3579 8 7 3.5765 -1.8378 3.2996 9 14 6.0922 -1.0621 2.4363 10 1 6.5839 -0.2926 1.2652 11 1 6.4871 -0.3665 3.6874 12 1 6.6856 -2.4232 2.4181 13 7 2.0198 -0.6925 -1.1994 14 6 1.4338 -2.0352 -1.3081 15 6 1.7537 0.0975 -2.4089 16 1 0.7083 0.4044 -2.4430 17 6 2.1219 -0.7103 -3.6749 18 6 2.6903 0.3910 -4.5971 19 7 3.1767 1.4431 -3.6968 20 6 4.1038 2.5062 -4.0925 21 6 5.5426 2.0414 -3.8585 22 9 5.7928 0.8962 -4.6222 23 9 6.4279 3.0567 -4.2358 24 9 5.7227 1.7462 -2.5028 25 6 2.6623 1.3059 -2.4626 26 8 2.8894 2.0462 -1.5291 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6053 -0.2617 2.1370 31 1 1.7517 -1.7715 1.2056 32 1 4.0608 -2.2445 4.0350 33 1 1.8660 -2.5519 -2.1652 34 1 1.6457 -2.5987 -0.3995 35 1 0.3552 -1.9513 -1.4405 36 1 2.8797 -1.4614 -3.4516 37 1 1.2373 -1.1704 -4.1152 38 1 3.5121 -0.0040 -5.1943 39 1 1.9063 0.7810 -5.2463 40 1 3.9636 2.7360 -5.1487 41 1 3.9089 3.3983 -3.4975 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839491113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:17 Heat of formation + Delta-G solvation = -170.843055 kcal Electronic energy + Delta-G solvation = -27709.084933 eV Core-core repulsion = 23402.555818 eV Total energy + Delta-G solvation = -4306.529115 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.03749 -47.62923 -47.43649 -40.61468 -37.42625 -36.38309 -33.50112 -32.28528 -30.27198 -28.24291 -27.56893 -27.12783 -24.92211 -23.63940 -22.90842 -21.16541 -19.90466 -18.71246 -18.47236 -18.40125 -17.75075 -16.82254 -16.28006 -16.03703 -15.43112 -14.83750 -14.48101 -14.43747 -14.33285 -13.99870 -13.90747 -13.76700 -13.65865 -13.62698 -13.58634 -13.12751 -12.78108 -12.64421 -12.31687 -12.20357 -12.12901 -11.98149 -11.61948 -11.27545 -11.11082 -10.97258 -10.68840 -10.51870 -10.30246 -10.09107 -9.41105 -9.05005 -9.00596 -8.82076 -8.15182 -7.55205 -5.78746 -3.74642 2.33485 2.68983 2.94195 3.46153 3.53139 3.63287 3.77210 3.89084 4.21455 4.35662 4.38859 4.55365 4.67631 4.82385 4.95545 4.97654 5.11844 5.31525 5.38135 5.58906 5.69415 5.78243 5.87442 5.89984 5.96993 6.03100 6.14749 6.19885 6.51217 6.62409 6.79760 6.87949 7.13652 7.55149 7.63221 7.94727 8.04422 8.22363 8.27123 8.70522 9.33134 9.86911 11.33475 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.012419 B = 0.006089 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.139338 B = 4597.450115 C = 6072.688707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.072 3.928 3 H 0.095 0.905 4 C 0.033 3.967 5 C -0.481 4.481 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.907 5.907 9 Si 0.885 3.115 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.495 5.495 14 C 0.023 3.977 15 C 0.050 3.950 16 H 0.076 0.924 17 C -0.128 4.128 18 C 0.105 3.895 19 N -0.627 5.627 20 C 0.092 3.908 21 C 0.429 3.571 22 F -0.185 7.185 23 F -0.186 7.186 24 F -0.165 7.165 25 C 0.533 3.467 26 O -0.487 6.487 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.255 0.745 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.019 0.981 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 5.400 -21.061 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.036 4.036 3 H 0.113 0.887 4 C -0.004 4.004 5 C -0.520 4.520 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.549 5.549 9 Si 0.714 3.286 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.220 5.220 14 C -0.124 4.124 15 C -0.063 4.063 16 H 0.094 0.906 17 C -0.166 4.166 18 C -0.018 4.018 19 N -0.364 5.364 20 C -0.034 4.034 21 C 0.372 3.628 22 F -0.167 7.167 23 F -0.168 7.168 24 F -0.147 7.147 25 C 0.320 3.680 26 O -0.357 6.357 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.037 0.963 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.139 0.861 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.467 5.701 -20.325 21.392 hybrid contribution 0.542 -0.014 0.014 0.543 sum -2.925 5.686 -20.311 21.294 Atomic orbital electron populations 1.22505 0.99938 1.01103 1.00573 1.22248 0.89870 1.00410 0.91023 0.88684 1.19174 0.96455 0.95037 0.89722 1.21247 0.91789 1.32062 1.06869 0.91997 1.24977 0.97842 0.96052 0.96056 1.69975 1.34960 1.37488 1.12469 0.86628 0.86800 0.77429 0.77779 1.19679 1.21424 1.21434 1.62162 1.58445 1.01691 0.99655 1.22460 0.95805 0.90878 1.03284 1.22259 0.97284 0.93313 0.93394 0.90624 1.22789 1.02565 0.97554 0.93712 1.22184 0.99376 0.87524 0.92697 1.48069 1.46110 1.29410 1.12817 1.22377 0.83145 0.92729 1.05109 1.21396 0.90775 0.75454 0.75130 1.93161 1.95444 1.52169 1.75881 1.93173 1.72050 1.60231 1.91351 1.93333 1.96088 1.93250 1.31984 1.20936 0.79986 0.86043 0.81023 1.90742 1.60286 1.47224 1.37454 0.92354 0.94571 0.92842 0.96340 0.96416 0.93542 0.92294 0.89594 0.96259 0.88397 0.89250 0.89930 0.90766 0.86095 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.46 37.16 0.31 -2.87 16 2 C 0.07 1.53 2.14 -67.71 -0.15 1.39 16 3 H 0.10 2.26 5.68 -51.93 -0.30 1.97 16 4 C 0.03 0.87 4.37 -27.88 -0.12 0.75 16 5 C -0.48 -14.23 8.84 -34.44 -0.30 -14.53 16 6 H 0.06 1.91 7.74 -52.49 -0.41 1.50 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 8 N -0.91 -28.21 13.29 55.43 0.74 -27.47 16 9 Si 0.88 23.43 29.54 -169.99 -5.02 18.41 16 10 H -0.27 -7.28 7.11 56.52 0.40 -6.87 16 11 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 13 N -0.50 -9.32 4.27 -226.91 -0.97 -10.29 16 14 C 0.02 0.38 8.27 60.07 0.50 0.88 16 15 C 0.05 0.73 2.56 -67.72 -0.17 0.56 16 16 H 0.08 1.03 6.39 -51.93 -0.33 0.69 16 17 C -0.13 -1.33 5.47 -25.10 -0.14 -1.46 16 18 C 0.10 0.91 7.26 -3.12 -0.02 0.88 16 19 N -0.63 -7.61 2.81 -172.41 -0.48 -8.09 16 20 C 0.09 0.92 5.91 -4.04 -0.02 0.90 16 21 C 0.43 5.56 3.29 37.16 0.12 5.68 16 22 F -0.18 -2.38 16.53 2.25 0.04 -2.34 16 23 F -0.19 -2.28 17.32 2.25 0.04 -2.24 16 24 F -0.17 -2.99 16.96 2.25 0.04 -2.95 16 25 C 0.53 8.80 7.32 -10.86 -0.08 8.72 16 26 O -0.49 -10.16 15.25 5.55 0.08 -10.07 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.55 6.55 -51.93 -0.34 0.21 16 29 H 0.05 0.89 6.41 -51.93 -0.33 0.56 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.48 6.26 -51.93 -0.33 0.16 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.06 0.81 6.37 -51.93 -0.33 0.47 16 34 H 0.09 1.66 6.21 -51.93 -0.32 1.33 16 35 H 0.02 0.27 6.46 -51.93 -0.34 -0.06 16 36 H 0.10 1.15 7.17 -51.93 -0.37 0.78 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.63 7.52 -51.93 -0.39 0.24 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.13 1.26 7.92 -51.93 -0.41 0.84 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -35.59 336.36 -6.09 -41.67 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -5.44 Total: -3.96 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.17 Total: 2.28 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.72 Total: -45.86 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 0.11 Total: -7.53 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.59 -6.09 -41.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839491113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.171 kcal (2) G-P(sol) polarization free energy of solvation -35.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds