Wall clock time and date at job start Tue Mar 31 2020 09:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47277 * 2 1 4 4 C 1.53001 * 109.46918 * 240.00070 * 2 1 3 5 5 C 1.50706 * 109.46743 * 175.00140 * 4 2 1 6 6 H 1.08001 * 120.00337 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99586 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00448 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99787 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47404 * 60.00257 * 9 7 5 11 11 H 1.48504 * 109.47074 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47160 * 299.99921 * 9 7 5 13 13 N 1.46904 * 109.47202 * 120.00253 * 2 1 3 14 14 C 1.46898 * 111.00075 * 58.95176 * 13 2 1 15 15 C 1.46904 * 110.99749 * 295.00009 * 13 2 1 16 16 H 1.08992 * 110.43266 * 66.96158 * 15 13 2 17 17 C 1.54635 * 110.48241 * 189.50183 * 15 13 2 18 18 C 1.54474 * 101.76410 * 94.01416 * 17 15 13 19 19 N 1.46764 * 105.47461 * 25.41291 * 18 17 15 20 20 C 1.46503 * 124.34924 * 162.98183 * 19 18 17 21 21 C 1.53002 * 109.47106 * 90.00090 * 20 19 18 22 22 F 1.39894 * 109.47463 * 60.00122 * 21 20 19 23 23 F 1.39900 * 109.47008 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.46991 * 299.99720 * 21 20 19 25 25 C 1.34647 * 111.33686 * 342.86975 * 19 18 17 26 26 O 1.21288 * 125.07340 * 180.53749 * 25 19 18 27 27 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46863 * 299.99621 * 1 2 3 29 29 H 1.08995 * 109.47190 * 59.99630 * 1 2 3 30 30 H 1.08995 * 109.47198 * 294.99964 * 4 2 1 31 31 H 1.08999 * 109.47159 * 55.00349 * 4 2 1 32 32 H 0.96995 * 120.00356 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47206 * 296.49858 * 14 13 2 34 34 H 1.09007 * 109.46935 * 56.49239 * 14 13 2 35 35 H 1.08997 * 109.47318 * 176.49579 * 14 13 2 36 36 H 1.08999 * 110.96356 * 212.12924 * 17 15 13 37 37 H 1.08995 * 110.96693 * 335.85501 * 17 15 13 38 38 H 1.09003 * 110.24924 * 144.41533 * 18 17 15 39 39 H 1.09005 * 110.24663 * 266.41466 * 18 17 15 40 40 H 1.09003 * 109.47136 * 209.99603 * 20 19 18 41 41 H 1.08997 * 109.46977 * 329.99900 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2303 -1.1926 -2.3583 8 7 3.5763 -1.8360 -3.3006 9 14 6.0919 -1.0602 -2.4374 10 1 6.6845 -1.6864 -1.2283 11 1 6.5868 -1.7593 -3.6505 12 1 6.4843 0.3707 -2.4966 13 7 2.0196 -0.6926 1.1994 14 6 1.5283 -2.0761 1.2459 15 6 1.6487 0.0391 2.4181 16 1 0.5680 0.0209 2.5587 17 6 2.3649 -0.5623 3.6495 18 6 3.6223 0.3295 3.7492 19 7 3.2524 1.6001 3.1145 20 6 3.9894 2.8547 3.2853 21 6 5.0693 2.9627 2.2068 22 9 4.4698 2.9424 0.9429 23 9 5.7734 4.1605 2.3702 24 9 5.9525 1.8838 2.3215 25 6 2.1503 1.4648 2.3531 26 8 1.6339 2.3542 1.7100 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.7515 -1.7715 -1.2056 31 1 1.6053 -0.2617 -2.1370 32 1 4.0606 -2.2428 -4.0360 33 1 0.4413 -2.0732 1.3267 34 1 1.8235 -2.5974 0.3352 35 1 1.9554 -2.5846 2.1103 36 1 1.7484 -0.4688 4.5435 37 1 2.6370 -1.6029 3.4728 38 1 3.8871 0.4927 4.7939 39 1 4.4543 -0.1304 3.2158 40 1 3.3013 3.6954 3.1959 41 1 4.4564 2.8706 4.2700 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839491114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:22 Heat of formation + Delta-G solvation = -171.687342 kcal Electronic energy + Delta-G solvation = -28141.145398 eV Core-core repulsion = 23834.579673 eV Total energy + Delta-G solvation = -4306.565726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.89521 -47.48358 -47.29610 -40.65659 -37.35922 -36.40588 -33.48782 -32.28981 -30.20197 -28.20634 -27.69043 -27.04072 -24.85611 -23.57381 -22.98530 -21.13953 -19.98135 -18.74323 -18.37991 -18.22118 -17.67078 -16.66185 -16.26397 -16.09499 -15.43034 -14.71251 -14.50427 -14.29951 -14.28751 -13.99303 -13.81958 -13.80075 -13.52364 -13.47099 -13.37591 -13.07158 -12.80051 -12.70750 -12.36399 -12.22368 -12.10040 -11.73201 -11.65168 -11.29763 -11.10529 -10.94915 -10.66926 -10.56536 -10.37830 -10.02382 -9.50473 -9.13564 -8.99116 -8.86456 -8.20354 -7.62662 -5.84188 -3.81394 2.35749 2.70569 2.98837 3.44754 3.47529 3.52964 3.89338 3.97246 4.33881 4.40565 4.42712 4.58072 4.61497 4.87335 4.95258 5.04276 5.22799 5.43285 5.52979 5.56440 5.74387 5.83792 5.90149 5.91892 5.97151 6.10540 6.19068 6.26844 6.54239 6.68193 6.77573 6.90634 7.05811 7.49864 7.59622 7.87598 7.98689 8.16321 8.18142 8.62596 9.24177 9.80175 11.27723 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.007290 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.931054 B = 3839.923719 C = 5264.656022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.077 3.923 3 H 0.083 0.917 4 C 0.031 3.969 5 C -0.487 4.487 6 H 0.058 0.942 7 C 0.052 3.948 8 N -0.904 5.904 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.495 5.495 14 C 0.024 3.976 15 C 0.048 3.952 16 H 0.072 0.928 17 C -0.127 4.127 18 C 0.110 3.890 19 N -0.619 5.619 20 C 0.092 3.908 21 C 0.428 3.572 22 F -0.165 7.165 23 F -0.188 7.188 24 F -0.181 7.181 25 C 0.539 3.461 26 O -0.507 6.507 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.257 0.743 33 H 0.020 0.980 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.453 4.878 18.906 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.030 4.030 3 H 0.101 0.899 4 C -0.006 4.006 5 C -0.525 4.525 6 H 0.076 0.924 7 C -0.147 4.147 8 N -0.545 5.545 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.221 5.221 14 C -0.124 4.124 15 C -0.064 4.064 16 H 0.090 0.910 17 C -0.165 4.165 18 C -0.012 4.012 19 N -0.354 5.354 20 C -0.034 4.034 21 C 0.372 3.628 22 F -0.146 7.146 23 F -0.170 7.170 24 F -0.162 7.162 25 C 0.327 3.673 26 O -0.380 6.380 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.141 0.859 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.150 5.309 18.347 19.134 hybrid contribution 0.531 0.113 -0.317 0.629 sum -0.619 5.422 18.030 18.838 Atomic orbital electron populations 1.22434 0.99454 1.00757 1.01086 1.22117 0.90534 0.99433 0.90938 0.89899 1.19224 0.96363 0.95190 0.89834 1.21104 0.91713 1.32697 1.07012 0.92413 1.24968 0.97839 0.95944 0.95958 1.69946 1.35207 1.37070 1.12314 0.86747 0.86638 0.78106 0.77037 1.20350 1.21645 1.20506 1.62275 1.58746 1.01637 0.99397 1.22478 0.96681 0.89744 1.03499 1.22340 0.98679 0.91470 0.93909 0.91007 1.22725 0.95892 1.01101 0.96801 1.22160 0.98902 0.82573 0.97570 1.48074 1.27927 1.09105 1.50273 1.22395 0.93592 0.90202 0.97226 1.21337 0.83194 0.73502 0.84736 1.93318 1.82848 1.95918 1.42524 1.93165 1.80884 1.47336 1.95607 1.93196 1.71129 1.55797 1.96085 1.20889 0.79271 0.90434 0.76739 1.90733 1.60318 1.46518 1.40384 0.93120 0.94041 0.92457 0.96137 0.96265 0.93316 0.96182 0.89087 0.92336 0.90141 0.88000 0.90472 0.89780 0.85858 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.31 8.51 37.15 0.32 -2.99 16 2 C 0.08 1.66 1.95 -67.71 -0.13 1.53 16 3 H 0.08 2.01 5.86 -51.93 -0.30 1.71 16 4 C 0.03 0.80 4.27 -27.88 -0.12 0.68 16 5 C -0.49 -13.99 8.84 -34.44 -0.30 -14.30 16 6 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 9 Si 0.89 22.81 29.54 -169.99 -5.02 17.79 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 13 N -0.50 -9.08 4.34 -226.92 -0.99 -10.06 16 14 C 0.02 0.38 8.58 60.06 0.52 0.90 16 15 C 0.05 0.71 2.15 -67.72 -0.15 0.56 16 16 H 0.07 1.02 6.85 -51.93 -0.36 0.66 16 17 C -0.13 -1.31 6.68 -25.10 -0.17 -1.48 16 18 C 0.11 1.15 7.22 -3.13 -0.02 1.13 16 19 N -0.62 -8.08 2.81 -172.34 -0.48 -8.57 16 20 C 0.09 0.99 5.91 -4.04 -0.02 0.97 16 21 C 0.43 6.20 3.29 37.16 0.12 6.32 16 22 F -0.16 -3.17 16.95 2.25 0.04 -3.14 16 23 F -0.19 -2.51 17.32 2.25 0.04 -2.47 16 24 F -0.18 -2.81 17.09 2.25 0.04 -2.77 16 25 C 0.54 8.84 6.44 -10.76 -0.07 8.78 16 26 O -0.51 -9.97 15.98 5.55 0.09 -9.88 16 27 H 0.05 0.88 6.46 -51.93 -0.34 0.54 16 28 H 0.04 0.71 6.69 -51.93 -0.35 0.36 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.02 0.55 6.10 -51.93 -0.32 0.23 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 33 H 0.02 0.30 6.48 -51.93 -0.34 -0.04 16 34 H 0.09 1.76 6.05 -51.93 -0.31 1.44 16 35 H 0.06 0.78 6.29 -51.93 -0.33 0.45 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.10 1.02 6.17 -51.93 -0.32 0.70 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 40 H 0.12 1.26 7.94 -51.93 -0.41 0.85 16 41 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -34.31 337.70 -6.03 -40.35 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.45 Total: -2.97 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.13 Total: 3.54 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.73 Total: -45.53 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 0.12 Total: -8.38 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.31 -6.03 -40.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839491114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.339 kcal (2) G-P(sol) polarization free energy of solvation -34.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds