Wall clock time and date at job start Tue Mar 31 2020 09:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35953 * 116.99910 * 2 1 4 4 C 1.38211 * 120.00786 * 0.30032 * 3 2 1 5 5 C 1.39732 * 119.85634 * 180.25652 * 4 3 2 6 6 C 1.47385 * 120.06718 * 179.73770 * 5 4 3 7 7 N 1.29807 * 120.00026 * 179.72471 * 6 5 4 8 8 N 1.40104 * 119.99967 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99788 * 359.97438 * 8 7 6 10 10 C 1.46496 * 120.00089 * 180.02562 * 8 7 6 11 11 H 1.09006 * 109.47054 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47385 * 59.99675 * 10 8 7 13 13 C 1.52999 * 109.47066 * 299.99775 * 10 8 7 14 14 O 1.42894 * 109.47487 * 65.00054 * 13 10 8 15 15 C 1.39819 * 119.86924 * 359.47022 * 5 4 3 16 16 C 1.37785 * 120.01360 * 0.24858 * 15 5 4 17 17 C 1.38943 * 120.14419 * 0.02562 * 16 15 5 18 18 O 1.35719 * 119.93224 * 180.02562 * 17 16 15 19 19 C 1.34789 * 117.00223 * 354.38861 * 18 17 16 20 20 H 1.07997 * 120.00206 * 5.05917 * 19 18 17 21 21 C 1.38594 * 120.00085 * 185.06303 * 19 18 17 22 22 N 1.31597 * 120.00056 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99947 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47316 * 90.00200 * 23 21 19 25 25 H 1.48502 * 109.47219 * 209.99894 * 23 21 19 26 26 H 1.48497 * 109.47326 * 329.99880 * 23 21 19 27 27 H 1.09004 * 109.47093 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46901 * 300.00387 * 1 2 3 29 29 H 1.09003 * 109.47529 * 60.00269 * 1 2 3 30 30 H 1.08004 * 120.07146 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.99614 * 359.72767 * 6 5 4 32 32 H 1.09006 * 109.47472 * 90.00446 * 9 8 7 33 33 H 1.09003 * 109.47092 * 209.99876 * 9 8 7 34 34 H 1.09000 * 109.47297 * 330.00029 * 9 8 7 35 35 H 1.08994 * 109.47682 * 179.97438 * 12 10 8 36 36 H 1.09006 * 109.47388 * 300.00254 * 12 10 8 37 37 H 1.09003 * 109.47052 * 59.99694 * 12 10 8 38 38 H 1.09004 * 109.47339 * 185.00213 * 13 10 8 39 39 H 1.09000 * 109.46884 * 304.99807 * 13 10 8 40 40 H 0.96696 * 114.00384 * 179.97438 * 14 13 10 41 41 H 1.08004 * 119.99512 * 180.28145 * 15 5 4 42 42 H 1.08004 * 119.92739 * 180.02562 * 16 15 5 43 43 H 0.96999 * 119.99622 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2936 2.3706 0.0063 5 6 1.9312 3.6139 0.0008 6 6 1.1332 4.8530 0.0016 7 7 1.7269 6.0074 0.0020 8 7 0.9682 7.1853 0.0033 9 6 -0.4950 7.1141 0.0037 10 6 1.6382 8.4881 0.0031 11 1 0.8904 9.2812 0.0038 12 6 2.5116 8.6123 -1.2469 13 6 2.5142 8.6112 1.2515 14 8 3.5657 7.6454 1.1928 15 6 3.3278 3.6803 0.0003 16 6 4.0729 2.5212 -0.0001 17 6 3.4395 1.2846 -0.0004 18 8 4.1776 0.1457 -0.0003 19 6 5.5134 0.2821 -0.1172 20 1 5.9572 1.2667 -0.1233 21 6 6.3175 -0.8411 -0.2297 22 7 7.6217 -0.7078 -0.3444 23 14 5.5499 -2.5441 -0.2201 24 1 5.2201 -2.9463 -1.6110 25 1 6.5097 -3.5164 0.3619 26 1 4.3098 -2.5235 0.5965 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 0.2150 2.3155 0.0116 31 1 0.0544 4.8005 0.0020 32 1 -0.8577 7.0956 1.0315 33 1 -0.9014 7.9858 -0.5092 34 1 -0.8149 6.2080 -0.5108 35 1 3.0097 9.5817 -1.2474 36 1 3.2593 7.8192 -1.2481 37 1 1.8875 8.5245 -2.1363 38 1 2.9426 9.6125 1.2974 39 1 1.9076 8.4345 2.1397 40 1 4.1619 7.6664 1.9538 41 1 3.8228 4.6403 0.0007 42 1 5.1516 2.5741 -0.0001 43 1 8.1844 -1.4940 -0.4235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842543686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:34 Heat of formation + Delta-G solvation = -24.648831 kcal Electronic energy + Delta-G solvation = -25244.836035 eV Core-core repulsion = 21486.503118 eV Total energy + Delta-G solvation = -3758.332917 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.65507 -38.27709 -37.64850 -36.71474 -35.75813 -33.41347 -32.33376 -30.79656 -29.61114 -28.96775 -26.84480 -26.46399 -25.84182 -24.94818 -22.56224 -21.63787 -20.67832 -18.99594 -17.88533 -17.64228 -17.45430 -16.73824 -16.09039 -15.59035 -15.24741 -15.23510 -14.97618 -14.39999 -14.32075 -13.79824 -13.60094 -13.57140 -13.52666 -13.16409 -12.82703 -12.52556 -12.23932 -12.10526 -12.06056 -11.89666 -11.51355 -11.41535 -11.32521 -11.02643 -10.98034 -10.79001 -10.66326 -10.21699 -10.16200 -9.96650 -9.56690 -9.31588 -8.84347 -8.07683 -7.70511 -6.70729 -6.38092 -3.99782 1.65888 2.21829 2.79653 3.13925 3.29358 3.34076 3.51479 3.92455 4.25614 4.31137 4.60382 4.64035 4.79493 4.90262 4.98679 5.12364 5.14795 5.18941 5.24173 5.34320 5.39257 5.46741 5.49141 5.53908 5.57593 5.65323 5.71111 5.81496 5.89188 5.99761 6.16733 6.28117 6.31317 6.48470 6.58017 6.95782 7.14582 7.29303 7.36233 7.54977 7.70477 7.72817 7.98721 8.16458 8.65554 8.97217 9.60800 10.68822 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.003418 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.406096 B = 8190.784603 C = 9518.439960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.309 6.309 3 C 0.052 3.948 4 C -0.146 4.146 5 C -0.101 4.101 6 C 0.069 3.931 7 N -0.203 5.203 8 N -0.551 5.551 9 C 0.072 3.928 10 C 0.192 3.808 11 H 0.090 0.910 12 C -0.157 4.157 13 C 0.069 3.931 14 O -0.542 6.542 15 C -0.059 4.059 16 C -0.204 4.204 17 C 0.148 3.852 18 O -0.201 6.201 19 C -0.385 4.385 20 H 0.109 0.891 21 C 0.064 3.936 22 N -0.877 5.877 23 Si 0.904 3.096 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.255 1.255 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.038 0.962 40 H 0.370 0.630 41 H 0.126 0.874 42 H 0.141 0.859 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.443 16.009 1.926 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.224 6.224 3 C 0.007 3.993 4 C -0.168 4.168 5 C -0.104 4.104 6 C -0.141 4.141 7 N -0.007 5.007 8 N -0.367 5.367 9 C -0.074 4.074 10 C 0.087 3.913 11 H 0.108 0.892 12 C -0.216 4.216 13 C -0.011 4.011 14 O -0.345 6.345 15 C -0.079 4.079 16 C -0.224 4.224 17 C 0.094 3.906 18 O -0.105 6.105 19 C -0.461 4.461 20 H 0.126 0.874 21 C -0.139 4.139 22 N -0.514 5.514 23 Si 0.729 3.271 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.179 1.179 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.139 0.861 31 H 0.116 0.884 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.215 0.785 41 H 0.144 0.856 42 H 0.159 0.841 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.722 15.971 1.349 21.764 hybrid contribution -1.139 -0.516 0.557 1.369 sum -15.861 15.455 1.906 22.228 Atomic orbital electron populations 1.22891 0.80260 1.02875 1.00460 1.86177 1.19571 1.26575 1.90028 1.17966 0.89231 0.84351 1.07756 1.20666 0.98344 0.90752 1.06990 1.17610 0.92462 0.89311 1.11028 1.23920 0.96550 0.90814 1.02823 1.74667 1.23109 0.92578 1.10355 1.50067 1.01029 1.01633 1.83957 1.21792 0.82822 1.02334 1.00474 1.20713 0.93503 0.82561 0.94494 0.89238 1.22060 1.00689 1.02322 0.96495 1.22505 0.89857 0.91187 0.97570 1.86733 1.42162 1.58275 1.47352 1.20986 0.92373 0.97863 0.96697 1.21036 1.01181 0.90580 1.09583 1.18549 0.87674 0.87126 0.97248 1.83620 1.20194 1.27292 1.79405 1.20834 0.77364 0.97044 1.50842 0.87408 1.24454 0.94532 0.99448 0.95497 1.69671 1.03051 1.31574 1.47119 0.86188 0.79756 0.81766 0.79385 1.19868 1.20912 1.17887 0.89175 0.93457 0.93421 0.86140 0.88438 0.94237 0.91841 0.91901 0.92582 0.90263 0.93198 0.93799 0.94346 0.78479 0.85591 0.84139 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.31 -6.27 10.28 -34.21 -0.35 -6.62 16 3 C 0.05 1.09 6.70 -39.11 -0.26 0.83 16 4 C -0.15 -2.58 8.77 -39.03 -0.34 -2.92 16 5 C -0.10 -1.81 5.87 -105.03 -0.62 -2.42 16 6 C 0.07 1.07 10.15 -14.69 -0.15 0.92 16 7 N -0.20 -3.17 8.91 32.14 0.29 -2.89 16 8 N -0.55 -6.91 3.63 -114.61 -0.42 -7.33 16 9 C 0.07 0.69 10.14 59.85 0.61 1.29 16 10 C 0.19 1.97 3.32 -67.93 -0.23 1.75 16 11 H 0.09 0.67 7.79 -51.93 -0.40 0.26 16 12 C -0.16 -1.71 9.12 37.16 0.34 -1.37 16 13 C 0.07 0.67 6.85 37.16 0.25 0.93 16 14 O -0.54 -6.65 11.52 -35.23 -0.41 -7.06 16 15 C -0.06 -1.15 9.57 -39.16 -0.37 -1.53 16 16 C -0.20 -4.55 9.14 -39.49 -0.36 -4.91 16 17 C 0.15 3.56 6.67 -38.84 -0.26 3.30 16 18 O -0.20 -5.51 8.36 -14.35 -0.12 -5.63 16 19 C -0.39 -11.03 9.94 30.86 0.31 -10.73 16 20 H 0.11 3.12 5.42 -52.49 -0.28 2.83 16 21 C 0.06 1.83 5.49 -17.52 -0.10 1.73 16 22 N -0.88 -25.53 13.97 55.48 0.77 -24.75 16 23 Si 0.90 22.27 28.61 -169.99 -4.86 17.41 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.57 7.64 -51.93 -0.40 0.17 16 29 H 0.05 0.57 7.67 -51.93 -0.40 0.18 16 30 H 0.12 1.71 6.29 -52.48 -0.33 1.38 16 31 H 0.10 1.29 5.91 -52.49 -0.31 0.98 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 34 H 0.06 0.61 6.19 -51.93 -0.32 0.28 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 1.11 7.42 -51.93 -0.39 0.73 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.37 3.16 9.12 45.56 0.42 3.58 16 41 H 0.13 2.39 7.54 -52.48 -0.40 2.00 16 42 H 0.14 3.24 5.62 -52.48 -0.29 2.94 16 43 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -33.45 359.82 -5.05 -38.50 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.19 Total: 4.66 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -0.19 Total: -11.71 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.65 Total: -34.97 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.88 Total: -19.31 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.86 Total: 17.41 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.45 -5.05 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842543686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.848 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds