Wall clock time and date at job start Tue Mar 31 2020 09:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47430 * 2 1 4 4 C 1.34220 * 125.74565 * 124.99987 * 3 2 1 5 5 C 1.38124 * 107.40882 * 179.97438 * 4 3 2 6 6 C 1.47291 * 126.42670 * 179.97438 * 5 4 3 7 7 O 1.21523 * 119.99885 * 180.02562 * 6 5 4 8 8 O 1.34761 * 119.99642 * 0.02710 * 6 5 4 9 9 C 1.45202 * 116.99218 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46576 * 180.02562 * 9 8 6 11 11 O 1.42901 * 109.47290 * 64.99809 * 10 9 8 12 12 C 1.42905 * 114.00218 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47049 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99943 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99720 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00250 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00138 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47005 * 90.00234 * 17 15 13 19 19 H 1.48500 * 109.47337 * 210.00959 * 17 15 13 20 20 H 1.48506 * 109.46707 * 330.00483 * 17 15 13 21 21 C 1.41343 * 107.15006 * 0.02562 * 5 4 3 22 22 C 1.50690 * 125.99765 * 179.97438 * 21 5 4 23 23 C 1.53000 * 117.50063 * 239.99911 * 22 21 5 24 24 C 1.53002 * 60.02940 * 252.49714 * 23 22 21 25 25 N 1.30433 * 108.00622 * 0.22593 * 21 5 4 26 26 H 1.09005 * 109.47244 * 300.00412 * 1 2 3 27 27 H 1.09000 * 109.47330 * 59.99738 * 1 2 3 28 28 H 1.08994 * 109.47433 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47141 * 239.99947 * 2 1 3 30 30 H 1.09000 * 109.47330 * 120.00262 * 2 1 3 31 31 H 1.08001 * 126.29529 * 359.94646 * 4 3 2 32 32 H 1.08994 * 109.47340 * 299.99908 * 9 8 6 33 33 H 1.08997 * 109.47497 * 60.00559 * 9 8 6 34 34 H 1.08997 * 109.47153 * 185.00429 * 10 9 8 35 35 H 1.09008 * 109.47323 * 305.00351 * 10 9 8 36 36 H 1.09005 * 109.47018 * 300.00131 * 12 11 10 37 37 H 1.08997 * 109.47027 * 60.00038 * 12 11 10 38 38 H 0.97002 * 120.00039 * 179.97438 * 16 15 13 39 39 H 1.09007 * 115.55011 * 25.66700 * 22 21 5 40 40 H 1.09002 * 117.49833 * 359.97438 * 23 22 21 41 41 H 1.09002 * 117.49953 * 144.99860 * 23 22 21 42 42 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 43 43 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8689 1.9121 0.8923 5 6 3.0715 3.2311 0.5361 6 6 3.9318 4.2029 1.2323 7 8 4.0245 5.3406 0.8153 8 8 4.6162 3.8304 2.3319 9 6 5.4447 4.8402 2.9661 10 6 6.1390 4.2361 4.1883 11 8 7.0447 3.2149 3.7654 12 6 7.7485 2.5822 4.8362 13 6 8.6706 1.5289 4.2782 14 1 8.7150 1.3599 3.2124 15 6 9.4581 0.7819 5.1282 16 7 9.4044 0.9881 6.4260 17 14 10.6006 -0.5243 4.4366 18 1 11.9246 0.0810 4.1435 19 1 10.7643 -1.6154 5.4306 20 1 10.0211 -1.0769 3.1860 21 6 2.2973 3.4738 -0.6214 22 6 2.2050 4.7799 -1.3674 23 6 0.8250 5.4299 -1.4856 24 6 1.4698 4.7769 -2.7099 25 7 1.6727 2.3704 -0.9273 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.3128 1.4019 1.7344 32 1 6.1958 5.1909 2.2584 33 1 4.8212 5.6777 3.2790 34 1 6.6899 5.0151 4.7152 35 1 5.3916 3.8055 4.8549 36 1 8.3329 3.3268 5.3769 37 1 7.0343 2.1174 5.5158 38 1 9.9582 0.4622 7.0240 39 1 3.0658 5.4410 -1.2661 40 1 -0.0162 4.9126 -1.0242 41 1 0.7779 6.5187 -1.4622 42 1 1.0528 3.8303 -3.0536 43 1 1.8470 5.4361 -3.4917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869942702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:07 Heat of formation + Delta-G solvation = -38.659521 kcal Electronic energy + Delta-G solvation = -24680.861663 eV Core-core repulsion = 20921.921197 eV Total energy + Delta-G solvation = -3758.940466 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.66024 -39.71508 -37.38845 -36.90826 -35.78212 -34.49003 -32.77993 -30.97312 -30.26335 -29.54014 -26.92440 -24.96430 -24.10713 -22.52521 -22.43364 -22.13807 -21.85509 -20.57050 -19.26418 -17.75697 -17.02093 -16.47672 -16.39335 -15.91266 -15.78879 -15.55165 -15.15464 -14.80583 -14.59453 -14.29962 -14.20864 -13.56693 -13.42558 -12.98461 -12.75679 -12.55912 -12.41565 -12.11492 -11.90157 -11.82701 -11.65967 -11.41534 -11.17015 -10.94737 -10.91377 -10.85141 -10.74476 -10.59641 -10.27613 -10.13584 -9.99976 -9.38007 -9.13739 -8.87800 -8.83406 -8.21699 -6.13419 -4.15039 1.31324 1.86950 2.04966 2.99441 3.22549 3.28620 3.33690 3.38864 3.83321 4.02669 4.31611 4.31878 4.52310 4.58479 4.76168 4.77293 4.81870 4.86693 4.93516 5.16818 5.23130 5.28083 5.28812 5.32697 5.38841 5.49943 5.52072 5.53682 5.67541 5.72047 5.91416 5.98443 5.99189 6.07333 6.13795 6.27315 6.61231 6.74588 7.05298 7.39150 7.39994 7.77008 8.08165 8.11974 8.52618 8.98084 9.49829 10.98117 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.002956 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.718236 B = 9471.033469 C =10695.498776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 N -0.358 5.358 4 C 0.135 3.865 5 C -0.274 4.274 6 C 0.543 3.457 7 O -0.520 6.520 8 O -0.342 6.342 9 C 0.077 3.923 10 C 0.062 3.938 11 O -0.391 6.391 12 C 0.194 3.806 13 C -0.514 4.514 14 H 0.067 0.933 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.908 3.092 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.166 3.834 22 C -0.084 4.084 23 C -0.159 4.159 24 C -0.167 4.167 25 N -0.298 5.298 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.196 0.804 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.264 0.736 39 H 0.139 0.861 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.594 2.528 -12.812 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.004 3.996 3 N -0.135 5.135 4 C -0.017 4.017 5 C -0.287 4.287 6 C 0.388 3.612 7 O -0.411 6.411 8 O -0.258 6.258 9 C 0.004 3.996 10 C -0.016 4.016 11 O -0.310 6.310 12 C 0.120 3.880 13 C -0.553 4.553 14 H 0.085 0.915 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.735 3.265 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.196 1.196 21 C 0.000 4.000 22 C -0.103 4.103 23 C -0.197 4.197 24 C -0.205 4.205 25 N -0.119 5.119 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.213 0.787 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.156 0.844 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.300 1.982 -13.725 24.585 hybrid contribution 1.335 -0.270 0.872 1.617 sum -18.965 1.711 -12.854 22.974 Atomic orbital electron populations 1.22054 0.93414 1.03130 1.03693 1.21893 0.96382 0.76595 1.04700 1.48531 1.34096 1.10477 1.20442 1.23445 0.90659 0.93414 0.94200 1.19276 1.11904 0.94182 1.03331 1.19941 0.77059 0.85881 0.78334 1.90763 1.63708 1.20712 1.65904 1.86623 1.55847 1.43660 1.39702 1.23166 0.92452 0.89082 0.94937 1.22329 0.92851 0.92695 0.93707 1.87922 1.56396 1.51016 1.35715 1.20228 0.90525 0.91830 0.85406 1.21055 1.21971 1.17824 0.94412 0.91515 1.24947 0.97193 0.97624 0.94729 1.69963 1.40424 1.41168 1.02265 0.86339 0.80730 0.80711 0.78728 1.20434 1.21078 1.19626 1.21397 0.92620 0.93548 0.92480 1.20542 0.98398 0.92793 0.98615 1.22961 0.94768 1.00243 1.01750 1.23015 1.03440 1.03126 0.90885 1.77055 1.24557 0.96434 1.13834 0.91916 0.91041 0.90393 0.89110 0.87780 0.78689 0.90518 0.90455 0.91992 0.93284 0.97635 0.97539 0.92636 0.84353 0.88817 0.88053 0.88123 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.08 37.16 0.37 -0.63 16 2 C 0.12 0.85 7.21 -4.04 -0.03 0.82 16 3 N -0.36 -3.91 3.65 -60.80 -0.22 -4.14 16 4 C 0.13 1.62 11.29 -16.55 -0.19 1.43 16 5 C -0.27 -3.99 6.13 -105.08 -0.64 -4.63 16 6 C 0.54 8.94 7.95 34.41 0.27 9.22 16 7 O -0.52 -9.16 14.79 -19.28 -0.29 -9.45 16 8 O -0.34 -5.90 10.02 -43.44 -0.44 -6.33 16 9 C 0.08 1.26 5.85 37.16 0.22 1.47 16 10 C 0.06 1.13 6.33 37.16 0.24 1.36 16 11 O -0.39 -9.42 10.30 -38.81 -0.40 -9.82 16 12 C 0.19 5.27 5.69 36.01 0.20 5.48 16 13 C -0.51 -15.07 9.43 -34.44 -0.32 -15.39 16 14 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 17 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.17 2.29 6.80 -82.01 -0.56 1.73 16 22 C -0.08 -1.02 5.66 -91.74 -0.52 -1.53 16 23 C -0.16 -1.56 10.23 -26.73 -0.27 -1.84 16 24 C -0.17 -1.61 10.14 -26.69 -0.27 -1.89 16 25 N -0.30 -3.82 11.91 33.90 0.40 -3.42 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.49 8.06 -51.93 -0.42 0.07 16 31 H 0.20 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.14 1.83 6.73 -51.93 -0.35 1.48 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.00 7.90 -51.93 -0.41 0.59 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -34.53 375.78 -7.80 -42.33 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -6.64 Total: -2.69 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.60 Total: -2.88 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.92 Total: -33.46 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -1.12 Total: -25.60 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.53 -7.80 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869942702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.668 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds