Wall clock time and date at job start Tue Mar 31 2020 10:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47243 * 2 1 4 4 N 1.41598 * 114.00270 * 180.02562 * 3 2 1 5 5 C 1.46501 * 120.00137 * 270.00881 * 4 3 2 6 6 C 1.53001 * 109.46646 * 254.99725 * 5 4 3 7 7 C 1.34778 * 119.99996 * 89.99585 * 4 3 2 8 8 O 1.21584 * 119.99654 * 180.02562 * 7 4 3 9 9 N 1.34769 * 119.99808 * 0.02562 * 7 4 3 10 10 C 1.46508 * 120.00011 * 179.97438 * 9 7 4 11 11 C 1.50695 * 109.47103 * 179.97438 * 10 9 7 12 12 C 1.38299 * 119.93247 * 90.00118 * 11 10 9 13 13 C 1.38101 * 120.07425 * 179.97438 * 12 11 10 14 14 C 1.38886 * 119.92536 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47517 * 59.99414 * 20 18 16 22 22 H 1.48505 * 109.47332 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46989 * 299.99567 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38106 * 119.92542 * 359.44577 * 24 14 13 26 26 H 1.09005 * 109.47544 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46992 * 300.00073 * 1 2 3 28 28 H 1.09005 * 109.47369 * 59.99426 * 1 2 3 29 29 H 1.09002 * 109.46644 * 240.00333 * 2 1 3 30 30 H 1.08998 * 109.46759 * 120.00362 * 2 1 3 31 31 H 1.08999 * 109.47359 * 14.98956 * 5 4 3 32 32 H 1.08998 * 109.47669 * 134.99738 * 5 4 3 33 33 H 1.09001 * 109.47125 * 299.99639 * 6 5 4 34 34 H 1.09001 * 109.47568 * 59.99734 * 6 5 4 35 35 H 1.09003 * 109.47407 * 179.97438 * 6 5 4 36 36 H 0.97001 * 120.00514 * 359.97438 * 9 7 4 37 37 H 1.08998 * 109.46632 * 59.99915 * 10 9 7 38 38 H 1.08996 * 109.47144 * 299.99646 * 10 9 7 39 39 H 1.07999 * 119.96503 * 0.02562 * 12 11 10 40 40 H 1.07992 * 120.03608 * 180.02562 * 13 12 11 41 41 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 43 43 H 1.07997 * 119.96326 * 180.27708 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 7 3.4179 1.4591 -0.0006 5 6 4.1487 1.5166 1.2678 6 6 4.6153 2.9512 1.5229 7 6 4.0892 1.5124 -1.1681 8 8 5.3013 1.6080 -1.1685 9 7 3.4169 1.4598 -2.3349 10 6 4.1465 1.5183 -3.6040 11 6 3.1698 1.4409 -4.7490 12 6 2.6274 2.6002 -5.2729 13 6 1.7325 2.5327 -6.3225 14 6 1.3769 1.2988 -6.8516 15 8 0.4978 1.2292 -7.8837 16 6 0.0949 2.3968 -8.4243 17 1 0.4058 3.3321 -7.9830 18 6 -0.7189 2.3967 -9.5470 19 7 -1.0974 1.2573 -10.0850 20 14 -1.2766 4.0142 -10.2965 21 1 -0.0891 4.8019 -10.7142 22 1 -2.1314 3.7428 -11.4801 23 1 -2.0525 4.7841 -9.2912 24 6 1.9184 0.1361 -6.3192 25 6 2.8172 0.2107 -5.2733 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 3.4942 1.1978 2.0791 32 1 5.0145 0.8562 1.2187 33 1 5.2698 3.2700 0.7117 34 1 3.7495 3.6116 1.5721 35 1 5.1587 2.9942 2.4669 36 1 2.4499 1.3832 -2.3346 37 1 4.8415 0.6806 -3.6624 38 1 4.7008 2.4550 -3.6616 39 1 2.9047 3.5594 -4.8613 40 1 1.3097 3.4384 -6.7315 41 1 -1.6670 1.2572 -10.8701 42 1 1.6404 -0.8251 -6.7256 43 1 3.2421 -0.6929 -4.8618 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875218565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:07 Heat of formation + Delta-G solvation = -30.175316 kcal Electronic energy + Delta-G solvation = -24952.163251 eV Core-core repulsion = 21193.590688 eV Total energy + Delta-G solvation = -3758.572564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.21454 -39.11949 -37.72216 -36.89247 -34.87308 -34.00359 -32.38611 -31.55436 -30.33110 -30.18099 -28.86013 -25.91026 -24.84003 -23.46870 -22.97414 -22.05412 -20.62564 -20.55910 -19.03755 -18.07225 -17.30026 -16.93815 -16.04075 -15.46984 -15.43668 -14.98775 -14.80519 -14.56942 -14.37315 -14.16337 -13.89712 -13.63735 -13.49317 -13.13444 -12.90691 -12.78629 -12.67484 -12.44458 -12.24202 -12.07735 -11.84176 -11.68966 -11.39596 -11.28811 -10.96330 -10.79163 -10.71263 -10.69789 -10.50154 -10.08852 -9.43584 -9.32472 -8.91120 -8.76429 -8.28388 -7.33403 -6.53144 -4.12043 1.60769 2.10979 2.13578 3.02164 3.08980 3.10057 3.12994 3.42791 3.90512 4.43521 4.63189 4.68767 4.79316 4.81382 5.00970 5.01450 5.04860 5.15994 5.17352 5.23669 5.39135 5.44030 5.54327 5.57887 5.66994 5.71706 5.81272 5.82400 5.90900 6.05965 6.12109 6.34087 6.35068 6.55111 6.60724 6.80016 6.85543 6.97868 7.15004 7.27976 7.35025 7.71291 7.91531 7.94271 8.46376 8.92159 9.60157 10.64320 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.002731 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.045997 B =10249.744408 C =10588.233167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.019 3.981 3 O -0.145 6.145 4 N -0.498 5.498 5 C 0.137 3.863 6 C -0.169 4.169 7 C 0.711 3.289 8 O -0.578 6.578 9 N -0.730 5.730 10 C 0.195 3.805 11 C -0.214 4.214 12 C -0.048 4.048 13 C -0.237 4.237 14 C 0.161 3.839 15 O -0.173 6.173 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.041 3.959 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.196 4.196 25 C -0.054 4.054 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.402 0.598 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.272 0.728 42 H 0.118 0.882 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.426 -0.856 20.006 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.059 4.059 3 O -0.150 6.150 4 N -0.281 5.281 5 C 0.016 3.984 6 C -0.227 4.227 7 C 0.413 3.587 8 O -0.457 6.457 9 N -0.385 5.385 10 C 0.072 3.928 11 C -0.216 4.216 12 C -0.067 4.067 13 C -0.256 4.256 14 C 0.106 3.894 15 O -0.076 6.076 16 C -0.470 4.470 17 H 0.110 0.890 18 C -0.164 4.164 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.215 4.215 25 C -0.073 4.073 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.237 0.763 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.958 -0.887 19.641 20.543 hybrid contribution -0.940 0.524 -0.371 1.138 sum 5.018 -0.363 19.270 19.916 Atomic orbital electron populations 1.21733 0.92033 1.03180 1.03669 1.23124 0.96126 0.85218 1.01413 1.90665 1.02282 1.25354 1.96747 1.49417 0.94439 1.78524 1.05670 1.21492 0.95394 0.98509 0.82987 1.22152 1.01961 0.96253 1.02339 1.15939 0.84787 0.78031 0.79899 1.90948 1.10886 1.58779 1.85042 1.45569 1.10995 1.77645 1.04276 1.19888 0.92236 1.01751 0.78883 1.19201 1.06431 0.93800 1.02154 1.20654 0.94645 0.96814 0.94618 1.21160 1.04779 0.98170 1.01504 1.19436 0.88286 0.93237 0.88410 1.83975 1.50171 1.33455 1.39958 1.21314 1.31083 0.83618 1.10977 0.88957 1.25315 0.96353 0.99145 0.95606 1.70023 1.32800 1.25493 1.21101 0.85767 0.78979 0.79933 0.78706 1.19401 1.20210 1.19416 1.20199 1.03098 0.96845 1.01371 1.20521 0.95703 0.96203 0.94838 0.90283 0.91607 0.91077 0.92210 0.92470 0.89827 0.90073 0.91296 0.92238 0.91386 0.76259 0.91627 0.91576 0.87343 0.85408 0.91823 0.86395 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.02 0.17 7.04 37.16 0.26 0.43 16 3 O -0.15 -1.63 10.19 -11.47 -0.12 -1.75 16 4 N -0.50 -5.98 3.02 -65.23 -0.20 -6.18 16 5 C 0.14 1.29 6.38 -4.04 -0.03 1.27 16 6 C -0.17 -1.54 10.04 37.16 0.37 -1.17 16 7 C 0.71 10.32 8.21 -86.92 -0.71 9.61 16 8 O -0.58 -9.86 15.42 5.29 0.08 -9.78 16 9 N -0.73 -10.16 5.52 -66.42 -0.37 -10.52 16 10 C 0.20 2.83 5.80 -5.19 -0.03 2.80 16 11 C -0.21 -3.49 5.25 -104.58 -0.55 -4.04 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 13 C -0.24 -4.93 9.17 -39.39 -0.36 -5.29 16 14 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 15 O -0.17 -4.79 9.76 0.05 0.00 -4.79 16 16 C -0.39 -10.71 9.49 30.89 0.29 -10.42 16 17 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 19 N -0.86 -24.67 13.67 55.48 0.76 -23.91 16 20 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 C -0.20 -3.93 9.99 -39.39 -0.39 -4.33 16 25 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.77 7.90 -51.93 -0.41 0.36 16 33 H 0.07 0.79 7.34 -51.93 -0.38 0.41 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.40 5.40 7.53 -40.82 -0.31 5.09 16 37 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -31.21 369.02 -7.48 -38.69 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.29 Total: 7.58 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.89 Total: -9.91 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.19 Total: -40.62 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.03 Total: -16.32 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.21 -7.48 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875218565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.516 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds