Wall clock time and date at job start Tue Mar 31 2020 10:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46943 * 2 1 4 4 C 1.42902 * 113.99749 * 185.12852 * 3 2 1 5 5 C 1.53000 * 109.46825 * 207.15206 * 4 3 2 6 6 C 1.50701 * 109.46911 * 175.00229 * 5 4 3 7 7 O 1.21269 * 120.00178 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99793 * 179.97438 * 6 5 4 9 9 C 1.39273 * 119.99900 * 184.93531 * 8 6 5 10 10 C 1.39678 * 119.57258 * 175.01486 * 9 8 6 11 11 C 1.38648 * 119.49152 * 180.02562 * 10 9 8 12 12 C 1.38353 * 118.67182 * 359.74820 * 11 10 9 13 13 C 1.40576 * 119.12661 * 0.49461 * 12 11 10 14 14 C 1.41342 * 119.78693 * 179.77037 * 13 12 11 15 15 H 1.08006 * 119.99815 * 5.78120 * 14 13 12 16 16 C 1.40022 * 119.99963 * 185.77929 * 14 13 12 17 17 N 1.30739 * 120.00099 * 5.86333 * 16 14 13 18 18 Si 1.86804 * 119.99973 * 185.85696 * 16 14 13 19 19 H 1.48503 * 109.47162 * 265.00680 * 18 16 14 20 20 H 1.48501 * 109.46843 * 25.00496 * 18 16 14 21 21 H 1.48501 * 109.47206 * 145.00361 * 18 16 14 22 22 N 1.31904 * 119.57402 * 355.03444 * 9 8 6 23 23 O 1.42898 * 109.46984 * 87.15239 * 4 3 2 24 24 C 1.42906 * 113.99979 * 286.09468 * 23 4 3 25 25 C 1.52994 * 109.46981 * 186.56888 * 24 23 4 26 26 H 1.08991 * 109.47236 * 60.00092 * 1 2 3 27 27 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47074 * 299.99880 * 1 2 3 29 29 H 1.09000 * 109.47074 * 240.00120 * 2 1 3 30 30 H 1.09001 * 109.47129 * 119.99868 * 2 1 3 31 31 H 1.09000 * 109.46981 * 327.14841 * 4 3 2 32 32 H 1.08996 * 109.47383 * 54.99515 * 5 4 3 33 33 H 1.09000 * 109.46735 * 294.99906 * 5 4 3 34 34 H 0.97000 * 119.99999 * 4.93376 * 8 6 5 35 35 H 1.08001 * 120.25476 * 0.02562 * 10 9 8 36 36 H 1.08002 * 120.66698 * 180.02562 * 11 10 9 37 37 H 1.07994 * 120.43547 * 180.24618 * 12 11 10 38 38 H 0.97004 * 119.99835 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.46954 * 306.57100 * 24 23 4 40 40 H 1.09001 * 109.47070 * 66.57430 * 24 23 4 41 41 H 1.08997 * 109.47725 * 300.00351 * 25 24 23 42 42 H 1.09000 * 109.47492 * 60.00571 * 25 24 23 43 43 H 1.09005 * 109.46957 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4260 1.4619 -0.1167 5 6 3.8887 2.7620 0.5440 6 6 5.3943 2.8245 0.5299 7 8 6.0343 1.9182 0.0401 8 7 6.0297 3.8875 1.0615 9 6 7.4144 3.9948 0.9575 10 6 8.0530 5.1484 1.4183 11 6 9.4315 5.2537 1.3134 12 6 10.1370 4.2022 0.7560 13 6 9.4358 3.0699 0.3060 14 6 10.1421 1.9897 -0.2702 15 1 11.2221 1.9941 -0.2792 16 6 9.4417 0.9139 -0.8293 17 7 8.1384 0.9598 -0.9221 18 14 10.3694 -0.5870 -1.4427 19 1 10.6202 -0.4524 -2.9002 20 1 11.6651 -0.6953 -0.7254 21 1 9.5604 -1.8064 -1.1902 22 7 8.1058 3.0058 0.4247 23 8 3.7909 1.4735 -1.4982 24 6 3.6929 0.1984 -2.1360 25 6 4.2588 0.2928 -3.5543 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9007 0.6143 0.3775 32 1 3.5333 2.7927 1.5739 33 1 3.4846 3.6124 -0.0052 34 1 5.5226 4.5778 1.5166 35 1 7.4774 5.9522 1.8530 36 1 9.9447 6.1369 1.6640 37 1 11.2118 4.2523 0.6640 38 1 7.6531 0.2143 -1.3091 39 1 4.2608 -0.5373 -1.5665 40 1 2.6472 -0.1056 -2.1816 41 1 3.6911 1.0286 -4.1239 42 1 5.3046 0.5968 -3.5089 43 1 4.1845 -0.6799 -4.0407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:50 Heat of formation + Delta-G solvation = -75.300032 kcal Electronic energy + Delta-G solvation = -26267.839800 eV Core-core repulsion = 22507.310482 eV Total energy + Delta-G solvation = -3760.529318 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.62368 -38.78365 -37.33103 -36.15908 -34.07339 -32.96447 -32.49204 -30.58785 -30.35154 -29.98878 -28.61543 -25.53705 -23.68797 -23.17990 -22.23932 -21.65262 -20.99963 -19.22154 -17.82287 -17.43813 -17.38841 -16.15069 -15.66570 -15.35986 -14.75352 -14.65410 -14.51829 -14.42484 -14.10961 -13.61741 -13.55148 -13.14127 -12.86102 -12.69890 -12.50422 -12.29242 -11.96773 -11.92450 -11.82836 -11.72524 -11.45319 -11.13761 -11.01572 -10.93148 -10.82409 -10.63155 -10.46001 -9.94702 -9.80582 -9.59802 -9.45172 -8.98174 -8.91791 -7.94812 -7.17805 -6.92796 -6.15622 -4.36003 2.80511 3.08880 3.16902 3.19959 3.28207 3.28614 3.74204 3.95029 4.07274 4.13902 4.79061 4.91865 4.94264 5.08944 5.09465 5.15013 5.29491 5.39169 5.39790 5.55514 5.59611 5.69979 5.72717 5.83914 5.93373 5.95741 6.07183 6.12169 6.15303 6.39126 6.52107 6.71549 6.86777 6.88012 7.10597 7.25989 7.39709 7.58613 7.65624 7.84112 8.09536 8.23068 8.49856 8.77661 9.07280 9.30242 10.27017 10.49705 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.004967 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.343171 B = 5636.198812 C = 7343.519858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.398 6.398 4 C 0.265 3.735 5 C -0.126 4.126 6 C 0.476 3.524 7 O -0.400 6.400 8 N -0.667 5.667 9 C 0.374 3.626 10 C -0.357 4.357 11 C -0.037 4.037 12 C -0.307 4.307 13 C 0.273 3.727 14 C -0.428 4.428 15 H 0.082 0.918 16 C 0.061 3.939 17 N -0.655 5.655 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.263 1.263 21 H -0.278 1.278 22 N -0.475 5.475 23 O -0.369 6.369 24 C 0.057 3.943 25 C -0.150 4.150 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.399 0.601 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.271 0.729 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.421 -2.479 0.683 13.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.320 6.320 4 C 0.169 3.831 5 C -0.166 4.166 6 C 0.257 3.743 7 O -0.263 6.263 8 N -0.315 5.315 9 C 0.135 3.865 10 C -0.382 4.382 11 C -0.061 4.061 12 C -0.330 4.330 13 C 0.148 3.852 14 C -0.458 4.458 15 H 0.100 0.900 16 C -0.168 4.168 17 N -0.273 5.273 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.187 1.187 21 H -0.203 1.203 22 N -0.194 5.194 23 O -0.289 6.289 24 C -0.020 4.020 25 C -0.207 4.207 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.232 0.768 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.662 -3.788 -0.204 14.179 hybrid contribution 0.542 0.148 0.421 0.702 sum -13.121 -3.640 0.218 13.618 Atomic orbital electron populations 1.21735 0.93728 1.02066 1.03113 1.22811 0.95820 0.84088 1.00612 1.87956 1.23958 1.26769 1.93277 1.22721 0.79177 0.97789 0.83396 1.21485 0.95046 0.98003 1.02115 1.20291 0.88522 0.84185 0.81343 1.91132 1.65498 1.33298 1.36405 1.43365 1.05784 1.24586 1.57733 1.18587 0.83392 0.91230 0.93268 1.20497 0.95139 1.00422 1.22177 1.20564 0.93229 0.96510 0.95774 1.21623 0.98759 0.97834 1.14753 1.18367 0.87179 0.90926 0.88684 1.19550 0.94017 1.01129 1.31137 0.90031 1.26128 0.95041 0.99475 0.96206 1.70270 1.05803 1.28251 1.22975 0.86553 0.80679 0.81420 0.79615 1.19761 1.18695 1.20346 1.68637 1.07065 1.24576 1.19089 1.88104 1.86360 1.30713 1.23733 1.22603 0.98475 0.86051 0.94834 1.21716 1.02955 1.01582 0.94443 0.91873 0.91259 0.91837 0.92523 0.93222 0.91888 0.87860 0.88062 0.76773 0.89086 0.88667 0.88621 0.91704 0.93281 0.93675 0.92282 0.90971 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.04 0.48 6.27 37.16 0.23 0.71 16 3 O -0.40 -5.66 10.20 -59.04 -0.60 -6.26 16 4 C 0.26 4.22 2.37 37.16 0.09 4.31 16 5 C -0.13 -1.90 5.78 -27.88 -0.16 -2.06 16 6 C 0.48 9.62 7.67 -10.99 -0.08 9.54 16 7 O -0.40 -9.91 11.29 -8.84 -0.10 -10.01 16 8 N -0.67 -13.23 5.38 -11.40 -0.06 -13.29 16 9 C 0.37 9.20 7.43 -154.97 -1.15 8.05 16 10 C -0.36 -8.10 9.95 -38.89 -0.39 -8.49 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.31 -7.82 9.83 -38.66 -0.38 -8.20 16 13 C 0.27 7.75 6.53 -85.00 -0.56 7.19 16 14 C -0.43 -11.84 9.13 -37.73 -0.34 -12.19 16 15 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 16 C 0.06 1.60 5.48 -17.35 -0.10 1.51 16 17 N -0.65 -18.01 9.17 55.55 0.51 -17.50 16 18 Si 0.89 19.27 29.56 -169.99 -5.03 14.24 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 N -0.47 -13.40 5.77 -10.25 -0.06 -13.46 16 23 O -0.37 -6.63 9.48 -64.76 -0.61 -7.24 16 24 C 0.06 0.84 5.81 37.15 0.22 1.06 16 25 C -0.15 -2.11 10.28 37.15 0.38 -1.72 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.62 4.75 -51.93 -0.25 0.37 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.05 7.48 -51.93 -0.39 0.66 16 32 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.40 6.04 8.70 -40.82 -0.36 5.69 16 35 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 38 H 0.27 6.99 8.29 -40.82 -0.34 6.66 16 39 H 0.05 0.74 8.00 -51.93 -0.42 0.33 16 40 H 0.05 0.58 5.57 -51.93 -0.29 0.29 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -33.51 357.24 -9.14 -42.65 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.31 Total: 7.95 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.26 Total: -2.47 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.39 Total: -44.25 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -1.32 Total: -23.51 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.51 -9.14 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.646 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds