Wall clock time and date at job start Tue Mar 31 2020 09:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76204 * 102.99980 * 2 1 4 4 C 1.39236 * 120.79701 * 179.97438 * 3 2 1 5 5 N 1.32277 * 119.10155 * 179.97438 * 4 3 2 6 6 C 1.32424 * 120.81907 * 0.02562 * 5 4 3 7 7 N 1.38721 * 119.12423 * 180.02562 * 6 5 4 8 8 C 1.46895 * 111.00043 * 55.69297 * 7 6 5 9 9 C 1.53235 * 109.34355 * 187.25256 * 8 7 6 10 10 H 1.09008 * 109.78226 * 65.97286 * 9 8 7 11 11 C 1.52999 * 109.63213 * 186.46075 * 9 8 7 12 12 N 1.47083 * 108.52181 * 306.17829 * 9 8 7 13 13 C 1.36936 * 120.87560 * 231.20571 * 12 9 8 14 14 H 1.07994 * 120.00808 * 52.71957 * 13 12 9 15 15 C 1.38816 * 119.99518 * 232.71800 * 13 12 9 16 16 N 1.31620 * 120.00286 * 18.81638 * 15 13 12 17 17 Si 1.86803 * 119.99814 * 198.81444 * 15 13 12 18 18 H 1.48502 * 109.47148 * 60.00044 * 17 15 13 19 19 H 1.48500 * 109.46883 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47163 * 300.00008 * 17 15 13 21 21 C 1.47077 * 118.23823 * 51.17628 * 12 9 8 22 22 H 1.09000 * 109.62979 * 68.53140 * 21 12 9 23 23 C 1.53005 * 109.62264 * 189.10865 * 21 12 9 24 24 C 1.46897 * 110.99868 * 179.97438 * 7 6 5 25 25 N 1.32426 * 121.75435 * 0.27463 * 6 5 4 26 26 C 1.32286 * 120.81583 * 359.43946 * 25 6 5 27 27 H 1.08995 * 109.46966 * 300.00001 * 1 2 3 28 28 H 1.08998 * 109.46859 * 59.99346 * 1 2 3 29 29 H 1.08995 * 109.46944 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.44777 * 359.95876 * 4 3 2 31 31 H 1.09010 * 109.49290 * 67.29386 * 8 7 6 32 32 H 1.08994 * 109.49569 * 307.21937 * 8 7 6 33 33 H 1.09001 * 109.46974 * 179.03348 * 11 9 8 34 34 H 1.08999 * 109.46823 * 59.03258 * 11 9 8 35 35 H 1.08994 * 109.47288 * 299.03125 * 11 9 8 36 36 H 0.96999 * 120.00205 * 182.59939 * 16 15 13 37 37 H 1.08994 * 109.47230 * 52.03054 * 23 21 12 38 38 H 1.09011 * 109.46520 * 172.02514 * 23 21 12 39 39 H 1.08999 * 109.47365 * 292.02184 * 23 21 12 40 40 H 1.08995 * 109.49661 * 52.78833 * 24 7 6 41 41 H 1.09001 * 109.51778 * 292.71446 * 24 7 6 42 42 H 1.07999 * 120.44684 * 180.27583 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5361 2.1425 0.0005 5 7 3.7954 3.4396 0.0000 6 6 2.8132 4.3278 -0.0005 7 7 3.1253 5.6794 -0.0016 8 6 3.9966 6.0176 -1.1348 9 6 4.4636 7.4708 -1.0000 10 1 5.1047 7.5726 -0.1242 11 6 5.2381 7.8804 -2.2543 12 7 3.2795 8.3299 -0.8478 13 6 3.1039 9.4317 -1.6418 14 1 3.1567 9.3370 -2.7163 15 6 2.8578 10.6703 -1.0655 16 7 3.1520 10.8773 0.2006 17 14 2.1093 12.0436 -2.0870 18 1 0.7818 11.6147 -2.5960 19 1 1.9489 13.2560 -1.2446 20 1 3.0027 12.3519 -3.2325 21 6 2.2888 7.9739 0.1793 22 1 2.7191 8.1214 1.1699 23 6 1.0449 8.8504 0.0192 24 6 1.9074 6.5008 -0.0027 25 7 1.5410 3.9601 0.0049 26 6 1.2055 2.6805 -0.0001 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 4.3418 1.4232 0.0016 31 1 3.4441 5.8982 -2.0669 32 1 4.8628 5.3560 -1.1378 33 1 5.5542 8.9196 -2.1630 34 1 4.5969 7.7711 -3.1290 35 1 6.1148 7.2424 -2.3645 36 1 2.9455 11.7304 0.6133 37 1 0.6962 8.8012 -1.0122 38 1 0.2600 8.4923 0.6856 39 1 1.2924 9.8817 0.2704 40 1 1.2581 6.1898 0.8157 41 1 1.3839 6.3747 -0.9504 42 1 0.1660 2.3873 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882519600.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:10 Heat of formation + Delta-G solvation = 99.028836 kcal Electronic energy + Delta-G solvation = -23822.837631 eV Core-core repulsion = 20544.913402 eV Total energy + Delta-G solvation = -3277.924229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.09464 -38.39349 -35.14566 -33.87093 -32.84197 -31.78760 -30.65847 -29.34573 -27.65031 -26.27394 -25.61313 -24.23461 -23.83344 -21.87586 -20.31342 -19.20815 -17.85384 -17.61475 -17.23024 -16.20050 -15.32684 -15.18136 -14.91858 -14.39238 -14.28551 -14.22986 -13.94958 -13.66744 -13.63454 -13.24179 -13.03778 -12.89315 -12.05947 -11.62212 -11.55937 -11.42408 -11.15865 -10.95142 -10.90436 -10.80502 -10.67538 -10.51433 -10.48345 -10.38620 -10.21805 -9.92035 -9.80950 -9.54522 -9.18379 -8.61182 -8.13321 -7.42965 -6.39226 -5.75119 -3.54844 0.80452 1.06812 1.20322 2.07380 3.32897 3.39139 3.39859 3.42234 3.75501 4.12790 4.39462 4.42651 4.69092 4.69301 4.80848 4.88020 5.22193 5.26629 5.30015 5.46308 5.66667 5.76610 5.91623 6.05637 6.08722 6.21436 6.34820 6.40068 6.41572 6.56454 6.66305 6.79653 6.81489 6.93869 7.02890 7.12723 7.27519 7.47486 7.55564 7.69469 7.85910 8.22753 8.59545 9.18238 9.71700 10.50202 11.17452 Molecular weight = 308.14amu Principal moments of inertia in cm(-1) A = 0.029280 B = 0.003388 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.043491 B = 8263.158935 C = 8781.424245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.097 6.097 3 C -0.250 4.250 4 C 0.202 3.798 5 N -0.517 5.517 6 C 0.498 3.502 7 N -0.449 5.449 8 C 0.060 3.940 9 C 0.170 3.830 10 H 0.038 0.962 11 C -0.129 4.129 12 N -0.580 5.580 13 C -0.265 4.265 14 H 0.053 0.947 15 C 0.037 3.963 16 N -0.873 5.873 17 Si 0.884 3.116 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.196 3.804 22 H 0.038 0.962 23 C -0.140 4.140 24 C 0.056 3.944 25 N -0.535 5.535 26 C 0.169 3.831 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.171 0.829 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.038 0.962 36 H 0.255 0.745 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 -18.818 -0.592 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.140 5.860 3 C -0.369 4.369 4 C 0.028 3.972 5 N -0.235 5.235 6 C 0.142 3.858 7 N -0.166 5.166 8 C -0.067 4.067 9 C 0.064 3.936 10 H 0.055 0.945 11 C -0.187 4.187 12 N -0.304 5.304 13 C -0.395 4.395 14 H 0.070 0.930 15 C -0.166 4.166 16 N -0.513 5.513 17 Si 0.712 3.288 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.204 1.204 21 C 0.089 3.911 22 H 0.056 0.944 23 C -0.198 4.198 24 C -0.072 4.072 25 N -0.255 5.255 26 C -0.005 4.005 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.128 0.872 30 H 0.188 0.812 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.816 -18.386 -0.059 18.600 hybrid contribution -1.955 0.700 -0.819 2.232 sum -4.771 -17.686 -0.878 18.339 Atomic orbital electron populations 1.23678 0.94821 1.07336 1.05807 1.85275 1.06349 1.01046 1.93365 1.23239 0.99511 0.99307 1.14812 1.22761 0.93617 0.91681 0.89183 1.68117 1.36058 1.01716 1.17586 1.21544 0.83825 0.91957 0.88474 1.58481 1.19211 0.97444 1.41449 1.22910 0.95155 1.00645 0.87987 1.20603 0.89838 0.86690 0.96500 0.94462 1.21678 0.97863 1.01813 0.97319 1.44093 1.17798 1.27866 1.40662 1.18616 1.47350 0.84692 0.88794 0.92967 1.25531 0.98210 0.97022 0.95809 1.70134 1.45082 1.23889 1.12161 0.86707 0.80059 0.81790 0.80215 1.20477 1.21503 1.20449 1.20403 0.90258 0.87466 0.92930 0.94419 1.21953 0.94868 1.03095 0.99907 1.22948 0.87887 0.95149 1.01217 1.68443 1.20369 1.18530 1.18124 1.23063 0.98995 0.87386 0.91028 0.89639 0.89658 0.87161 0.81177 0.94209 0.90047 0.91173 0.93209 0.94323 0.93454 0.93236 0.95740 0.89170 0.90826 0.93485 0.82067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.18 101.05 0.93 0.07 16 2 S -0.10 -0.87 22.60 -107.50 -2.43 -3.29 16 3 C -0.25 -2.98 6.14 -38.84 -0.24 -3.22 16 4 C 0.20 2.65 11.09 -16.99 -0.19 2.46 16 5 N -0.52 -8.59 9.62 -13.72 -0.13 -8.72 16 6 C 0.50 9.04 7.18 -322.52 -2.32 6.72 16 7 N -0.45 -8.92 4.70 -175.03 -0.82 -9.75 16 8 C 0.06 1.17 4.79 -3.71 -0.02 1.15 16 9 C 0.17 3.69 3.66 -67.49 -0.25 3.44 16 10 H 0.04 0.88 8.14 -51.92 -0.42 0.45 16 11 C -0.13 -2.50 8.18 37.16 0.30 -2.20 16 12 N -0.58 -14.14 2.82 -157.00 -0.44 -14.58 16 13 C -0.26 -6.87 6.76 -15.06 -0.10 -6.98 16 14 H 0.05 1.37 7.16 -52.49 -0.38 1.00 16 15 C 0.04 0.97 3.36 -17.43 -0.06 0.91 16 16 N -0.87 -24.25 11.71 55.49 0.65 -23.60 16 17 Si 0.88 20.60 29.59 -169.99 -5.03 15.57 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 C 0.20 4.55 3.14 -67.49 -0.21 4.33 16 22 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 23 C -0.14 -3.17 7.95 37.16 0.30 -2.87 16 24 C 0.06 1.15 4.09 -3.70 -0.02 1.13 16 25 N -0.54 -8.94 8.65 -13.72 -0.12 -9.06 16 26 C 0.17 2.19 10.62 -16.99 -0.18 2.01 16 27 H 0.08 0.46 7.79 -51.93 -0.40 0.06 16 28 H 0.08 0.46 7.79 -51.93 -0.40 0.06 16 29 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.17 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.08 1.48 7.51 -51.93 -0.39 1.09 16 33 H 0.07 1.49 7.65 -51.93 -0.40 1.09 16 34 H 0.05 0.96 7.61 -51.93 -0.40 0.57 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 37 H 0.05 1.13 7.68 -51.93 -0.40 0.73 16 38 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 39 H 0.09 2.26 4.94 -51.93 -0.26 2.00 16 40 H 0.07 1.45 7.62 -51.93 -0.40 1.05 16 41 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 42 H 0.16 1.56 6.05 -52.49 -0.32 1.24 16 LS Contribution 342.33 15.07 5.16 5.16 Total: -1.00 -29.42 342.33 -11.47 -40.89 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.25 Total: 0.42 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -2.05 Total: 6.96 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.86 Total: -65.71 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -2.43 Total: -3.29 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.42 -11.47 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519600.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.920 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds