Wall clock time and date at job start Tue Mar 31 2020 09:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99895 * 2 1 4 4 C 1.38701 * 120.03758 * 359.97438 * 3 2 1 5 5 C 1.38223 * 120.11818 * 179.97438 * 4 3 2 6 6 C 1.38220 * 120.19567 * 0.04112 * 5 4 3 7 7 C 1.38785 * 120.07508 * 359.97438 * 6 5 4 8 8 N 1.40175 * 120.05718 * 179.72303 * 7 6 5 9 9 C 1.34769 * 120.00192 * 24.79446 * 8 7 6 10 10 O 1.21597 * 120.00125 * 5.61886 * 9 8 7 11 11 N 1.34783 * 120.00384 * 185.62042 * 9 8 7 12 12 C 1.46498 * 119.99552 * 0.02562 * 11 9 8 13 13 C 1.46498 * 120.00510 * 180.02562 * 11 9 8 14 14 H 1.09006 * 109.46941 * 0.02562 * 13 11 9 15 15 C 1.52995 * 109.47191 * 240.00349 * 13 11 9 16 16 C 1.50700 * 109.47055 * 119.99945 * 13 11 9 17 17 H 1.07997 * 120.00065 * 0.02562 * 16 13 11 18 18 C 1.37880 * 119.99804 * 180.02562 * 16 13 11 19 19 N 1.31512 * 120.00048 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 119.99748 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47304 * 89.99878 * 20 18 16 22 22 H 1.48501 * 109.47048 * 209.99529 * 20 18 16 23 23 H 1.48500 * 109.47326 * 330.00030 * 20 18 16 24 24 C 1.38939 * 120.04007 * 179.97438 * 3 2 1 25 25 O 1.36081 * 120.09388 * 0.04281 * 24 3 2 26 26 C 1.42902 * 117.00058 * 269.97563 * 25 24 3 27 27 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47629 * 300.00009 * 1 2 3 29 29 H 1.09002 * 109.46932 * 60.00294 * 1 2 3 30 30 H 1.08003 * 119.93800 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.90017 * 180.02562 * 5 4 3 32 32 H 1.07999 * 119.95550 * 179.97438 * 6 5 4 33 33 H 0.97005 * 119.99913 * 204.80276 * 8 7 6 34 34 H 1.09001 * 109.47519 * 89.99785 * 12 11 9 35 35 H 1.09003 * 109.47110 * 210.00012 * 12 11 9 36 36 H 1.09009 * 109.47410 * 329.99802 * 12 11 9 37 37 H 1.08996 * 109.47499 * 59.99646 * 15 13 11 38 38 H 1.09000 * 109.47278 * 179.97438 * 15 13 11 39 39 H 1.09006 * 109.47049 * 299.99776 * 15 13 11 40 40 H 0.96996 * 120.00212 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.46715 * 180.02562 * 26 25 24 42 42 H 1.09001 * 109.46850 * 300.00075 * 26 25 24 43 43 H 1.08993 * 109.46934 * 60.00485 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2917 2.3755 -0.0005 5 6 1.9175 3.6080 0.0000 6 6 3.2974 3.6870 0.0002 7 6 4.0604 2.5277 0.0004 8 7 5.4599 2.6083 -0.0052 9 6 6.0736 3.7061 0.4788 10 8 5.4208 4.5819 1.0132 11 7 7.4110 3.8335 0.3707 12 6 8.1975 2.7787 -0.2735 13 6 8.0783 5.0266 0.8974 14 1 7.3365 5.6935 1.3370 15 6 8.8040 5.7488 -0.2395 16 6 9.0754 4.6203 1.9519 17 1 9.1999 3.5776 2.2041 18 6 9.8286 5.5798 2.5945 19 7 9.6774 6.8494 2.2870 20 14 11.0650 5.0761 3.9010 21 1 12.3827 4.8235 3.2645 22 1 11.1993 6.1652 4.9016 23 1 10.5961 3.8390 4.5757 24 6 3.4338 1.2855 0.0005 25 8 4.1777 0.1460 0.0002 26 6 4.5323 -0.3977 1.2733 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2132 2.3185 -0.0014 31 1 1.3264 4.5119 0.0000 32 1 3.7823 4.6520 0.0002 33 1 5.9865 1.8738 -0.3577 34 1 8.2747 2.9837 -1.3413 35 1 9.1954 2.7507 0.1642 36 1 7.7076 1.8166 -0.1228 37 1 8.0829 6.0426 -1.0021 38 1 9.3001 6.6368 0.1523 39 1 9.5458 5.0817 -0.6787 40 1 10.2070 7.5245 2.7393 41 1 5.1233 -1.3023 1.1301 42 1 5.1174 0.3339 1.8305 43 1 3.6270 -0.6392 1.8301 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889494859.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:48 Heat of formation + Delta-G solvation = -56.813874 kcal Electronic energy + Delta-G solvation = -26073.234112 eV Core-core repulsion = 22313.506414 eV Total energy + Delta-G solvation = -3759.727698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.81039 -39.59839 -38.10396 -36.90135 -35.44199 -34.23586 -32.75500 -30.12674 -29.75568 -28.48746 -27.49255 -26.59331 -26.14281 -25.23872 -22.88903 -22.31592 -20.95788 -19.26298 -18.52836 -17.61036 -17.34651 -16.57075 -16.18294 -16.03046 -15.74198 -15.18349 -15.08204 -14.90298 -14.61202 -14.43091 -14.15085 -13.37731 -13.24461 -12.83185 -12.58423 -12.54141 -12.46496 -11.96257 -11.84976 -11.66290 -11.50316 -11.34678 -11.12376 -11.07573 -10.85388 -10.70077 -10.31022 -10.19474 -10.18656 -9.97266 -9.27997 -9.17000 -8.45652 -8.16695 -7.92496 -7.54213 -6.09790 -4.17810 1.22768 1.49220 2.86497 3.24897 3.32171 3.34175 3.40222 3.44430 3.76641 4.11717 4.33563 4.48970 4.80169 4.97437 5.00234 5.11597 5.21665 5.25066 5.33532 5.38883 5.39115 5.47630 5.57322 5.62175 5.70690 5.95238 6.16192 6.24620 6.33266 6.36563 6.65259 6.70125 6.79064 6.99044 7.02127 7.08877 7.15732 7.42494 7.65230 7.66373 7.78807 8.03474 8.18027 8.56861 8.82349 9.12959 9.48966 10.95564 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.023399 B = 0.003419 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.357745 B = 8186.714762 C = 8603.401532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.130 3.870 4 C -0.230 4.230 5 C -0.061 4.061 6 C -0.159 4.159 7 C 0.211 3.789 8 N -0.685 5.685 9 C 0.696 3.304 10 O -0.575 6.575 11 N -0.600 5.600 12 C 0.082 3.918 13 C 0.272 3.728 14 H 0.066 0.934 15 C -0.147 4.147 16 C -0.528 4.528 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.012 3.988 25 O -0.322 6.322 26 C 0.032 3.968 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.158 0.842 33 H 0.408 0.592 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.012 0.988 38 H 0.095 0.905 39 H 0.030 0.970 40 H 0.264 0.736 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.055 -12.455 -6.119 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.084 3.916 4 C -0.250 4.250 5 C -0.080 4.080 6 C -0.180 4.180 7 C 0.112 3.888 8 N -0.332 5.332 9 C 0.398 3.602 10 O -0.453 6.453 11 N -0.334 5.334 12 C -0.062 4.062 13 C 0.172 3.828 14 H 0.084 0.916 15 C -0.205 4.205 16 C -0.567 4.567 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.525 5.525 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.036 4.036 25 O -0.238 6.238 26 C -0.063 4.063 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.175 0.825 33 H 0.246 0.754 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.113 0.887 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.123 -11.865 -5.824 19.343 hybrid contribution 0.739 -0.546 0.808 1.223 sum -13.385 -12.411 -5.016 18.930 Atomic orbital electron populations 1.23048 0.78745 1.03656 1.01353 1.86123 1.20940 1.26416 1.88708 1.18953 0.90723 0.84723 0.97197 1.21038 0.99722 0.91882 1.12388 1.20878 0.94099 0.96907 0.96095 1.21473 0.93251 0.99163 1.04075 1.17624 0.82881 0.92236 0.96038 1.42979 1.04278 1.21020 1.64948 1.15982 0.82971 0.81719 0.79511 1.90835 1.63856 1.41493 1.49089 1.47655 1.03253 1.22939 1.59592 1.21582 0.98393 0.89129 0.97068 1.18924 0.92106 0.80561 0.91206 0.91634 1.22102 0.98828 1.02586 0.97010 1.21326 1.21163 0.93706 1.20469 0.92251 1.24878 0.97083 0.94814 0.96925 1.69874 1.40703 0.99905 1.42003 0.86484 0.81223 0.78278 0.81340 1.20597 1.21078 1.19962 1.17372 0.86699 0.85295 1.14200 1.86100 1.70307 1.38438 1.29004 1.23004 0.99696 0.98464 0.85099 0.88453 0.92732 0.92642 0.85378 0.85277 0.82454 0.75405 0.93572 0.89514 0.93493 0.96913 0.88703 0.95128 0.92629 0.89064 0.93677 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.88 10.28 -34.34 -0.35 -4.24 16 3 C 0.13 1.82 6.70 -39.15 -0.26 1.56 16 4 C -0.23 -2.83 9.04 -39.42 -0.36 -3.19 16 5 C -0.06 -0.81 10.03 -39.59 -0.40 -1.21 16 6 C -0.16 -2.64 8.72 -39.39 -0.34 -2.98 16 7 C 0.21 3.56 6.44 -83.51 -0.54 3.02 16 8 N -0.68 -11.84 5.17 -14.12 -0.07 -11.91 16 9 C 0.70 14.75 8.09 -86.92 -0.70 14.05 16 10 O -0.57 -14.03 12.83 5.28 0.07 -13.96 16 11 N -0.60 -12.77 2.75 -181.00 -0.50 -13.27 16 12 C 0.08 1.37 9.25 59.85 0.55 1.92 16 13 C 0.27 6.86 2.64 -69.09 -0.18 6.68 16 14 H 0.07 1.91 6.90 -51.93 -0.36 1.56 16 15 C -0.15 -3.46 8.97 37.16 0.33 -3.13 16 16 C -0.53 -14.07 7.99 -34.44 -0.28 -14.35 16 17 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 20 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.01 0.19 5.75 -38.99 -0.22 -0.04 16 25 O -0.32 -4.77 9.61 -34.61 -0.33 -5.10 16 26 C 0.03 0.40 11.13 101.05 1.13 1.52 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 29 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 30 H 0.13 1.18 6.29 -52.48 -0.33 0.85 16 31 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.16 2.96 5.77 -52.49 -0.30 2.66 16 33 H 0.41 6.14 6.03 -40.82 -0.25 5.90 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.51 7.02 -51.93 -0.36 1.15 16 36 H 0.05 0.64 6.29 -51.92 -0.33 0.32 16 37 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 39 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -31.75 352.60 -6.56 -38.31 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.92 Total: 6.47 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.37 Total: 6.74 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.06 Total: -49.35 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.62 Total: -23.30 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.75 -6.56 -38.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889494859.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.509 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds