Wall clock time and date at job start Tue Mar 31 2020 10:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46982 * 2 1 4 4 C 1.34974 * 117.00081 * 179.97438 * 3 2 1 5 5 O 1.21708 * 120.00288 * 0.27725 * 4 3 2 6 6 C 1.41555 * 119.99940 * 180.02562 * 4 3 2 7 7 C 1.38825 * 126.35657 * 179.97438 * 6 4 3 8 8 N 1.39450 * 126.55395 * 359.97438 * 7 6 4 9 9 C 1.34782 * 119.99479 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00347 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99851 * 180.02562 * 9 8 7 12 12 C 1.52994 * 109.47252 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47486 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47501 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99580 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00043 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00148 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99828 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47273 * 60.00155 * 18 16 14 20 20 H 1.48501 * 109.47154 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46965 * 300.00084 * 18 16 14 22 22 C 1.40455 * 106.88452 * 180.02562 * 7 6 4 23 23 C 1.35223 * 107.97621 * 0.02562 * 22 7 6 24 24 N 1.35620 * 109.16537 * 359.72729 * 23 22 7 25 25 C 1.46500 * 125.65528 * 180.27033 * 24 23 22 26 26 H 1.09009 * 109.46886 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47119 * 299.99286 * 1 2 3 28 28 H 1.08995 * 109.47465 * 60.00235 * 1 2 3 29 29 H 1.08999 * 109.47692 * 240.00243 * 2 1 3 30 30 H 1.09000 * 109.47887 * 119.99958 * 2 1 3 31 31 H 0.97000 * 120.00504 * 0.02562 * 8 7 6 32 32 H 1.09004 * 109.46970 * 300.00518 * 11 9 8 33 33 H 1.08995 * 109.47255 * 60.00003 * 11 9 8 34 34 H 1.08996 * 109.47569 * 300.00346 * 12 11 9 35 35 H 1.09003 * 109.46978 * 60.00038 * 12 11 9 36 36 H 1.09004 * 109.47010 * 300.00513 * 13 12 11 37 37 H 1.09003 * 109.46825 * 60.00135 * 13 12 11 38 38 H 0.96998 * 120.00461 * 180.02562 * 17 16 14 39 39 H 1.08003 * 126.00762 * 180.02562 * 22 7 6 40 40 H 1.08002 * 125.41777 * 179.97438 * 23 22 7 41 41 H 1.08998 * 109.46757 * 270.19633 * 25 24 23 42 42 H 1.08994 * 109.47306 * 30.19945 * 25 24 23 43 43 H 1.09000 * 109.46816 * 150.20489 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3444 1.5242 0.0005 5 8 4.0859 0.5591 -0.0041 6 6 3.8854 2.8323 0.0011 7 6 5.2330 3.1655 0.0022 8 7 6.3082 2.2774 0.0034 9 6 7.5711 2.7483 0.0039 10 8 7.7724 3.9442 0.0037 11 6 8.7330 1.7886 0.0046 12 6 10.0448 2.5760 0.0057 13 6 11.2245 1.6017 0.0071 14 6 12.5166 2.3773 0.0087 15 1 12.4982 3.4571 0.0092 16 6 13.7222 1.7083 0.0096 17 7 13.7446 0.3933 0.0086 18 14 15.3238 2.6697 0.0110 19 1 15.3870 3.5245 1.2236 20 1 16.4688 1.7240 0.0112 21 1 15.3889 3.5247 -1.2015 22 6 5.3064 4.5682 0.0030 23 6 4.0438 5.0521 0.0030 24 7 3.1696 4.0154 -0.0039 25 6 1.7091 4.1299 -0.0117 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 6.1472 1.3209 0.0032 32 1 8.6854 1.1612 0.8947 33 1 8.6863 1.1609 -0.8852 34 1 10.0925 3.2037 -0.8841 35 1 10.0912 3.2034 0.8958 36 1 11.1765 0.9743 0.8972 37 1 11.1783 0.9739 -0.8828 38 1 14.5927 -0.0774 0.0096 39 1 6.2121 5.1566 0.0036 40 1 3.7744 6.0980 0.0040 41 1 1.3415 4.1598 1.0140 42 1 1.4191 5.0447 -0.5284 43 1 1.2800 3.2702 -0.5265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891963928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:43 Heat of formation + Delta-G solvation = -89.380325 kcal Electronic energy + Delta-G solvation = -24717.621026 eV Core-core repulsion = 20956.481141 eV Total energy + Delta-G solvation = -3761.139885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.90981 -40.24649 -39.40149 -37.00856 -34.95765 -34.14350 -32.53933 -32.11101 -31.77100 -29.75619 -28.04893 -26.24592 -24.70413 -23.78023 -22.65013 -21.78955 -20.56826 -19.88664 -19.55733 -18.31360 -17.32723 -17.05494 -16.63892 -16.09020 -15.83915 -15.71733 -15.24756 -15.06539 -14.40442 -14.27876 -14.13562 -13.65864 -13.53717 -13.30804 -13.06400 -12.72441 -12.68622 -12.51767 -12.26791 -12.22074 -11.86564 -11.79353 -11.36858 -10.89309 -10.82415 -10.77130 -10.70844 -10.59799 -10.51589 -9.62929 -9.62602 -9.25285 -9.00113 -8.64101 -8.27933 -7.86660 -5.93595 -3.95071 0.88149 2.38742 2.46616 2.55008 2.69022 3.31807 3.31836 3.39532 3.42866 3.46726 4.49565 4.50765 4.52527 4.55067 4.61305 4.71817 4.87385 4.88252 4.94479 5.16752 5.20466 5.36266 5.42251 5.43752 5.53089 5.64197 5.70333 5.73641 5.85143 6.13692 6.24053 6.29230 6.56879 6.75494 6.86314 6.94743 7.00953 7.19567 7.56970 7.59578 7.74960 7.88019 8.06977 8.34617 8.50588 9.11769 9.68532 11.17876 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.002390 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.407233 B =11712.899706 C =12763.644860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.544 3.456 5 O -0.519 6.519 6 C -0.115 4.115 7 C 0.199 3.801 8 N -0.649 5.649 9 C 0.514 3.486 10 O -0.512 6.512 11 C -0.137 4.137 12 C -0.095 4.095 13 C 0.020 3.980 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.222 4.222 23 C 0.063 3.937 24 N -0.428 5.428 25 C 0.074 3.926 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.421 0.579 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.175 0.825 40 H 0.177 0.823 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.778 3.714 -0.100 31.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.277 6.277 4 C 0.394 3.606 5 O -0.410 6.410 6 C -0.223 4.223 7 C 0.092 3.908 8 N -0.294 5.294 9 C 0.304 3.696 10 O -0.386 6.386 11 C -0.177 4.177 12 C -0.133 4.133 13 C -0.017 4.017 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.249 4.249 23 C -0.074 4.074 24 N -0.106 5.106 25 C -0.067 4.067 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.260 0.740 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.192 0.808 40 H 0.194 0.806 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -31.629 3.995 -0.107 31.880 hybrid contribution 0.703 -0.266 0.027 0.752 sum -30.926 3.729 -0.081 31.150 Atomic orbital electron populations 1.21812 0.92646 1.03099 1.03252 1.22629 0.95206 0.80774 1.02742 1.86172 1.24202 1.32215 1.85149 1.18290 0.80508 0.88093 0.73720 1.90851 1.59851 1.41354 1.48920 1.17525 0.89770 0.84252 1.30786 1.17492 0.84857 0.91082 0.97352 1.43458 1.04201 1.10506 1.71256 1.21541 0.83218 0.90512 0.74357 1.90583 1.84738 1.16640 1.46639 1.21886 0.93200 0.98263 1.04339 1.21467 0.91448 0.98518 1.01830 1.19135 0.91228 0.94123 0.97239 1.21227 0.90978 0.93155 1.50259 0.92597 1.25025 0.99230 0.94873 0.95432 1.69952 1.26079 1.06582 1.51099 0.86647 0.82940 0.79696 0.78654 1.20240 1.21376 1.20243 1.21395 0.98179 0.92030 1.13269 1.22194 0.88729 0.93294 1.03211 1.43783 1.06512 1.04545 1.55793 1.22199 0.76149 1.04630 1.03714 0.90212 0.91583 0.91616 0.91365 0.91360 0.74001 0.88850 0.88846 0.92521 0.92526 0.96528 0.96522 0.93022 0.80766 0.80585 0.90706 0.89651 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.28 37.16 0.38 -0.32 16 2 C 0.06 0.47 6.10 37.16 0.23 0.69 16 3 O -0.36 -3.49 7.41 -41.24 -0.31 -3.79 16 4 C 0.54 6.85 7.72 32.00 0.25 7.10 16 5 O -0.52 -7.55 14.74 -19.43 -0.29 -7.83 16 6 C -0.11 -1.46 6.75 -83.48 -0.56 -2.02 16 7 C 0.20 2.91 6.91 -83.34 -0.58 2.34 16 8 N -0.65 -9.82 5.39 -9.61 -0.05 -9.87 16 9 C 0.51 8.81 7.79 -10.98 -0.09 8.72 16 10 O -0.51 -9.97 13.16 5.56 0.07 -9.90 16 11 C -0.14 -2.37 5.70 -27.89 -0.16 -2.53 16 12 C -0.09 -2.06 4.44 -26.73 -0.12 -2.18 16 13 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 14 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 18 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.22 -2.99 9.61 -39.82 -0.38 -3.37 16 23 C 0.06 0.60 11.35 -16.95 -0.19 0.41 16 24 N -0.43 -4.14 3.18 -121.52 -0.39 -4.53 16 25 C 0.07 0.41 10.52 59.85 0.63 1.04 16 26 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.42 5.94 6.79 -40.82 -0.28 5.66 16 32 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.06 1.27 8.10 -51.93 -0.42 0.84 16 35 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.18 2.62 5.97 -52.48 -0.31 2.30 16 40 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.10 0.57 6.11 -51.93 -0.32 0.25 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -35.14 363.45 -7.27 -42.40 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.36 Total: 1.14 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.14 Total: -3.64 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.30 Total: -41.07 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.52 Total: -21.53 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.14 -7.27 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891963928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.976 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds