Wall clock time and date at job start Tue Mar 31 2020 10:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46848 * 2 1 4 4 C 1.46501 * 120.00063 * 270.00463 * 3 2 1 5 5 C 1.50701 * 109.47192 * 269.99820 * 4 3 2 6 6 H 1.08004 * 119.99831 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00508 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00074 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00343 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47040 * 59.99925 * 9 7 5 11 11 H 1.48501 * 109.47308 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46980 * 299.99951 * 9 7 5 13 13 C 1.34776 * 119.99955 * 89.99817 * 3 2 1 14 14 O 1.21280 * 119.99735 * 179.97438 * 13 3 2 15 15 C 1.50691 * 119.99948 * 0.02562 * 13 3 2 16 16 C 1.53004 * 109.47287 * 179.97438 * 15 13 3 17 17 N 1.46501 * 109.47321 * 179.97438 * 16 15 13 18 18 C 1.34521 * 125.20197 * 270.01897 * 17 16 15 19 19 O 1.21398 * 125.79619 * 0.02562 * 18 17 16 20 20 C 1.47962 * 108.40788 * 179.97438 * 18 17 16 21 21 C 1.50701 * 126.60232 * 180.26151 * 20 18 17 22 22 C 1.34324 * 106.79691 * 359.97438 * 20 18 17 23 23 C 1.50702 * 126.60085 * 179.97438 * 22 20 18 24 24 C 1.34520 * 125.20701 * 89.99604 * 17 16 15 25 25 O 1.21396 * 125.79230 * 0.05853 * 24 17 16 26 26 H 1.09006 * 109.46631 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46956 * 299.99723 * 1 2 3 28 28 H 1.08999 * 109.47646 * 59.99919 * 1 2 3 29 29 H 1.09001 * 109.46956 * 240.00277 * 2 1 3 30 30 H 1.08994 * 109.47211 * 119.99923 * 2 1 3 31 31 H 1.09007 * 109.47326 * 29.99715 * 4 3 2 32 32 H 1.08997 * 109.47439 * 150.00208 * 4 3 2 33 33 H 0.96996 * 120.00521 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47692 * 59.99329 * 15 13 3 35 35 H 1.09000 * 109.47401 * 299.99011 * 15 13 3 36 36 H 1.08999 * 109.47636 * 59.99001 * 16 15 13 37 37 H 1.09001 * 109.46885 * 299.99582 * 16 15 13 38 38 H 1.08996 * 109.47507 * 269.68788 * 21 20 18 39 39 H 1.09007 * 109.46838 * 29.68684 * 21 20 18 40 40 H 1.09004 * 109.47500 * 149.68188 * 21 20 18 41 41 H 1.08999 * 109.47129 * 90.00328 * 23 22 20 42 42 H 1.08998 * 109.46823 * 209.99937 * 23 22 20 43 43 H 1.08999 * 109.47564 * 330.00289 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8352 -1.7039 6 1 4.3426 1.2304 -1.0963 7 6 4.1489 2.3898 -2.8780 8 7 3.3486 3.1251 -3.6186 9 14 5.9129 2.0959 -3.4177 10 1 6.1401 0.6391 -3.5950 11 1 6.1604 2.7960 -4.7037 12 1 6.8408 2.6193 -2.3831 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9923 1.3060 2.4722 16 6 2.3241 2.2432 3.6352 17 7 2.0798 1.5526 4.9039 18 6 0.9142 1.5535 5.5754 19 8 -0.1022 2.1221 5.2329 20 6 1.0810 0.7427 6.8019 21 6 0.0305 0.4673 7.8467 22 6 2.3471 0.2942 6.8015 23 6 2.9924 -0.5760 7.8492 24 6 2.9867 0.8203 5.5754 25 8 4.1349 0.6244 5.2334 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5815 1.6878 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6745 3.5156 -4.4445 34 1 2.6227 0.4188 2.5298 35 1 0.9444 1.0115 2.5302 36 1 1.6940 3.1308 3.5778 37 1 3.3720 2.5374 3.5771 38 1 0.0732 1.2374 8.6168 39 1 -0.9552 0.4732 7.3812 40 1 0.2134 -0.5081 8.2976 41 1 2.8507 -1.6247 7.5881 42 1 4.0586 -0.3548 7.8987 43 1 2.5348 -0.3778 8.8184 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900325604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:51 Heat of formation + Delta-G solvation = -72.813845 kcal Electronic energy + Delta-G solvation = -25522.409664 eV Core-core repulsion = 21761.988155 eV Total energy + Delta-G solvation = -3760.421509 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.49334 -39.16257 -38.83231 -36.50862 -35.68553 -35.20616 -32.87168 -31.68563 -30.32155 -30.09096 -27.95493 -26.62287 -24.60010 -24.09647 -23.01974 -22.11341 -20.40251 -19.97818 -18.42972 -17.42580 -16.78827 -16.48120 -16.21645 -16.03458 -15.47205 -15.36035 -14.96876 -14.32362 -14.23825 -13.98779 -13.90198 -13.85227 -13.46127 -13.39847 -13.22940 -12.91354 -12.82374 -12.68962 -12.48470 -12.17043 -12.00823 -11.63676 -11.28674 -11.13807 -10.93341 -10.84897 -10.69848 -10.52522 -10.40564 -10.13115 -10.04353 -9.67753 -9.64868 -8.96151 -8.42245 -7.69177 -6.03375 -4.08257 -0.20583 2.13722 2.23152 2.58144 3.32778 3.34630 3.37226 3.37508 3.42610 3.81825 3.93746 4.45852 4.49570 4.59541 4.90297 4.93698 4.98419 5.03131 5.08884 5.12361 5.18659 5.28348 5.30886 5.38050 5.39631 5.48837 5.52394 5.60640 5.67606 5.73684 5.81779 5.95451 6.04457 6.22431 6.48427 6.49497 6.97170 7.04948 7.41887 7.44447 7.53088 7.92656 8.23988 8.38436 8.88706 9.04841 9.56799 11.04728 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020539 B = 0.003226 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.921989 B = 8678.607555 C = 9277.050271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.513 3.487 14 O -0.542 6.542 15 C -0.158 4.158 16 C 0.130 3.870 17 N -0.586 5.586 18 C 0.549 3.451 19 O -0.454 6.454 20 C -0.128 4.128 21 C -0.095 4.095 22 C -0.126 4.126 23 C -0.096 4.096 24 C 0.547 3.453 25 O -0.451 6.451 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.996 -10.302 23.623 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.326 5.326 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.298 3.702 14 O -0.420 6.420 15 C -0.199 4.199 16 C 0.010 3.990 17 N -0.328 5.328 18 C 0.337 3.663 19 O -0.325 6.325 20 C -0.133 4.133 21 C -0.152 4.152 22 C -0.131 4.131 23 C -0.152 4.152 24 C 0.336 3.664 25 O -0.321 6.321 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.695 -9.323 22.936 25.647 hybrid contribution 0.964 -0.199 -0.638 1.173 sum -5.730 -9.521 22.298 24.914 Atomic orbital electron populations 1.22222 0.96709 1.01437 1.02389 1.21430 0.93555 0.84167 1.02694 1.48243 1.63382 1.13261 1.07700 1.19285 0.96296 0.93662 0.77995 1.21401 0.96914 1.32018 1.06311 0.92505 1.24930 0.97874 0.94898 0.96355 1.69920 1.35725 1.33412 1.14348 0.86556 0.84784 0.78252 0.77820 1.20248 1.21170 1.20141 1.19910 0.78682 0.86814 0.84772 1.90686 1.46044 1.17997 1.87237 1.22032 1.03804 1.00276 0.93790 1.21513 1.05075 0.94628 0.77772 1.46834 1.13619 1.48613 1.23750 1.19203 0.82651 0.80133 0.84300 1.90802 1.29279 1.41547 1.70829 1.23036 0.96322 0.97451 0.96446 1.20465 0.96409 1.02765 0.95520 1.23047 0.94501 0.99180 0.96348 1.20470 1.01598 0.98082 0.95056 1.19215 0.85219 0.77686 0.84319 1.90818 1.15790 1.54781 1.70732 0.92155 0.93097 0.91919 0.89815 0.91862 0.94949 0.93813 0.92653 0.88915 0.89000 0.87746 0.87631 0.89546 0.89856 0.89928 0.89466 0.89849 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 37.16 0.38 -1.97 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.71 16 3 N -0.59 -12.77 2.46 -175.06 -0.43 -13.20 16 4 C 0.25 6.52 5.16 -5.19 -0.03 6.50 16 5 C -0.53 -15.18 9.39 -34.44 -0.32 -15.50 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 9 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.51 10.79 7.67 -10.99 -0.08 10.71 16 14 O -0.54 -13.60 15.56 5.56 0.09 -13.52 16 15 C -0.16 -2.47 4.58 -27.89 -0.13 -2.60 16 16 C 0.13 1.95 5.11 -4.04 -0.02 1.93 16 17 N -0.59 -7.54 2.64 -117.53 -0.31 -7.85 16 18 C 0.55 6.56 8.03 -12.39 -0.10 6.46 16 19 O -0.45 -6.60 17.74 5.46 0.10 -6.50 16 20 C -0.13 -1.05 6.38 -102.02 -0.65 -1.70 16 21 C -0.10 -0.46 10.07 36.01 0.36 -0.09 16 22 C -0.13 -1.05 6.38 -102.02 -0.65 -1.70 16 23 C -0.10 -0.47 10.07 36.01 0.36 -0.11 16 24 C 0.55 6.69 8.03 -12.39 -0.10 6.59 16 25 O -0.45 -6.82 17.74 5.46 0.10 -6.72 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.69 7.22 -51.93 -0.38 0.31 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.42 8.07 -51.93 -0.42 1.01 16 30 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 31 H 0.03 0.86 8.07 -51.92 -0.42 0.45 16 32 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.09 1.36 7.40 -51.93 -0.38 0.97 16 35 H 0.09 1.29 7.19 -51.93 -0.37 0.92 16 36 H 0.10 1.62 7.97 -51.93 -0.41 1.21 16 37 H 0.11 1.70 7.97 -51.93 -0.41 1.28 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.22 7.88 -51.93 -0.41 -0.19 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.23 7.88 -51.93 -0.41 -0.18 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -35.54 371.25 -6.67 -42.21 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -6.42 Total: -2.94 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -1.10 Total: 11.91 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.00 Total: -47.20 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: 0.28 Total: -26.74 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.54 -6.67 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900325604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.607 kcal (2) G-P(sol) polarization free energy of solvation -35.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds