Wall clock time and date at job start Tue Mar 31 2020 09:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47054 * 2 1 4 4 O 1.42898 * 109.46889 * 120.00069 * 2 1 3 5 5 C 1.52997 * 109.47185 * 239.99800 * 2 1 3 6 6 N 1.46900 * 109.47371 * 180.02562 * 5 2 1 7 7 C 1.46898 * 111.00084 * 188.95667 * 6 5 2 8 8 N 1.36600 * 110.99812 * 64.99876 * 6 5 2 9 9 C 1.34774 * 120.00128 * 240.00318 * 8 6 5 10 10 O 1.21282 * 120.00304 * 0.02562 * 9 8 6 11 11 C 1.50704 * 120.00135 * 180.02562 * 9 8 6 12 12 C 1.50699 * 109.47208 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97915 * 12 11 9 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99715 * 12 11 9 27 27 H 1.09001 * 109.47447 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47223 * 300.00383 * 1 2 3 29 29 H 1.09002 * 109.46848 * 59.99877 * 1 2 3 30 30 H 0.96701 * 114.00136 * 59.99506 * 4 2 1 31 31 H 1.09006 * 109.46938 * 59.99881 * 5 2 1 32 32 H 1.09001 * 109.47223 * 300.00498 * 5 2 1 33 33 H 1.08998 * 109.46734 * 296.04412 * 7 6 5 34 34 H 1.08994 * 109.47289 * 56.04631 * 7 6 5 35 35 H 1.09005 * 109.46683 * 176.04937 * 7 6 5 36 36 H 0.97001 * 119.99412 * 60.00353 * 8 6 5 37 37 H 1.09002 * 109.46571 * 59.99894 * 11 9 8 38 38 H 1.08992 * 109.46782 * 300.00158 * 11 9 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 42 42 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5090 -0.7218 -1.2489 7 6 4.0355 -1.2143 -2.5288 8 7 3.9981 -1.4536 -0.2042 9 6 4.7844 -0.8669 0.7198 10 8 5.0575 0.3109 0.6242 11 6 5.3244 -1.6743 1.8721 12 6 6.1671 -0.7896 2.7541 13 6 7.5227 -0.6612 2.5106 14 6 8.2994 0.1492 3.3180 15 6 7.7222 0.8383 4.3667 16 6 6.3628 0.7071 4.6173 17 8 5.7938 1.3784 5.6509 18 6 6.6219 2.0593 6.4685 19 1 7.6756 2.1213 6.2401 20 6 6.1206 2.6801 7.6024 21 7 4.8371 2.6043 7.8809 22 14 7.2680 3.6230 8.7355 23 1 7.3437 5.0395 8.2961 24 1 6.7502 3.5630 10.1260 25 1 8.6224 3.0160 8.6851 26 6 5.5854 -0.1083 3.8048 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.7209 -1.5952 1.2329 31 1 1.6767 -0.2074 -2.1392 32 1 1.6766 -1.7489 -1.2492 33 1 3.7441 -2.2558 -2.6649 34 1 3.6303 -0.6142 -3.3435 35 1 5.1230 -1.1385 -2.5276 36 1 3.7793 -2.3955 -0.1276 37 1 5.9342 -2.4922 1.4882 38 1 4.4951 -2.0803 2.4513 39 1 7.9754 -1.1951 1.6880 40 1 9.3576 0.2471 3.1256 41 1 8.3285 1.4751 4.9938 42 1 4.4865 3.0383 8.6744 43 1 4.5271 -0.2095 3.9949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910155621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:45 Heat of formation + Delta-G solvation = -47.676883 kcal Electronic energy + Delta-G solvation = -25506.447409 eV Core-core repulsion = 21747.115921 eV Total energy + Delta-G solvation = -3759.331488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.06060 -38.90235 -37.87107 -36.55154 -35.97775 -32.55855 -32.18845 -31.70757 -30.77759 -29.03283 -27.47081 -26.96289 -25.15258 -23.78153 -21.89558 -21.49323 -21.00730 -20.10278 -17.83529 -17.36006 -16.83276 -16.75271 -16.36063 -15.90688 -15.37672 -14.99459 -14.65244 -14.32238 -14.29145 -13.88751 -13.65788 -13.52993 -13.28393 -13.14226 -12.86566 -12.59876 -12.47069 -12.27558 -12.18624 -11.98881 -11.69310 -11.37681 -11.15844 -11.00400 -10.69949 -10.65664 -10.47400 -10.35147 -10.21895 -9.45536 -9.19889 -9.07623 -8.90379 -8.71835 -7.90169 -7.06769 -6.32205 -3.90796 2.20774 2.53790 2.82932 3.14594 3.21218 3.21453 3.26243 3.95679 4.07146 4.39766 4.63113 4.68429 4.82330 4.97986 5.02680 5.07402 5.11609 5.15594 5.19571 5.23659 5.30110 5.44822 5.46940 5.55803 5.66031 5.79974 5.83831 5.90945 5.99168 6.08337 6.32654 6.49615 6.50933 6.80927 7.07921 7.20907 7.41773 7.43237 7.50852 7.57467 7.59063 7.61706 7.98555 8.13314 8.83003 9.13642 9.86623 10.86305 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017893 B = 0.003309 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.496926 B = 8459.176002 C = 9629.558444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.108 3.892 3 H 0.108 0.892 4 O -0.542 6.542 5 C 0.006 3.994 6 N -0.292 5.292 7 C 0.007 3.993 8 N -0.583 5.583 9 C 0.544 3.456 10 O -0.496 6.496 11 C -0.086 4.086 12 C -0.031 4.031 13 C -0.196 4.196 14 C -0.077 4.077 15 C -0.231 4.231 16 C 0.154 3.846 17 O -0.181 6.181 18 C -0.389 4.389 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.168 4.168 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.361 0.639 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.372 0.628 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.268 0.732 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 -12.238 -18.569 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.049 3.951 3 H 0.126 0.874 4 O -0.345 6.345 5 C -0.123 4.123 6 N -0.108 5.108 7 C -0.141 4.141 8 N -0.331 5.331 9 C 0.331 3.669 10 O -0.365 6.365 11 C -0.128 4.128 12 C -0.032 4.032 13 C -0.215 4.215 14 C -0.095 4.095 15 C -0.251 4.251 16 C 0.101 3.899 17 O -0.085 6.085 18 C -0.466 4.466 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.501 5.501 22 Si 0.764 3.236 23 H -0.200 1.200 24 H -0.204 1.204 25 H -0.193 1.193 26 C -0.188 4.188 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.206 0.794 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.210 0.790 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.078 0.922 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.283 -10.163 -18.183 21.490 hybrid contribution -0.235 -1.315 0.023 1.336 sum -5.518 -11.477 -18.161 22.181 Atomic orbital electron populations 1.22484 0.96277 1.02216 1.03149 1.21881 0.91943 0.97786 0.83517 0.87439 1.86821 1.76540 1.27844 1.43311 1.23408 0.87965 0.99917 1.00993 1.62736 1.06256 1.44945 0.96883 1.22909 1.02112 0.98256 0.90850 1.45377 1.53643 1.10074 1.24033 1.20406 0.76941 0.88254 0.81333 1.90720 1.56145 1.15790 1.73876 1.20511 1.00169 0.97744 0.94350 1.18629 0.93106 0.97122 0.94296 1.20343 0.93459 1.05511 1.02221 1.20654 0.98306 0.95880 0.94652 1.21157 0.95459 1.06325 1.02131 1.19288 0.91230 0.90412 0.88972 1.83982 1.35122 1.55875 1.33479 1.21311 0.91544 1.30273 1.03437 0.89196 1.25256 0.96702 0.97720 0.96901 1.70046 1.12036 1.41727 1.26270 0.85738 0.79350 0.79525 0.78942 1.19969 1.20365 1.19260 1.19973 0.99293 1.01479 0.98040 0.92651 0.91177 0.91679 0.79384 0.88931 0.94083 0.95178 0.90206 0.90519 0.79002 0.88916 0.88256 0.88055 0.87603 0.85733 0.92208 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.53 37.16 0.35 -1.08 16 2 C 0.11 1.13 3.85 -26.73 -0.10 1.03 16 3 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 4 O -0.54 -6.59 10.51 -35.23 -0.37 -6.96 16 5 C 0.01 0.05 5.00 -3.83 -0.02 0.03 16 6 N -0.29 -3.19 4.57 -121.13 -0.55 -3.75 16 7 C 0.01 0.06 9.98 60.06 0.60 0.66 16 8 N -0.58 -6.36 3.33 31.22 0.10 -6.25 16 9 C 0.54 8.39 6.68 -10.98 -0.07 8.32 16 10 O -0.50 -10.51 16.36 5.56 0.09 -10.42 16 11 C -0.09 -1.20 5.83 -29.03 -0.17 -1.37 16 12 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 13 C -0.20 -3.72 9.70 -39.53 -0.38 -4.10 16 14 C -0.08 -1.54 10.04 -39.61 -0.40 -1.94 16 15 C -0.23 -5.45 9.17 -39.40 -0.36 -5.81 16 16 C 0.15 4.02 6.65 -39.11 -0.26 3.76 16 17 O -0.18 -5.47 9.76 0.05 0.00 -5.47 16 18 C -0.39 -11.43 9.49 30.89 0.29 -11.13 16 19 H 0.09 2.45 5.21 -52.49 -0.27 2.18 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.87 -26.35 13.67 55.48 0.76 -25.59 16 22 Si 0.94 21.37 29.55 -169.99 -5.02 16.35 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 26 C -0.17 -3.88 9.65 -39.39 -0.38 -4.26 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.36 2.85 9.05 45.56 0.41 3.27 16 31 H 0.09 0.64 8.04 -51.93 -0.42 0.22 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.37 2.75 8.83 -185.15 -1.63 1.12 16 37 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 39 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.12 2.91 5.64 -52.49 -0.30 2.61 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -37.87 364.95 -7.78 -45.65 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.83 Total: 6.93 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.45 Total: -15.98 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.31 Total: -35.60 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.28 Total: -22.85 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.87 -7.78 -45.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910155621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.029 kcal (2) G-P(sol) polarization free energy of solvation -37.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds