Wall clock time and date at job start Tue Mar 31 2020 09:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47054 * 2 1 4 4 O 1.42898 * 109.46889 * 120.00069 * 2 1 3 5 5 C 1.52997 * 109.47185 * 239.99800 * 2 1 3 6 6 N 1.46900 * 109.47371 * 180.02562 * 5 2 1 7 7 C 1.46898 * 111.00084 * 188.95667 * 6 5 2 8 8 N 1.36600 * 110.99812 * 64.99876 * 6 5 2 9 9 C 1.34774 * 120.00128 * 240.00318 * 8 6 5 10 10 O 1.21282 * 120.00304 * 0.02562 * 9 8 6 11 11 C 1.50704 * 120.00135 * 180.02562 * 9 8 6 12 12 C 1.50699 * 109.47208 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97915 * 12 11 9 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99715 * 12 11 9 27 27 H 1.09001 * 109.47447 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47223 * 300.00383 * 1 2 3 29 29 H 1.09002 * 109.46848 * 59.99877 * 1 2 3 30 30 H 0.96701 * 114.00136 * 59.99506 * 4 2 1 31 31 H 1.09006 * 109.46938 * 59.99881 * 5 2 1 32 32 H 1.09001 * 109.47223 * 300.00498 * 5 2 1 33 33 H 1.08998 * 109.46734 * 296.04412 * 7 6 5 34 34 H 1.08994 * 109.47289 * 56.04631 * 7 6 5 35 35 H 1.09005 * 109.46683 * 176.04937 * 7 6 5 36 36 H 0.97001 * 119.99412 * 60.00353 * 8 6 5 37 37 H 1.09002 * 109.46571 * 59.99894 * 11 9 8 38 38 H 1.08992 * 109.46782 * 300.00158 * 11 9 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 42 42 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 3.5090 -0.7218 -1.2489 7 6 4.0355 -1.2143 -2.5288 8 7 3.9981 -1.4536 -0.2042 9 6 4.7844 -0.8669 0.7198 10 8 5.0575 0.3109 0.6242 11 6 5.3244 -1.6743 1.8721 12 6 6.1671 -0.7896 2.7541 13 6 7.5227 -0.6612 2.5106 14 6 8.2994 0.1492 3.3180 15 6 7.7222 0.8383 4.3667 16 6 6.3628 0.7071 4.6173 17 8 5.7938 1.3784 5.6509 18 6 6.6219 2.0593 6.4685 19 1 7.6756 2.1213 6.2401 20 6 6.1206 2.6801 7.6024 21 7 4.8371 2.6043 7.8809 22 14 7.2680 3.6230 8.7355 23 1 7.3437 5.0395 8.2961 24 1 6.7502 3.5630 10.1260 25 1 8.6224 3.0160 8.6851 26 6 5.5854 -0.1083 3.8048 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.7209 -1.5952 1.2329 31 1 1.6767 -0.2074 -2.1392 32 1 1.6766 -1.7489 -1.2492 33 1 3.7441 -2.2558 -2.6649 34 1 3.6303 -0.6142 -3.3435 35 1 5.1230 -1.1385 -2.5276 36 1 3.7793 -2.3955 -0.1276 37 1 5.9342 -2.4922 1.4882 38 1 4.4951 -2.0803 2.4513 39 1 7.9754 -1.1951 1.6880 40 1 9.3576 0.2471 3.1256 41 1 8.3285 1.4751 4.9938 42 1 4.4865 3.0383 8.6744 43 1 4.5271 -0.2095 3.9949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910155621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:44 Heat of formation + Delta-G solvation = -77.588064 kcal Electronic energy + Delta-G solvation = -25507.744455 eV Core-core repulsion = 21747.115921 eV Total energy + Delta-G solvation = -3760.628535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17697 -40.56327 -39.06647 -38.06349 -37.13731 -34.32108 -33.69258 -32.92353 -31.69951 -30.80024 -28.45449 -28.03830 -27.22527 -24.70232 -23.23227 -22.80614 -22.40855 -21.39685 -19.50087 -18.85926 -18.34526 -17.87695 -17.22220 -16.86621 -16.67543 -16.31823 -16.23772 -16.06135 -15.50397 -15.29923 -15.11829 -14.81310 -14.60440 -14.29364 -14.15074 -13.88413 -13.56799 -13.53679 -13.14552 -12.99151 -12.92420 -12.69221 -12.66044 -12.43090 -12.34466 -12.18290 -12.07936 -11.79346 -11.17060 -11.04282 -10.81392 -10.72011 -10.01716 -9.66146 -9.56317 -8.93874 -8.44853 -6.13513 0.56180 0.79969 1.34320 1.44635 1.52785 1.87759 2.01949 2.19441 2.86300 3.18290 3.27491 3.48794 3.68973 3.87769 3.93996 4.09245 4.15430 4.23658 4.31938 4.35859 4.41981 4.51449 4.56828 4.57837 4.61987 4.64776 4.70208 4.78486 4.84420 4.96755 5.11619 5.15509 5.16712 5.23163 5.35372 5.69346 5.76784 5.80135 5.85243 6.05501 6.27741 6.45875 6.70415 6.93524 6.99371 7.82396 7.82726 8.79001 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017893 B = 0.003309 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.496926 B = 8459.176002 C = 9629.558444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 H 0.062 0.938 4 O -0.572 6.572 5 C 0.015 3.985 6 N -0.332 5.332 7 C 0.011 3.989 8 N -0.560 5.560 9 C 0.546 3.454 10 O -0.566 6.566 11 C -0.084 4.084 12 C -0.023 4.023 13 C -0.180 4.180 14 C -0.075 4.075 15 C -0.248 4.248 16 C 0.111 3.889 17 O -0.236 6.236 18 C -0.415 4.415 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.923 5.923 22 Si 1.021 2.979 23 H -0.265 1.265 24 H -0.268 1.268 25 H -0.252 1.252 26 C -0.189 4.189 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.378 0.622 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.395 0.605 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.117 0.883 42 H 0.272 0.728 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 -14.920 -21.204 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.045 3.955 3 H 0.080 0.920 4 O -0.378 6.378 5 C -0.113 4.113 6 N -0.149 5.149 7 C -0.137 4.137 8 N -0.307 5.307 9 C 0.334 3.666 10 O -0.442 6.442 11 C -0.125 4.125 12 C -0.023 4.023 13 C -0.199 4.199 14 C -0.093 4.093 15 C -0.267 4.267 16 C 0.061 3.939 17 O -0.143 6.143 18 C -0.491 4.491 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.840 3.160 23 H -0.190 1.190 24 H -0.193 1.193 25 H -0.175 1.175 26 C -0.208 4.208 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.226 0.774 31 H 0.127 0.873 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.236 0.764 37 H 0.160 0.840 38 H 0.138 0.862 39 H 0.166 0.834 40 H 0.163 0.837 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.202 -12.947 -20.894 24.937 hybrid contribution -0.584 -0.689 0.528 1.046 sum -4.786 -13.636 -20.367 24.973 Atomic orbital electron populations 1.22373 0.94232 1.03618 1.02885 1.21843 0.93498 0.95879 0.84323 0.91984 1.86776 1.77207 1.29437 1.44410 1.23338 0.86341 1.01468 1.00109 1.62643 1.07959 1.46609 0.97672 1.22887 1.01143 1.00016 0.89628 1.44915 1.51828 1.10870 1.23114 1.20558 0.76840 0.87325 0.81873 1.90708 1.59146 1.18614 1.75711 1.20618 1.00961 0.97529 0.93376 1.19182 0.94247 0.95917 0.92987 1.20980 0.93137 1.03731 1.02023 1.21125 1.00449 0.94627 0.93083 1.21279 0.94478 1.07312 1.03625 1.19887 0.93063 0.91816 0.89154 1.83940 1.36677 1.58220 1.35505 1.21840 0.92200 1.30886 1.04166 0.88281 1.26632 0.98688 0.98541 0.98347 1.70200 1.14529 1.43920 1.27495 0.84567 0.77296 0.77853 0.76312 1.18976 1.19285 1.17521 1.20207 0.98799 1.02385 0.99422 0.90307 0.93227 0.90197 0.77354 0.87268 0.90950 0.92580 0.88918 0.92029 0.76361 0.84004 0.86231 0.83438 0.83682 0.86521 0.91889 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.53 71.98 0.69 -1.82 16 2 C 0.10 2.13 3.85 30.59 0.12 2.25 16 3 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 4 O -0.57 -13.74 10.51 -148.98 -1.57 -15.30 16 5 C 0.02 0.21 5.00 86.30 0.43 0.64 16 6 N -0.33 -6.50 4.57 -537.15 -2.46 -8.96 16 7 C 0.01 0.14 9.98 127.69 1.27 1.42 16 8 N -0.56 -10.64 3.33 -173.53 -0.58 -11.22 16 9 C 0.55 15.88 6.68 87.66 0.59 16.46 16 10 O -0.57 -24.14 16.36 -3.04 -0.05 -24.19 16 11 C -0.08 -2.08 5.83 29.10 0.17 -1.91 16 12 C -0.02 -0.84 4.37 -19.88 -0.09 -0.93 16 13 C -0.18 -6.25 9.70 22.30 0.22 -6.03 16 14 C -0.07 -2.87 10.04 22.25 0.22 -2.65 16 15 C -0.25 -11.97 9.17 22.39 0.21 -11.77 16 16 C 0.11 6.11 6.65 22.58 0.15 6.26 16 17 O -0.24 -15.46 9.76 -22.74 -0.22 -15.68 16 18 C -0.41 -25.87 9.49 67.92 0.64 -25.23 16 19 H 0.10 5.70 5.21 -2.91 -0.02 5.69 16 20 C -0.03 -1.52 5.49 84.83 0.47 -1.05 16 21 N -0.92 -59.56 13.67 21.61 0.30 -59.26 16 22 Si 1.02 45.22 29.55 68.60 2.03 47.25 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 26 C -0.19 -9.07 9.65 22.39 0.22 -8.85 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.38 5.33 9.05 -74.06 -0.67 4.66 16 31 H 0.11 1.17 8.04 -2.38 -0.02 1.15 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.09 0.97 8.06 -2.39 -0.02 0.95 16 35 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.40 4.14 8.83 -215.50 -1.90 2.24 16 37 H 0.14 2.16 8.09 -2.39 -0.02 2.14 16 38 H 0.12 2.53 8.08 -2.39 -0.02 2.51 16 39 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 40 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.12 5.68 5.64 -2.91 -0.02 5.66 16 42 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 43 H 0.10 5.01 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -92.80 364.95 1.21 -91.58 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -1.54 Total: 28.98 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 5.30 Total: -33.21 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -2.74 Total: -79.44 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -1.84 Total: -55.17 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -92.80 1.21 -91.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910155621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.996 kcal (2) G-P(sol) polarization free energy of solvation -92.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds