Wall clock time and date at job start Tue Mar 31 2020 09:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46884 * 2 1 4 4 O 1.42906 * 109.46933 * 240.00082 * 2 1 3 5 5 C 1.53001 * 109.47108 * 120.00362 * 2 1 3 6 6 N 1.46898 * 109.46696 * 184.99946 * 5 2 1 7 7 C 1.46900 * 111.00135 * 188.95011 * 6 5 2 8 8 N 1.36604 * 111.00320 * 65.00075 * 6 5 2 9 9 C 1.34779 * 119.99987 * 240.00008 * 8 6 5 10 10 O 1.21281 * 120.00083 * 359.97438 * 9 8 6 11 11 C 1.50699 * 119.99634 * 179.97438 * 9 8 6 12 12 C 1.50706 * 109.46848 * 179.97438 * 11 9 8 13 13 C 1.38301 * 119.93163 * 269.73265 * 12 11 9 14 14 C 1.38105 * 120.06636 * 179.72671 * 13 12 11 15 15 C 1.38880 * 119.92816 * 0.56588 * 14 13 12 16 16 O 1.35754 * 120.06749 * 179.68576 * 15 14 13 17 17 C 1.34831 * 116.99885 * 174.48413 * 16 15 14 18 18 H 1.07994 * 120.00447 * 5.05517 * 17 16 15 19 19 C 1.38656 * 119.99460 * 185.05509 * 17 16 15 20 20 N 1.31554 * 120.00575 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99411 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47515 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46739 * 120.00153 * 21 19 17 24 24 H 1.48503 * 109.47180 * 239.99861 * 21 19 17 25 25 C 1.38877 * 119.86591 * 359.70183 * 15 14 13 26 26 C 1.38108 * 119.92849 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.46884 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46661 * 299.99394 * 1 2 3 29 29 H 1.08998 * 109.47334 * 59.99839 * 1 2 3 30 30 H 0.96699 * 113.99442 * 60.00058 * 4 2 1 31 31 H 1.08996 * 109.46938 * 304.99742 * 5 2 1 32 32 H 1.08995 * 109.47156 * 65.00129 * 5 2 1 33 33 H 1.09009 * 109.46583 * 59.99785 * 7 6 5 34 34 H 1.09001 * 109.47748 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.47092 * 300.00547 * 7 6 5 36 36 H 0.96999 * 120.00167 * 59.99514 * 8 6 5 37 37 H 1.08999 * 109.47266 * 299.99728 * 11 9 8 38 38 H 1.09005 * 109.47215 * 60.00497 * 11 9 8 39 39 H 1.07992 * 119.96610 * 359.97110 * 13 12 11 40 40 H 1.07991 * 120.03611 * 180.26858 * 14 13 12 41 41 H 0.96997 * 119.99953 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.03856 * 179.97438 * 25 15 14 43 43 H 1.07997 * 119.96140 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5040 -0.6176 1.3110 7 6 4.0480 -1.4727 2.3745 8 7 3.8964 0.6802 1.4777 9 6 4.6825 1.2703 0.5556 10 8 5.0420 0.6490 -0.4219 11 6 5.1148 2.7022 0.7394 12 6 5.9811 3.1183 -0.4215 13 6 7.3515 2.9439 -0.3572 14 6 8.1475 3.3190 -1.4217 15 6 7.5715 3.8826 -2.5527 16 8 8.3518 4.2582 -3.5981 17 6 7.7210 4.6917 -4.7081 18 1 6.6471 4.8057 -4.7093 19 6 8.4512 4.9910 -5.8482 20 7 9.7594 4.8517 -5.8470 21 14 7.5772 5.5909 -7.3863 22 1 6.1162 5.6610 -7.1300 23 1 8.0812 6.9403 -7.7475 24 1 7.8396 4.6489 -8.5040 25 6 6.1955 4.0615 -2.6120 26 6 5.4044 3.6792 -1.5465 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.7210 -0.2700 -1.9979 31 1 1.6055 -0.2618 2.1369 32 1 1.7517 -1.7716 1.2055 33 1 3.7790 -2.5108 2.1792 34 1 5.1335 -1.3765 2.3986 35 1 3.6349 -1.1649 3.3351 36 1 3.6091 1.1771 2.2597 37 1 4.2352 3.3443 0.7852 38 1 5.6810 2.7948 1.6662 39 1 7.7993 2.5104 0.5247 40 1 9.2171 3.1786 -1.3726 41 1 10.2701 5.0607 -6.6447 42 1 5.7447 4.4999 -3.4900 43 1 4.3344 3.8184 -1.5919 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910168800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:57 Heat of formation + Delta-G solvation = -50.156199 kcal Electronic energy + Delta-G solvation = -25118.667138 eV Core-core repulsion = 21359.228139 eV Total energy + Delta-G solvation = -3759.439000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.07267 -38.93805 -37.88131 -36.69034 -36.08388 -32.54640 -32.23862 -31.49515 -30.66004 -30.07283 -27.49440 -26.68468 -25.15139 -23.73105 -21.90085 -21.59588 -20.91744 -20.06261 -17.91325 -17.63039 -17.42422 -16.84031 -16.66195 -16.07358 -14.90633 -14.75259 -14.54860 -14.38268 -14.25218 -13.91252 -13.67588 -13.50145 -13.46017 -13.22856 -12.82434 -12.65591 -12.60269 -12.55485 -12.40035 -12.08918 -11.78757 -11.44324 -11.21467 -10.97035 -10.79256 -10.69547 -10.53905 -10.36907 -10.07086 -9.52373 -9.25551 -9.22081 -8.91831 -8.76104 -8.07239 -7.09084 -6.38638 -3.96976 2.26832 2.32933 2.78269 2.96376 3.16735 3.18584 3.23804 3.99055 4.02337 4.12586 4.60681 4.63311 4.88174 4.91323 4.98746 5.01911 5.12688 5.14698 5.18085 5.22853 5.31958 5.38937 5.41270 5.54486 5.59596 5.59993 5.70508 5.79131 5.80709 5.92201 6.28988 6.48809 6.50608 6.77554 6.98764 7.12591 7.31112 7.33432 7.44088 7.49927 7.53121 7.65637 7.91549 8.06965 8.71529 9.07323 9.78544 10.79743 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.002963 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.913954 B = 9448.843815 C =10384.440839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.109 3.891 3 H 0.053 0.947 4 O -0.545 6.545 5 C 0.045 3.955 6 N -0.288 5.288 7 C 0.008 3.992 8 N -0.595 5.595 9 C 0.519 3.481 10 O -0.482 6.482 11 C -0.075 4.075 12 C -0.169 4.169 13 C -0.059 4.059 14 C -0.191 4.191 15 C 0.157 3.843 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.276 1.276 25 C -0.232 4.232 26 C -0.055 4.055 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.374 0.626 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.029 0.971 36 H 0.373 0.627 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.625 -7.175 17.462 25.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.049 3.951 3 H 0.071 0.929 4 O -0.350 6.350 5 C -0.083 4.083 6 N -0.104 5.104 7 C -0.141 4.141 8 N -0.344 5.344 9 C 0.305 3.695 10 O -0.350 6.350 11 C -0.116 4.116 12 C -0.170 4.170 13 C -0.077 4.077 14 C -0.210 4.210 15 C 0.104 3.896 16 O -0.083 6.083 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.251 4.251 26 C -0.074 4.074 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.220 0.780 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.211 0.789 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.419 -8.134 16.511 24.665 hybrid contribution -1.415 0.999 0.116 1.736 sum -17.834 -7.135 16.627 25.404 Atomic orbital electron populations 1.22530 0.96563 1.02798 1.02564 1.21609 0.91555 0.95487 0.86451 0.92930 1.86653 1.76974 1.56223 1.15125 1.22644 0.87398 1.02376 0.95931 1.62848 1.09221 0.94418 1.43893 1.22901 1.01639 0.97770 0.91742 1.45696 1.54700 1.08126 1.25907 1.20996 0.77521 0.88713 0.82240 1.90767 1.51680 1.64691 1.27898 1.20381 1.00233 0.91767 0.99230 1.18594 0.93191 1.09086 0.96140 1.20396 0.92646 0.97608 0.97050 1.20154 0.99719 1.07485 0.93676 1.19376 0.89925 0.91360 0.88974 1.83979 1.33486 1.70755 1.20042 1.21375 0.92918 1.44375 0.87935 0.89044 1.25283 0.95681 0.97178 0.98437 1.70049 1.05290 1.45231 1.29330 0.85653 0.79079 0.78412 0.80306 1.19120 1.20220 1.20151 1.21096 0.93748 1.09691 1.00609 1.20480 0.97840 0.96536 0.92509 0.91744 0.91873 0.91920 0.77958 0.93018 0.88898 0.89999 0.90498 0.95224 0.78932 0.89215 0.89056 0.87389 0.86558 0.92141 0.85627 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.30 9.53 37.16 0.35 -0.95 16 2 C 0.11 1.08 3.63 -26.73 -0.10 0.98 16 3 H 0.05 0.57 7.47 -51.93 -0.39 0.19 16 4 O -0.55 -7.02 13.27 -35.23 -0.47 -7.49 16 5 C 0.04 0.40 4.85 -3.82 -0.02 0.38 16 6 N -0.29 -3.28 4.52 -121.13 -0.55 -3.83 16 7 C 0.01 0.07 9.96 60.06 0.60 0.67 16 8 N -0.59 -6.35 4.02 31.22 0.13 -6.23 16 9 C 0.52 7.50 7.80 -10.98 -0.09 7.42 16 10 O -0.48 -9.74 16.36 5.56 0.09 -9.65 16 11 C -0.07 -0.94 5.83 -29.03 -0.17 -1.10 16 12 C -0.17 -2.98 4.38 -104.57 -0.46 -3.43 16 13 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 14 C -0.19 -4.26 9.99 -39.39 -0.39 -4.66 16 15 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 16 O -0.18 -5.29 9.76 0.03 0.00 -5.29 16 17 C -0.39 -11.21 9.49 30.89 0.29 -10.92 16 18 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 21 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 25 C -0.23 -5.28 9.17 -39.39 -0.36 -5.64 16 26 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.37 3.64 9.08 45.56 0.41 4.05 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.08 0.64 8.13 -51.92 -0.42 0.22 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.37 2.65 8.83 -185.15 -1.63 1.01 16 37 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 43 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -37.30 368.56 -7.77 -45.07 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.80 Total: 6.53 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -1.46 Total: -15.50 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.34 Total: -35.23 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.38 Total: -22.43 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.30 -7.77 -45.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910168800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.089 kcal (2) G-P(sol) polarization free energy of solvation -37.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds