Wall clock time and date at job start Tue Mar 31 2020 10:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46786 * 2 1 4 4 C 1.46507 * 120.00043 * 269.99836 * 3 2 1 5 5 C 1.50702 * 109.47090 * 270.00457 * 4 3 2 6 6 H 1.08000 * 120.00071 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99708 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99713 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 119.99995 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47175 * 90.00489 * 9 7 5 11 11 H 1.48503 * 109.46948 * 210.00032 * 9 7 5 12 12 H 1.48497 * 109.47470 * 330.00402 * 9 7 5 13 13 C 1.34768 * 119.99729 * 90.00366 * 3 2 1 14 14 O 1.21287 * 120.00229 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00434 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.47146 * 180.02562 * 15 13 3 17 17 C 1.34893 * 116.99568 * 179.97438 * 16 15 13 18 18 O 1.21621 * 120.00370 * 0.02562 * 17 16 15 19 19 C 1.46496 * 119.99745 * 179.97438 * 17 16 15 20 20 C 1.37996 * 126.26154 * 179.97438 * 19 17 16 21 21 C 1.39795 * 106.96979 * 180.02562 * 20 19 17 22 22 C 1.35492 * 107.83926 * 359.97438 * 21 20 19 23 23 C 1.50703 * 125.50507 * 179.97438 * 22 21 20 24 24 N 1.34958 * 108.98700 * 0.24383 * 22 21 20 25 25 C 1.46501 * 125.63480 * 179.73571 * 24 22 21 26 26 H 1.09003 * 109.46581 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47234 * 300.00183 * 1 2 3 28 28 H 1.09003 * 109.47013 * 59.99751 * 1 2 3 29 29 H 1.09000 * 109.47166 * 240.00500 * 2 1 3 30 30 H 1.08990 * 109.47314 * 120.00246 * 2 1 3 31 31 H 1.08996 * 109.46794 * 30.00231 * 4 3 2 32 32 H 1.08997 * 109.46863 * 150.00470 * 4 3 2 33 33 H 0.97001 * 120.00003 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46706 * 60.00204 * 15 13 3 35 35 H 1.08992 * 109.46582 * 300.00257 * 15 13 3 36 36 H 1.07999 * 126.51444 * 359.97438 * 20 19 17 37 37 H 1.07998 * 126.08303 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.47152 * 90.02616 * 23 22 21 39 39 H 1.09001 * 109.46980 * 330.02716 * 23 22 21 40 40 H 1.09004 * 109.47113 * 210.02697 * 23 22 21 41 41 H 1.08995 * 109.46626 * 90.00410 * 25 24 22 42 42 H 1.08996 * 109.47145 * 210.00246 * 25 24 22 43 43 H 1.09000 * 109.47476 * 330.00046 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8775 8 7 5.3913 2.1835 -3.2574 9 14 3.0130 3.4361 -3.9287 10 1 3.1156 4.8562 -3.5068 11 1 3.4066 3.3139 -5.3553 12 1 1.6134 2.9695 -3.7595 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9913 1.3063 2.4723 16 8 2.3054 2.1961 3.5759 17 6 2.1326 1.7102 4.8224 18 8 1.7307 0.5735 4.9818 19 6 2.4301 2.5516 5.9842 20 6 2.3003 2.1889 7.3093 21 6 2.6904 3.2919 8.0744 22 6 3.0433 4.2843 7.2220 23 6 3.5276 5.6533 7.6251 24 7 2.8856 3.8507 5.9538 25 6 3.1565 4.6321 4.7446 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5817 1.6878 -2.0284 32 1 2.0955 3.1411 -1.1384 33 1 5.7173 2.5740 -4.0833 34 1 2.6213 0.4187 2.5302 35 1 0.9433 1.0125 2.5298 36 1 1.9611 1.2345 7.6841 37 1 2.7081 3.3437 9.1530 38 1 4.6131 5.6404 7.7235 39 1 3.0795 5.9308 8.5793 40 1 3.2403 6.3790 6.8641 41 1 4.1928 4.4840 4.4410 42 1 2.4931 4.3047 3.9442 43 1 2.9852 5.6890 4.9490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919022247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:22 Heat of formation + Delta-G solvation = -67.803911 kcal Electronic energy + Delta-G solvation = -25493.252478 eV Core-core repulsion = 21733.048217 eV Total energy + Delta-G solvation = -3760.204262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69741 -40.15223 -38.98317 -36.40217 -35.46114 -33.04854 -32.80454 -32.05972 -30.50819 -29.47580 -27.58962 -26.60173 -26.51842 -23.10622 -23.02642 -22.01287 -20.46128 -19.64615 -18.68529 -18.01983 -17.08032 -16.85344 -16.65837 -16.32664 -15.62095 -15.52949 -14.99322 -14.63002 -14.17640 -13.78512 -13.58887 -13.57698 -13.35751 -13.27454 -12.97345 -12.86875 -12.68892 -12.47228 -12.29100 -12.13566 -12.03117 -11.97714 -11.85777 -11.50019 -11.06555 -10.94219 -10.77177 -10.62749 -10.56270 -10.22112 -9.61085 -9.18156 -8.92154 -8.64591 -8.31055 -7.88083 -6.14143 -4.13762 1.12604 2.34499 2.45587 2.66510 3.05068 3.12008 3.24719 3.30687 3.32351 3.74234 4.34149 4.47317 4.68723 4.72332 4.75224 4.87453 5.07214 5.13515 5.16910 5.19002 5.28515 5.29910 5.31946 5.38693 5.46468 5.54099 5.63024 5.73884 5.88953 5.90235 5.97350 6.07085 6.26797 6.32424 6.58720 6.61452 6.80495 6.84090 7.00843 7.18940 7.53257 7.69569 8.05383 8.39199 8.74678 8.89324 9.45200 10.99125 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018119 B = 0.003351 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.994237 B = 8352.791164 C = 9401.345324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.587 5.587 4 C 0.219 3.781 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.511 3.489 14 O -0.522 6.522 15 C 0.051 3.949 16 O -0.334 6.334 17 C 0.537 3.463 18 O -0.504 6.504 19 C -0.049 4.049 20 C -0.096 4.096 21 C -0.216 4.216 22 C 0.057 3.943 23 C -0.091 4.091 24 N -0.409 5.409 25 C 0.059 3.941 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 1.899 19.052 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.320 5.320 4 C 0.099 3.901 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.296 3.704 14 O -0.398 6.398 15 C -0.026 4.026 16 O -0.250 6.250 17 C 0.383 3.617 18 O -0.393 6.393 19 C -0.158 4.158 20 C -0.122 4.122 21 C -0.240 4.240 22 C -0.063 4.063 23 C -0.148 4.148 24 N -0.083 5.083 25 C -0.082 4.082 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.016 2.389 18.502 20.305 hybrid contribution -0.429 0.227 -0.815 0.948 sum -8.445 2.616 17.687 19.773 Atomic orbital electron populations 1.22244 0.96425 1.01959 1.02309 1.21558 0.93700 0.83492 1.03579 1.47871 1.64046 1.13585 1.06456 1.19702 0.97542 0.93388 0.79513 1.21314 0.95246 1.33168 1.07308 0.90687 1.24852 0.95008 0.95770 0.97309 1.69896 1.15133 1.44814 1.23550 0.86851 0.81427 0.81574 0.79832 1.19881 1.21003 1.19044 1.19703 0.79303 0.87080 0.84302 1.90687 1.44602 1.17656 1.86825 1.22938 1.02922 0.92739 0.84006 1.86644 1.79303 1.44690 1.14322 1.19845 0.74634 0.85175 0.82064 1.90883 1.43604 1.18395 1.86417 1.19320 1.17657 0.86127 0.92730 1.21286 1.01693 0.99749 0.89466 1.20637 1.10802 0.93362 0.99186 1.20547 1.04606 0.97867 0.83231 1.20449 1.01738 0.90202 1.02433 1.43973 1.47068 1.10509 1.06738 1.22423 1.04641 0.95748 0.85343 0.91609 0.93014 0.91986 0.89130 0.91301 0.94870 0.94439 0.92482 0.88328 0.88553 0.83163 0.83676 0.90409 0.89760 0.91313 0.89809 0.87230 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.67 2.46 -175.05 -0.43 -12.10 16 4 C 0.22 5.18 4.23 -5.19 -0.02 5.16 16 5 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 6 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 9 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 13 C 0.51 10.26 7.75 -10.99 -0.09 10.18 16 14 O -0.52 -12.45 16.08 -14.11 -0.23 -12.68 16 15 C 0.05 0.81 4.51 36.01 0.16 0.98 16 16 O -0.33 -5.53 7.19 -47.71 -0.34 -5.87 16 17 C 0.54 8.47 7.92 34.06 0.27 8.74 16 18 O -0.50 -8.54 16.68 -19.36 -0.32 -8.87 16 19 C -0.05 -0.69 6.89 -81.99 -0.56 -1.25 16 20 C -0.10 -1.17 10.66 -39.09 -0.42 -1.59 16 21 C -0.22 -2.23 10.71 -39.98 -0.43 -2.66 16 22 C 0.06 0.58 6.85 -82.20 -0.56 0.02 16 23 C -0.09 -0.60 10.07 36.01 0.36 -0.23 16 24 N -0.41 -5.06 3.15 -115.77 -0.36 -5.42 16 25 C 0.06 0.67 10.33 59.85 0.62 1.29 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 30 H 0.07 0.89 6.44 -51.93 -0.33 0.56 16 31 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 32 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 33 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.10 1.46 7.40 -51.93 -0.38 1.07 16 35 H 0.10 1.32 7.18 -51.93 -0.37 0.95 16 36 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.41 6.97 -51.93 -0.36 0.05 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.11 1.51 6.16 -51.93 -0.32 1.19 16 43 H 0.09 0.73 6.94 -51.93 -0.36 0.37 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -34.98 362.77 -7.07 -42.05 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.20 Total: 0.37 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -0.75 Total: 7.09 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.02 Total: -44.02 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.89 Total: -27.41 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.98 -7.07 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919022247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.757 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds