Wall clock time and date at job start Tue Mar 31 2020 09:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47053 * 2 1 4 4 C 1.50696 * 109.47591 * 239.98844 * 2 1 3 5 5 H 1.07996 * 120.00504 * 240.00614 * 4 2 1 6 6 C 1.37882 * 119.99387 * 60.00426 * 4 2 1 7 7 N 1.31508 * 120.00384 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99984 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46762 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47422 * 119.99970 * 8 6 4 11 11 H 1.48497 * 109.47146 * 240.00479 * 8 6 4 12 12 N 1.46506 * 109.46462 * 119.99198 * 2 1 3 13 13 C 1.46499 * 119.99906 * 60.00498 * 12 2 1 14 14 C 1.34771 * 119.99938 * 240.00049 * 12 2 1 15 15 O 1.21586 * 120.00391 * 0.02562 * 14 12 2 16 16 N 1.34779 * 120.00037 * 180.02562 * 14 12 2 17 17 C 1.46504 * 120.00148 * 185.19741 * 16 14 12 18 18 C 1.52994 * 109.47140 * 295.24973 * 17 16 14 19 19 C 1.52998 * 109.46897 * 55.25127 * 17 16 14 20 20 C 1.52996 * 117.49972 * 174.99836 * 19 17 16 21 21 C 1.52999 * 117.50040 * 243.62416 * 19 17 16 22 22 C 1.52999 * 109.46905 * 175.24970 * 17 16 14 23 23 F 1.39902 * 109.47414 * 294.50850 * 22 17 16 24 24 F 1.39905 * 109.47186 * 54.50970 * 22 17 16 25 25 F 1.39901 * 109.46719 * 174.51028 * 22 17 16 26 26 H 1.09001 * 109.46244 * 60.00643 * 1 2 3 27 27 H 1.08994 * 109.47053 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47312 * 300.00738 * 1 2 3 29 29 H 0.96999 * 120.00379 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.47330 * 269.99480 * 13 12 2 31 31 H 1.09002 * 109.47207 * 29.99471 * 13 12 2 32 32 H 1.09000 * 109.47346 * 149.99921 * 13 12 2 33 33 H 0.97001 * 119.99649 * 5.19531 * 16 14 12 34 34 H 1.08999 * 109.47117 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.47580 * 300.00206 * 18 17 16 36 36 H 1.09008 * 109.47140 * 59.99938 * 18 17 16 37 37 H 1.09000 * 115.56118 * 29.31207 * 19 17 16 38 38 H 1.09002 * 117.49547 * 359.97438 * 20 19 17 39 39 H 1.08996 * 117.50104 * 214.97809 * 20 19 17 40 40 H 1.08990 * 117.50194 * 145.02127 * 21 19 17 41 41 H 1.09008 * 117.51464 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7106 -1.2302 5 1 2.6533 -1.5887 -1.1310 6 6 1.6995 -0.2397 -2.4826 7 7 0.9430 0.8293 -2.6035 8 14 2.3216 -1.1208 -4.0077 9 1 3.1467 -2.2875 -3.6033 10 1 1.1664 -1.5872 -4.8159 11 1 3.1470 -0.1880 -4.8163 12 7 2.0183 -0.6905 1.1964 13 6 1.6643 -2.0930 1.4283 14 6 2.7930 -0.0354 2.0835 15 8 3.0865 1.1287 1.8912 16 7 3.2426 -0.6708 3.1838 17 6 3.9885 0.0701 4.2042 18 6 5.3086 0.5663 3.6110 19 6 3.1588 1.2665 4.6742 20 6 3.7160 2.1033 5.8274 21 6 3.7188 2.6645 4.4040 22 6 4.2770 -0.8490 5.3928 23 9 3.0732 -1.2025 6.0120 24 9 4.9265 -2.0035 4.9428 25 9 5.0950 -0.1814 6.3106 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 0.7090 1.1608 -3.4845 30 1 0.7374 -2.1442 1.9996 31 1 1.5294 -2.5968 0.4711 32 1 2.4627 -2.5817 1.9868 33 1 3.0722 -1.6186 3.3002 34 1 5.8633 1.1179 4.3700 35 1 5.8997 -0.2861 3.2761 36 1 5.1030 1.2211 2.7641 37 1 2.0775 1.1387 4.6217 38 1 4.6736 1.8012 6.2515 39 1 3.0015 2.5261 6.5336 40 1 3.0061 3.4563 4.1738 41 1 4.6786 2.7321 3.8917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933584732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:04 Heat of formation + Delta-G solvation = -138.669091 kcal Electronic energy + Delta-G solvation = -27778.287507 eV Core-core repulsion = 23473.153560 eV Total energy + Delta-G solvation = -4305.133947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.29191 -47.80277 -47.70767 -40.06945 -37.92976 -35.34829 -34.30421 -32.82771 -30.57743 -28.79850 -26.79039 -26.09377 -25.21090 -23.69330 -22.30463 -21.84327 -20.09850 -18.88691 -18.53347 -18.49049 -18.03988 -16.77354 -16.43001 -16.14926 -15.21069 -15.11935 -14.57095 -14.52525 -14.32801 -14.28356 -14.13774 -13.91312 -13.82313 -13.61195 -13.19661 -12.77540 -12.51163 -12.42488 -12.17344 -11.98379 -11.61893 -11.51984 -11.40569 -11.06617 -11.00964 -10.83765 -10.67172 -10.40576 -10.23974 -10.17393 -10.12893 -9.26524 -9.09846 -8.93523 -8.43105 -7.55358 -6.07436 -4.14946 2.43768 2.94806 3.25668 3.33979 3.36898 3.46176 3.72654 3.95088 4.01065 4.15917 4.36563 4.51289 4.68045 4.81542 4.99672 5.17827 5.24050 5.33776 5.53713 5.64758 5.69736 5.73892 5.99621 6.02533 6.14797 6.21972 6.30253 6.33918 6.58637 6.70193 6.81417 7.01766 7.14491 7.49067 7.69481 7.82648 8.07791 8.22429 8.68437 8.86673 9.26951 9.52612 10.97793 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.004157 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.447969 B = 6733.780768 C = 7045.228812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.274 3.726 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.606 5.606 13 C 0.086 3.914 14 C 0.707 3.293 15 O -0.578 6.578 16 N -0.749 5.749 17 C 0.196 3.804 18 C -0.172 4.172 19 C -0.158 4.158 20 C -0.193 4.193 21 C -0.138 4.138 22 C 0.453 3.547 23 F -0.176 7.176 24 F -0.180 7.180 25 F -0.172 7.172 26 H 0.093 0.907 27 H 0.028 0.972 28 H 0.010 0.990 29 H 0.262 0.738 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.395 0.605 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -2.791 16.316 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.174 3.826 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.341 5.341 13 C -0.059 4.059 14 C 0.409 3.591 15 O -0.455 6.455 16 N -0.410 5.410 17 C 0.106 3.894 18 C -0.230 4.230 19 C -0.177 4.177 20 C -0.230 4.230 21 C -0.175 4.175 22 C 0.399 3.601 23 F -0.158 7.158 24 F -0.162 7.162 25 F -0.154 7.154 26 H 0.112 0.888 27 H 0.047 0.953 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.232 0.768 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.288 -1.840 15.998 16.950 hybrid contribution 0.116 -1.382 -0.589 1.507 sum 5.403 -3.222 15.409 16.644 Atomic orbital electron populations 1.22094 0.98323 0.99326 1.00728 1.18862 0.90547 0.94302 0.78912 0.91680 1.21380 1.31643 1.12988 0.90336 0.92267 1.24878 0.94967 0.94991 0.98914 1.69885 1.36424 1.22656 1.23615 0.86455 0.78574 0.79589 0.82835 1.19870 1.20976 1.20945 1.47561 1.51091 1.11447 1.23966 1.21514 0.98218 0.83700 1.02432 1.15748 0.79318 0.84933 0.79123 1.90850 1.62617 1.15289 1.76748 1.45208 1.61795 1.12355 1.21595 1.20426 0.94901 0.89488 0.84630 1.22473 0.93494 1.03361 1.03689 1.22327 0.99545 0.91685 1.04145 1.23367 1.03340 1.04157 0.92140 1.22957 1.03237 0.94833 0.96477 1.20691 0.74404 0.80009 0.85029 1.93197 1.45490 1.92569 1.84500 1.93189 1.81951 1.52099 1.88950 1.93122 1.73423 1.79946 1.68864 0.88848 0.95272 0.97049 0.92763 0.93980 0.89796 0.93706 0.76814 0.90991 0.91519 0.87225 0.86814 0.87782 0.88552 0.88567 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.97 37.16 0.33 -3.12 16 2 C 0.27 6.84 2.64 -69.08 -0.18 6.66 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -13.90 7.99 -34.44 -0.28 -14.18 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.76 11.32 55.43 0.63 -24.14 16 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.61 -12.61 2.75 -181.00 -0.50 -13.11 16 13 C 0.09 1.42 9.24 59.85 0.55 1.98 16 14 C 0.71 14.09 7.69 -86.92 -0.67 13.42 16 15 O -0.58 -13.08 12.40 5.29 0.07 -13.01 16 16 N -0.75 -11.64 4.87 -52.42 -0.26 -11.89 16 17 C 0.20 2.69 0.47 -131.82 -0.06 2.62 16 18 C -0.17 -2.30 6.79 37.15 0.25 -2.05 16 19 C -0.16 -2.17 3.72 -90.62 -0.34 -2.50 16 20 C -0.19 -2.14 9.22 -26.73 -0.25 -2.39 16 21 C -0.14 -1.80 8.84 -26.73 -0.24 -2.04 16 22 C 0.45 5.60 2.17 37.16 0.08 5.68 16 23 F -0.18 -2.22 16.88 2.25 0.04 -2.18 16 24 F -0.18 -2.24 16.58 2.25 0.04 -2.20 16 25 F -0.17 -1.98 13.80 2.25 0.03 -1.95 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 27 H 0.03 0.63 7.67 -51.93 -0.40 0.24 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.48 7.02 -51.93 -0.36 1.12 16 32 H 0.04 0.61 6.29 -51.93 -0.33 0.28 16 33 H 0.40 5.44 5.90 -40.82 -0.24 5.20 16 34 H 0.07 0.80 6.71 -51.93 -0.35 0.45 16 35 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16 36 H 0.11 1.76 5.43 -51.92 -0.28 1.48 16 37 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.10 1.08 5.80 -51.93 -0.30 0.78 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.10 1.36 5.82 -51.92 -0.30 1.05 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -28.83 330.42 -6.16 -34.99 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.28 Total: 7.00 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.88 Total: 5.73 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.13 Total: -49.14 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.07 Total: -13.01 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.34 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.83 -6.16 -34.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933584732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.675 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds