Wall clock time and date at job start Tue Mar 31 2020 09:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47785 * 2 1 4 4 C 1.50704 * 109.46983 * 120.00418 * 2 1 3 5 5 H 1.08003 * 120.00343 * 119.99930 * 4 2 1 6 6 C 1.37886 * 119.99556 * 299.99532 * 4 2 1 7 7 N 1.31508 * 119.99891 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 119.99962 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47348 * 89.99525 * 8 6 4 10 10 H 1.48506 * 109.46854 * 209.99956 * 8 6 4 11 11 H 1.48508 * 109.47218 * 329.99641 * 8 6 4 12 12 N 1.46506 * 109.47403 * 239.99778 * 2 1 3 13 13 C 1.46499 * 119.99906 * 300.00638 * 12 2 1 14 14 C 1.34771 * 119.99938 * 120.00189 * 12 2 1 15 15 O 1.21586 * 120.00391 * 0.02562 * 14 12 2 16 16 N 1.34779 * 120.00037 * 180.02562 * 14 12 2 17 17 C 1.46504 * 120.00148 * 185.19741 * 16 14 12 18 18 C 1.52994 * 109.47140 * 295.24973 * 17 16 14 19 19 C 1.52998 * 109.46897 * 55.25127 * 17 16 14 20 20 C 1.52996 * 117.49972 * 174.99836 * 19 17 16 21 21 C 1.52999 * 117.50040 * 243.62416 * 19 17 16 22 22 C 1.52999 * 109.46905 * 175.24970 * 17 16 14 23 23 F 1.39902 * 109.47414 * 294.50850 * 22 17 16 24 24 F 1.39905 * 109.47186 * 54.50970 * 22 17 16 25 25 F 1.39899 * 109.47073 * 174.50825 * 22 17 16 26 26 H 1.08994 * 109.46834 * 300.00132 * 1 2 3 27 27 H 1.08999 * 109.46657 * 60.00136 * 1 2 3 28 28 H 1.09005 * 109.47126 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00246 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.46828 * 269.99640 * 13 12 2 31 31 H 1.09002 * 109.47207 * 29.99471 * 13 12 2 32 32 H 1.09000 * 109.47346 * 149.99921 * 13 12 2 33 33 H 0.97001 * 119.99649 * 5.19531 * 16 14 12 34 34 H 1.08999 * 109.47117 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.47580 * 300.00206 * 18 17 16 36 36 H 1.09008 * 109.47140 * 59.99938 * 18 17 16 37 37 H 1.09000 * 115.56118 * 29.31207 * 19 17 16 38 38 H 1.09002 * 117.49547 * 359.97438 * 20 19 17 39 39 H 1.08996 * 117.50104 * 214.97809 * 20 19 17 40 40 H 1.08990 * 117.50194 * 145.02127 * 21 19 17 41 41 H 1.09008 * 117.51464 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1379 -0.8591 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8728 2.6996 10 1 0.9760 1.9951 3.9068 11 1 0.8472 2.1765 1.4920 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7933 -0.0357 -2.0833 15 8 3.0874 1.1282 -1.8907 16 7 3.2422 -0.6709 -3.1840 17 6 4.1759 0.0034 -4.0893 18 6 3.4856 1.2106 -4.7273 19 6 5.4004 0.4735 -3.3016 20 6 6.5507 1.1005 -4.0917 21 6 5.6522 1.9804 -3.2202 22 6 4.6168 -0.9696 -5.1846 23 9 5.3569 -2.0105 -4.6134 24 9 3.4885 -1.4955 -5.8231 25 9 5.4082 -0.2928 -6.1188 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9033 -0.5279 4.4375 30 1 2.4157 -2.7378 -0.9716 31 1 0.6904 -2.3002 -0.9847 32 1 1.6238 -2.2853 -2.5002 33 1 2.9470 -1.5746 -3.3766 34 1 4.1804 1.7126 -5.4006 35 1 2.6132 0.8757 -5.2885 36 1 3.1714 1.9039 -3.9470 37 1 5.6577 -0.1275 -2.4295 38 1 6.4353 1.1778 -5.1729 39 1 7.5648 0.9121 -3.7395 40 1 6.0753 2.3708 -2.2947 41 1 4.9460 2.6372 -3.7282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933584733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:07 Heat of formation + Delta-G solvation = -129.014610 kcal Electronic energy + Delta-G solvation = -27866.083748 eV Core-core repulsion = 23561.368450 eV Total energy + Delta-G solvation = -4304.715297 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.32498 -47.84061 -47.73292 -40.19228 -38.04101 -35.55004 -34.40564 -32.76405 -30.99615 -29.43730 -26.86154 -26.30377 -25.11065 -23.74780 -22.31862 -22.00770 -20.15633 -18.93838 -18.57937 -18.53699 -18.10914 -17.02370 -16.48636 -16.28065 -15.52717 -15.22560 -14.67603 -14.55417 -14.48294 -14.23520 -14.11657 -13.94649 -13.84904 -13.72275 -13.32926 -12.96990 -12.74716 -12.44672 -12.26919 -12.23862 -12.05775 -11.80061 -11.61753 -11.45776 -11.16987 -11.04843 -10.68613 -10.41726 -10.18941 -10.11816 -9.64983 -9.43157 -9.22122 -9.03804 -8.63925 -7.71211 -6.14744 -4.15141 2.38246 2.84154 3.22874 3.36600 3.38840 3.42770 3.62988 3.91373 3.95524 4.08290 4.34583 4.36103 4.61070 4.75830 4.98672 5.15801 5.17783 5.29579 5.46167 5.54685 5.64530 5.69841 5.92157 6.00984 6.11042 6.14724 6.19268 6.23653 6.27155 6.31676 6.46131 6.50514 6.77403 6.83829 7.32772 7.50685 7.63907 8.36060 8.52697 8.86955 9.11823 9.46527 10.98124 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.004433 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.640028 B = 6314.087896 C = 6659.951243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.246 3.754 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.896 5.896 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.263 1.263 12 N -0.601 5.601 13 C 0.088 3.912 14 C 0.711 3.289 15 O -0.579 6.579 16 N -0.747 5.747 17 C 0.195 3.805 18 C -0.172 4.172 19 C -0.160 4.160 20 C -0.192 4.192 21 C -0.139 4.139 22 C 0.454 3.546 23 F -0.174 7.174 24 F -0.181 7.181 25 F -0.172 7.172 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.265 0.735 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.397 0.603 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.595 0.381 -18.658 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.144 3.856 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.713 3.287 9 H -0.205 1.205 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.335 5.335 13 C -0.056 4.056 14 C 0.412 3.588 15 O -0.456 6.456 16 N -0.407 5.407 17 C 0.105 3.895 18 C -0.229 4.229 19 C -0.179 4.179 20 C -0.229 4.229 21 C -0.176 4.176 22 C 0.399 3.601 23 F -0.156 7.156 24 F -0.163 7.163 25 F -0.153 7.153 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.234 0.766 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.801 1.195 -18.280 18.709 hybrid contribution -0.697 -0.242 0.081 0.742 sum 3.104 0.954 -18.198 18.486 Atomic orbital electron populations 1.22484 0.99306 1.01010 0.99254 1.19199 0.89597 0.94968 0.81804 0.91727 1.21181 1.32589 1.14226 0.88487 0.90421 1.24860 0.95702 0.96571 0.95618 1.69871 1.45254 1.40232 0.97966 0.86919 0.80396 0.83878 0.77485 1.20470 1.22203 1.18749 1.47128 1.51674 1.11588 1.23132 1.21519 1.02251 0.83229 0.98559 1.15660 0.79235 0.84862 0.79024 1.90848 1.62682 1.15108 1.76955 1.45144 1.50492 1.19220 1.25852 1.20444 0.91017 0.90894 0.87126 1.22467 1.00669 0.97471 1.02342 1.22359 0.94439 0.99161 1.01930 1.23365 0.95495 1.04949 0.99105 1.22956 1.01315 0.91829 1.01472 1.20659 0.75260 0.81081 0.83095 1.93212 1.77679 1.60278 1.84396 1.93185 1.51692 1.87770 1.83610 1.93125 1.74860 1.79670 1.67657 0.93120 0.94794 0.92606 0.92461 0.92804 0.90460 0.93572 0.76649 0.90853 0.91565 0.87379 0.86516 0.87801 0.88453 0.88477 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.65 37.16 0.32 -3.09 16 2 C 0.25 5.78 2.23 -69.08 -0.15 5.63 16 3 H 0.07 1.68 5.96 -51.93 -0.31 1.37 16 4 C -0.53 -14.32 8.95 -34.44 -0.31 -14.63 16 5 H 0.08 2.29 7.89 -52.48 -0.41 1.88 16 6 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 7 N -0.90 -26.77 13.96 55.43 0.77 -25.99 16 8 Si 0.88 21.55 24.37 -169.99 -4.14 17.41 16 9 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 12 N -0.60 -11.95 2.75 -181.00 -0.50 -12.45 16 13 C 0.09 1.41 9.49 59.85 0.57 1.98 16 14 C 0.71 13.51 7.69 -86.92 -0.67 12.84 16 15 O -0.58 -12.45 12.40 5.29 0.07 -12.38 16 16 N -0.75 -11.09 4.87 -52.42 -0.26 -11.35 16 17 C 0.20 2.58 0.47 -131.82 -0.06 2.52 16 18 C -0.17 -2.10 6.79 37.15 0.25 -1.85 16 19 C -0.16 -2.21 3.72 -90.62 -0.34 -2.55 16 20 C -0.19 -2.15 9.22 -26.73 -0.25 -2.39 16 21 C -0.14 -1.80 8.84 -26.73 -0.24 -2.04 16 22 C 0.45 5.44 2.17 37.16 0.08 5.52 16 23 F -0.17 -2.21 16.88 2.25 0.04 -2.18 16 24 F -0.18 -2.12 16.58 2.25 0.04 -2.08 16 25 F -0.17 -1.92 13.80 2.25 0.03 -1.89 16 26 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 1.09 6.66 -51.93 -0.35 0.74 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.22 6.43 -51.93 -0.33 0.89 16 32 H 0.05 0.57 6.29 -51.93 -0.33 0.24 16 33 H 0.40 5.17 5.90 -40.82 -0.24 4.93 16 34 H 0.07 0.75 6.71 -51.93 -0.35 0.40 16 35 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 36 H 0.11 1.57 5.43 -51.92 -0.28 1.29 16 37 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.10 1.06 5.80 -51.93 -0.30 0.76 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.10 1.28 5.82 -51.92 -0.30 0.98 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -30.44 322.92 -5.05 -35.49 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.08 Total: 6.59 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -0.89 Total: 3.96 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.02 Total: -49.79 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.38 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.11 Total: -6.14 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.44 -5.05 -35.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933584733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.524 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds