Wall clock time and date at job start Tue Mar 31 2020 09:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47061 * 2 1 4 4 C 1.34779 * 119.99845 * 274.85961 * 3 2 1 5 5 O 1.21691 * 119.99430 * 183.11295 * 4 3 2 6 6 C 1.46655 * 120.00192 * 3.10618 * 4 3 2 7 7 C 1.36544 * 125.98473 * 185.55927 * 6 4 3 8 8 C 1.40363 * 106.70705 * 179.97438 * 7 6 4 9 9 C 1.35138 * 107.11469 * 359.97438 * 8 7 6 10 10 C 1.50701 * 125.61647 * 180.02562 * 9 8 7 11 11 O 1.42903 * 109.46567 * 90.00624 * 10 9 8 12 12 C 1.42900 * 113.99554 * 180.02562 * 11 10 9 13 13 O 1.33936 * 108.76501 * 359.75597 * 9 8 7 14 14 C 1.46502 * 119.99681 * 94.85543 * 3 2 1 15 15 C 1.53491 * 114.20558 * 231.71638 * 14 3 2 16 16 N 1.47070 * 87.98574 * 220.15461 * 15 14 3 17 17 C 1.36935 * 136.05548 * 207.09555 * 16 15 14 18 18 H 1.08002 * 120.00515 * 354.69272 * 17 16 15 19 19 C 1.38815 * 120.00155 * 174.70026 * 17 16 15 20 20 N 1.31613 * 120.00401 * 183.81027 * 19 17 16 21 21 Si 1.86799 * 119.99649 * 3.80955 * 19 17 16 22 22 H 1.48504 * 109.46972 * 174.25532 * 21 19 17 23 23 H 1.48497 * 109.47282 * 294.25384 * 21 19 17 24 24 H 1.48500 * 109.47108 * 54.25559 * 21 19 17 25 25 C 1.47056 * 87.88579 * 27.34174 * 16 15 14 26 26 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46948 * 299.99683 * 1 2 3 28 28 H 1.08998 * 109.47237 * 59.99631 * 1 2 3 29 29 H 1.09003 * 109.46948 * 240.00317 * 2 1 3 30 30 H 1.08998 * 109.47237 * 120.00369 * 2 1 3 31 31 H 1.08000 * 126.64817 * 0.02562 * 7 6 4 32 32 H 1.08004 * 126.44780 * 180.02562 * 8 7 6 33 33 H 1.09005 * 109.46801 * 210.00373 * 10 9 8 34 34 H 1.08998 * 109.47514 * 330.00320 * 10 9 8 35 35 H 1.08999 * 109.47373 * 59.99523 * 12 11 10 36 36 H 1.08999 * 109.47417 * 180.02562 * 12 11 10 37 37 H 1.09001 * 109.46883 * 299.99742 * 12 11 10 38 38 H 1.08996 * 113.28258 * 4.78723 * 14 3 2 39 39 H 1.08996 * 113.46907 * 105.37404 * 15 14 3 40 40 H 1.09004 * 113.47256 * 334.92954 * 15 14 3 41 41 H 0.97009 * 120.00099 * 5.00952 * 20 19 17 42 42 H 1.08997 * 113.46722 * 87.44033 * 25 16 15 43 43 H 1.08999 * 113.47307 * 217.88149 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1498 2.0495 -1.1630 5 8 2.6087 3.1766 -1.1686 6 6 1.7399 1.4184 -2.4218 7 6 1.9154 1.9359 -3.6731 8 6 1.3779 1.0036 -4.5743 9 6 0.9044 -0.0293 -3.8428 10 6 0.2388 -1.2634 -4.3950 11 8 1.2273 -2.2626 -4.6534 12 6 0.6985 -3.4799 -5.1829 13 8 1.1295 0.2218 -2.5466 14 6 2.3638 2.0360 1.2642 15 6 1.6956 3.4027 1.4682 16 7 2.9650 3.8804 2.0368 17 6 3.3428 4.8415 2.9361 18 1 2.6074 5.5202 3.3421 19 6 4.6713 4.9437 3.3257 20 7 5.0220 5.8172 4.2455 21 14 5.9611 3.8411 2.5445 22 1 7.3087 4.2381 3.0257 23 1 5.6978 2.4286 2.9196 24 1 5.9021 3.9802 1.0672 25 6 3.6505 2.8760 1.2099 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.3788 2.8793 -3.9214 32 1 1.3491 1.0942 -5.6502 33 1 -0.4810 -1.6433 -3.6699 34 1 -0.2769 -1.0141 -5.3224 35 1 0.1927 -3.2763 -6.1267 36 1 1.5114 -4.1864 -5.3510 37 1 -0.0119 -3.9060 -4.4745 38 1 2.2956 1.3721 2.1260 39 1 0.8777 3.3828 2.1884 40 1 1.4246 3.8971 0.5353 41 1 4.3439 6.3385 4.7031 42 1 3.8948 3.2313 0.2088 43 1 4.4981 2.4072 1.7098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950820642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:02 Heat of formation + Delta-G solvation = 26.958655 kcal Electronic energy + Delta-G solvation = -26130.205340 eV Core-core repulsion = 22374.110291 eV Total energy + Delta-G solvation = -3756.095049 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.93055 -40.23083 -38.30945 -37.32667 -35.71789 -33.28134 -32.31649 -31.44158 -30.31201 -28.25367 -27.24241 -25.97981 -25.22408 -23.82028 -23.17598 -21.88752 -21.41102 -20.14454 -19.35226 -17.60504 -17.31404 -17.13979 -16.65056 -16.26652 -16.11419 -15.94685 -15.28672 -14.88086 -14.58205 -14.18301 -13.92580 -13.47257 -13.27821 -13.17133 -13.09984 -13.04054 -12.89726 -12.49795 -12.29769 -12.01648 -11.93049 -11.62811 -11.47666 -11.15327 -11.02244 -10.62824 -10.28713 -10.25406 -10.13258 -9.74974 -9.23056 -9.00925 -8.80709 -8.80022 -8.26389 -6.99298 -6.21843 -3.12547 0.87726 2.05519 2.37350 3.02621 3.22349 3.47537 3.53640 3.58402 3.75694 4.26239 4.46972 4.63190 4.69090 4.76427 4.79232 4.86746 4.88672 4.92462 5.00532 5.06895 5.20482 5.32044 5.38291 5.42464 5.49923 5.54534 5.62489 5.68258 5.72704 5.80559 6.05403 6.17805 6.18380 6.33709 6.40106 6.42841 6.53065 6.62448 6.75109 7.17804 7.24429 7.49015 8.20059 8.31979 9.07033 9.59411 10.46854 11.30224 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.027079 B = 0.003369 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.748149 B = 8309.389981 C = 8472.195750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.101 3.899 3 N -0.590 5.590 4 C 0.593 3.407 5 O -0.494 6.494 6 C -0.054 4.054 7 C -0.129 4.129 8 C -0.190 4.190 9 C -0.006 4.006 10 C 0.142 3.858 11 O -0.384 6.384 12 C 0.031 3.969 13 O -0.146 6.146 14 C 0.098 3.902 15 C 0.117 3.883 16 N -0.621 5.621 17 C -0.295 4.295 18 H 0.082 0.918 19 C -0.025 4.025 20 N -0.937 5.937 21 Si 1.073 2.927 22 H -0.297 1.297 23 H -0.293 1.293 24 H -0.287 1.287 25 C 0.076 3.924 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.118 0.882 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.259 0.741 42 H 0.080 0.920 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.977 -20.817 -19.837 31.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.022 4.022 3 N -0.322 5.322 4 C 0.379 3.621 5 O -0.371 6.371 6 C -0.106 4.106 7 C -0.150 4.150 8 C -0.209 4.209 9 C -0.058 4.058 10 C 0.066 3.934 11 O -0.304 6.304 12 C -0.065 4.065 13 O -0.042 6.042 14 C -0.006 4.006 15 C -0.010 4.010 16 N -0.349 5.349 17 C -0.421 4.421 18 H 0.100 0.900 19 C -0.223 4.223 20 N -0.580 5.580 21 Si 0.907 3.093 22 H -0.224 1.224 23 H -0.222 1.222 24 H -0.214 1.214 25 C -0.049 4.049 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.180 0.820 32 H 0.173 0.827 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.136 0.864 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.910 -20.480 -19.369 30.226 hybrid contribution -2.033 0.304 -0.281 2.075 sum -12.943 -20.176 -19.650 30.996 Atomic orbital electron populations 1.22178 0.95654 1.01954 1.02496 1.21746 0.94850 0.82175 1.03393 1.47952 1.63971 1.14032 1.06273 1.16706 0.79117 0.85160 0.81068 1.90924 1.43891 1.17293 1.84949 1.22374 1.05060 0.86552 0.96651 1.21970 1.01243 1.01331 0.90445 1.21597 1.03610 0.94747 1.00928 1.22226 1.04148 0.97680 0.81708 1.20696 0.89334 0.84073 0.99316 1.88005 1.33234 1.24241 1.84890 1.22806 1.00263 0.85962 0.97495 1.84284 1.60152 1.33206 1.26602 1.23739 0.99373 0.93613 0.83836 1.22674 0.91028 0.90440 0.96906 1.45770 1.02250 1.41134 1.45716 1.20135 0.96080 1.09573 1.16319 0.90027 1.25684 0.96638 1.00937 0.99090 1.70926 1.35491 1.25661 1.25907 0.83670 0.75724 0.74273 0.75642 1.22416 1.22222 1.21401 1.23506 0.94287 0.89710 0.97425 0.91760 0.92173 0.92389 0.89763 0.89825 0.82015 0.82704 0.91132 0.89769 0.93686 0.89125 0.93639 0.86386 0.93952 0.93111 0.93050 0.90281 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.66 37.16 0.36 -1.30 16 2 C 0.10 1.18 5.72 -4.04 -0.02 1.16 16 3 N -0.59 -9.34 2.77 -167.27 -0.46 -9.80 16 4 C 0.59 10.20 7.09 -12.86 -0.09 10.11 16 5 O -0.49 -10.40 12.40 5.20 0.06 -10.33 16 6 C -0.05 -0.77 6.52 -36.80 -0.24 -1.01 16 7 C -0.13 -1.65 10.63 -39.39 -0.42 -2.07 16 8 C -0.19 -1.94 10.77 -39.89 -0.43 -2.37 16 9 C -0.01 -0.06 6.94 -35.41 -0.25 -0.30 16 10 C 0.14 0.99 6.46 36.01 0.23 1.22 16 11 O -0.38 -3.26 10.69 -35.23 -0.38 -3.64 16 12 C 0.03 0.15 11.01 101.05 1.11 1.26 16 13 O -0.15 -1.75 5.75 4.99 0.03 -1.72 16 14 C 0.10 1.84 4.80 -67.68 -0.32 1.52 16 15 C 0.12 2.56 8.09 -8.51 -0.07 2.49 16 16 N -0.62 -16.58 3.69 -184.64 -0.68 -17.26 16 17 C -0.29 -9.01 11.09 -15.06 -0.17 -9.17 16 18 H 0.08 2.60 8.05 -52.49 -0.42 2.18 16 19 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 20 N -0.94 -30.75 13.70 55.49 0.76 -29.99 16 21 Si 1.07 28.71 25.10 -169.99 -4.27 24.44 16 22 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 23 H -0.29 -7.30 6.35 56.52 0.36 -6.94 16 24 H -0.29 -7.49 6.66 56.52 0.38 -7.12 16 25 C 0.08 1.81 5.29 -8.38 -0.04 1.76 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.64 6.59 -51.93 -0.34 0.29 16 29 H 0.08 0.96 5.73 -51.93 -0.30 0.66 16 30 H 0.08 0.85 7.90 -51.93 -0.41 0.44 16 31 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.12 1.99 7.94 -51.93 -0.41 1.58 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 1.17 6.36 -51.93 -0.33 0.83 16 41 H 0.26 8.38 8.73 -40.82 -0.36 8.02 16 42 H 0.08 1.99 5.26 -51.93 -0.27 1.72 16 43 H 0.05 1.16 4.01 -51.93 -0.21 0.95 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -36.93 345.60 -6.31 -43.25 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -6.14 Total: -2.55 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.44 Total: 2.40 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.38 Total: -57.05 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.28 Total: -15.69 kcal Atomic # 14 Polarization: 28.71 SS G_CDS: -4.27 Total: 24.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.93 -6.31 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950820642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.205 kcal (2) G-P(sol) polarization free energy of solvation -36.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds