Wall clock time and date at job start Tue Mar 31 2020 09:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46842 * 2 1 4 4 C 1.50696 * 109.46987 * 120.00527 * 2 1 3 5 5 O 1.21275 * 120.00235 * 113.08092 * 4 2 1 6 6 N 1.34779 * 119.99830 * 293.07693 * 4 2 1 7 7 C 1.46924 * 120.62860 * 176.25056 * 6 4 2 8 8 C 1.53195 * 108.77626 * 126.66564 * 7 6 4 9 9 C 1.53039 * 109.31220 * 54.63265 * 8 7 6 10 10 N 1.46498 * 109.45174 * 178.61718 * 9 8 7 11 11 C 1.46504 * 119.99498 * 60.06824 * 10 9 8 12 12 C 1.36928 * 120.00738 * 240.06378 * 10 9 8 13 13 H 1.08003 * 119.99881 * 17.96664 * 12 10 9 14 14 C 1.38819 * 120.00575 * 197.97072 * 12 10 9 15 15 N 1.31615 * 119.99179 * 16.17286 * 14 12 10 16 16 Si 1.86801 * 120.00204 * 196.17197 * 14 12 10 17 17 H 1.48498 * 109.46634 * 89.99871 * 16 14 12 18 18 H 1.48494 * 109.47038 * 210.00031 * 16 14 12 19 19 H 1.48499 * 109.47061 * 329.99846 * 16 14 12 20 20 C 1.53035 * 109.53970 * 298.63909 * 9 8 7 21 21 C 1.46928 * 120.63254 * 356.53017 * 6 4 2 22 22 C 1.52998 * 109.46679 * 240.00510 * 2 1 3 23 23 F 1.39899 * 109.47159 * 299.99767 * 22 2 1 24 24 F 1.39894 * 109.47464 * 60.00239 * 22 2 1 25 25 F 1.39903 * 109.46722 * 179.97438 * 22 2 1 26 26 H 1.08998 * 109.47216 * 185.20545 * 1 2 3 27 27 H 1.08998 * 109.46690 * 305.20154 * 1 2 3 28 28 H 1.08998 * 109.47147 * 65.20586 * 1 2 3 29 29 H 1.08999 * 109.58872 * 246.45023 * 7 6 4 30 30 H 1.09004 * 109.58676 * 6.88298 * 7 6 4 31 31 H 1.09004 * 109.49862 * 294.68706 * 8 7 6 32 32 H 1.09003 * 109.49785 * 174.58384 * 8 7 6 33 33 H 1.09007 * 109.45875 * 58.65957 * 9 8 7 34 34 H 1.08998 * 109.47528 * 95.22615 * 11 10 9 35 35 H 1.09004 * 109.46934 * 215.22388 * 11 10 9 36 36 H 1.08997 * 109.47279 * 335.21942 * 11 10 9 37 37 H 0.97007 * 119.99306 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.49721 * 301.40801 * 20 9 8 39 39 H 1.09001 * 109.52783 * 181.33456 * 20 9 8 40 40 H 1.08998 * 109.58448 * 353.11789 * 21 6 4 41 41 H 1.09002 * 109.58552 * 113.40273 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.6227 -1.7645 1.1235 6 7 1.8256 -0.1746 2.4496 7 6 2.2363 -0.8941 3.6630 8 6 3.1194 0.0290 4.5085 9 6 2.3729 1.3379 4.7762 10 7 3.2015 2.2099 5.6124 11 6 4.5176 2.6448 5.1378 12 6 2.7461 2.6187 6.8373 13 1 1.9351 2.0898 7.3158 14 6 3.3267 3.7128 7.4641 15 7 4.0776 4.5445 6.7738 16 14 3.0420 4.0046 9.2871 17 1 4.0961 3.3108 10.0698 18 1 3.0941 5.4615 9.5692 19 1 1.7096 3.4733 9.6713 20 6 2.0746 2.0378 3.4484 21 6 1.1797 1.1376 2.5909 22 6 2.0400 -0.7211 -1.2493 23 9 1.5736 -2.0401 -1.2494 24 9 1.5737 -0.0616 -2.3915 25 9 3.4390 -0.7206 -1.2496 26 1 -0.3633 -1.0234 0.0932 27 1 -0.3632 0.5924 0.8397 28 1 -0.3633 0.4310 -0.9329 29 1 1.3535 -1.1797 4.2349 30 1 2.7993 -1.7855 3.3863 31 1 4.0438 0.2409 3.9711 32 1 3.3520 -0.4574 5.4558 33 1 1.4368 1.1232 5.2919 34 1 4.4287 3.6232 4.6658 35 1 5.2049 2.7095 5.9814 36 1 4.8986 1.9251 4.4132 37 1 4.4836 5.3089 7.2118 38 1 3.0088 2.2307 2.9209 39 1 1.5639 2.9814 3.6406 40 1 1.0455 1.5866 1.6068 41 1 0.2096 1.0172 3.0731 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985578956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:30 Heat of formation + Delta-G solvation = -164.788429 kcal Electronic energy + Delta-G solvation = -27073.056624 eV Core-core repulsion = 22766.790057 eV Total energy + Delta-G solvation = -4306.266566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.20041 -47.72450 -47.59362 -40.41603 -37.71763 -35.27305 -34.40533 -32.15083 -30.78343 -29.75999 -26.76045 -26.06589 -25.33759 -23.66205 -22.83775 -21.85584 -20.13408 -19.12491 -18.60729 -18.37716 -17.48577 -16.92236 -16.78612 -15.83316 -15.30793 -15.10597 -14.61307 -14.47642 -14.07750 -14.03092 -14.01380 -13.81144 -13.75782 -13.66482 -13.54953 -13.44344 -13.20729 -12.64163 -12.43145 -12.32543 -12.15064 -11.77119 -11.65624 -11.55421 -11.06084 -10.91004 -10.81967 -10.42595 -10.27645 -10.26717 -9.94020 -9.86039 -9.66151 -8.68113 -8.55677 -6.86223 -5.76742 -3.18525 2.33231 2.40771 2.88613 3.35566 3.42304 3.43342 3.50881 3.81961 3.84884 4.35214 4.44616 4.55377 4.66169 4.91143 5.08506 5.17564 5.19389 5.26799 5.31839 5.40655 5.47712 5.62657 5.64549 5.79055 5.90178 6.06137 6.15411 6.26839 6.40551 6.48810 6.73093 6.88396 6.89473 7.26569 7.37660 7.66912 7.77498 7.93349 8.33064 9.18892 9.83493 10.30750 11.28299 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.032438 B = 0.003200 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.966829 B = 8746.551009 C = 8827.429320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.165 4.165 3 H 0.138 0.862 4 C 0.523 3.477 5 O -0.530 6.530 6 N -0.596 5.596 7 C 0.116 3.884 8 C -0.147 4.147 9 C 0.180 3.820 10 N -0.597 5.597 11 C 0.164 3.836 12 C -0.255 4.255 13 H 0.070 0.930 14 C 0.001 3.999 15 N -0.907 5.907 16 Si 0.903 3.097 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.280 1.280 20 C -0.148 4.148 21 C 0.102 3.898 22 C 0.473 3.527 23 F -0.171 7.171 24 F -0.183 7.183 25 F -0.174 7.174 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.027 0.973 35 H 0.043 0.957 36 H -0.002 1.002 37 H 0.252 0.748 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.857 -7.882 -14.345 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.187 4.187 3 H 0.156 0.844 4 C 0.309 3.691 5 O -0.406 6.406 6 N -0.329 5.329 7 C -0.006 4.006 8 C -0.188 4.188 9 C 0.071 3.929 10 N -0.318 5.318 11 C 0.019 3.981 12 C -0.385 4.385 13 H 0.088 0.912 14 C -0.197 4.197 15 N -0.552 5.552 16 Si 0.733 3.267 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.205 1.205 20 C -0.188 4.188 21 C -0.021 4.021 22 C 0.419 3.581 23 F -0.152 7.152 24 F -0.164 7.164 25 F -0.156 7.156 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.017 0.983 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.423 -8.287 -14.323 18.137 hybrid contribution 0.068 0.431 0.785 0.898 sum -7.355 -7.856 -13.538 17.295 Atomic orbital electron populations 1.21942 0.89172 1.04854 1.05085 1.22643 1.01486 1.03108 0.91473 0.84415 1.19658 0.79888 0.85496 0.84103 1.90782 1.41230 1.22713 1.85898 1.48034 1.59269 1.20155 1.05411 1.21729 0.99099 0.95743 0.84067 1.22497 0.99251 0.97572 0.99435 1.20261 0.93827 0.89013 0.89782 1.43994 1.14948 1.55783 1.17085 1.20755 0.85875 0.95050 0.96389 1.19252 1.17255 1.08778 0.93188 0.91221 1.24903 1.00595 0.95779 0.98460 1.70110 1.36926 1.14188 1.33990 0.86275 0.77878 0.76958 0.85559 1.21557 1.21841 1.20548 1.22554 0.99417 0.98996 0.97870 1.22064 0.96706 0.82382 1.00946 1.19772 0.75934 0.77906 0.84513 1.93204 1.88257 1.37109 1.96653 1.93175 1.88579 1.80884 1.53789 1.93220 1.29323 1.96360 1.96666 0.90575 0.89172 0.89956 0.91331 0.89351 0.91885 0.90598 0.91818 0.95493 0.93800 0.98340 0.93783 0.91991 0.90264 0.90340 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.60 37.16 0.32 -0.80 16 2 C -0.16 -1.66 1.86 -91.77 -0.17 -1.83 16 3 H 0.14 1.12 7.16 -51.93 -0.37 0.74 16 4 C 0.52 7.01 6.76 -10.99 -0.07 6.94 16 5 O -0.53 -8.97 14.28 5.56 0.08 -8.89 16 6 N -0.60 -7.60 2.97 -172.77 -0.51 -8.12 16 7 C 0.12 1.57 6.44 -3.71 -0.02 1.55 16 8 C -0.15 -2.38 5.32 -26.61 -0.14 -2.52 16 9 C 0.18 3.27 2.55 -67.89 -0.17 3.10 16 10 N -0.60 -14.00 2.82 -173.43 -0.49 -14.49 16 11 C 0.16 3.90 8.03 59.85 0.48 4.38 16 12 C -0.26 -6.68 9.64 -15.06 -0.15 -6.83 16 13 H 0.07 1.78 7.79 -52.48 -0.41 1.37 16 14 C 0.00 0.02 5.05 -17.43 -0.09 -0.07 16 15 N -0.91 -25.70 10.60 55.49 0.59 -25.11 16 16 Si 0.90 21.27 29.58 -169.99 -5.03 16.24 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.15 -2.28 5.34 -26.62 -0.14 -2.42 16 21 C 0.10 1.13 5.06 -3.71 -0.02 1.11 16 22 C 0.47 5.60 2.43 37.16 0.09 5.69 16 23 F -0.17 -2.27 15.82 2.25 0.04 -2.24 16 24 F -0.18 -1.93 16.71 2.25 0.04 -1.90 16 25 F -0.17 -2.43 16.57 2.25 0.04 -2.39 16 26 H 0.08 0.60 7.95 -51.93 -0.41 0.19 16 27 H 0.09 0.55 5.92 -51.93 -0.31 0.24 16 28 H 0.08 0.49 7.66 -51.93 -0.40 0.09 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 31 H 0.06 1.10 6.72 -51.93 -0.35 0.75 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.16 7.83 -51.92 -0.41 0.75 16 34 H 0.03 0.69 7.45 -51.93 -0.39 0.30 16 35 H 0.04 1.15 7.09 -51.93 -0.37 0.78 16 36 H 0.00 -0.04 6.47 -51.93 -0.34 -0.38 16 37 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.06 1.02 7.72 -51.93 -0.40 0.62 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 0.67 4.88 -51.93 -0.25 0.41 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 330.25 15.07 4.98 4.98 Total: -1.00 -30.82 330.25 -5.95 -36.78 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -5.59 Total: -3.17 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -0.09 Total: 8.30 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.41 Total: -47.72 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.89 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.11 Total: -6.52 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.82 -5.95 -36.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985578956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.013 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds