Wall clock time and date at job start Tue Mar 31 2020 09:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46842 * 2 1 4 4 C 1.50696 * 109.46987 * 120.00527 * 2 1 3 5 5 O 1.21275 * 120.00235 * 113.08092 * 4 2 1 6 6 N 1.34779 * 119.99830 * 293.07693 * 4 2 1 7 7 C 1.46924 * 120.62860 * 176.25056 * 6 4 2 8 8 C 1.53195 * 108.77626 * 126.66564 * 7 6 4 9 9 C 1.53039 * 109.31220 * 54.63265 * 8 7 6 10 10 N 1.46498 * 109.45174 * 178.61718 * 9 8 7 11 11 C 1.46504 * 119.99498 * 60.06824 * 10 9 8 12 12 C 1.36928 * 120.00738 * 240.06378 * 10 9 8 13 13 H 1.08003 * 119.99881 * 17.96664 * 12 10 9 14 14 C 1.38819 * 120.00575 * 197.97072 * 12 10 9 15 15 N 1.31615 * 119.99179 * 16.17286 * 14 12 10 16 16 Si 1.86801 * 120.00204 * 196.17197 * 14 12 10 17 17 H 1.48498 * 109.46634 * 89.99871 * 16 14 12 18 18 H 1.48494 * 109.47038 * 210.00031 * 16 14 12 19 19 H 1.48499 * 109.47061 * 329.99846 * 16 14 12 20 20 C 1.53035 * 109.53970 * 298.63909 * 9 8 7 21 21 C 1.46928 * 120.63254 * 356.53017 * 6 4 2 22 22 C 1.52998 * 109.46679 * 240.00510 * 2 1 3 23 23 F 1.39899 * 109.47159 * 299.99767 * 22 2 1 24 24 F 1.39894 * 109.47464 * 60.00239 * 22 2 1 25 25 F 1.39903 * 109.46722 * 179.97438 * 22 2 1 26 26 H 1.08998 * 109.47216 * 185.20545 * 1 2 3 27 27 H 1.08998 * 109.46690 * 305.20154 * 1 2 3 28 28 H 1.08998 * 109.47147 * 65.20586 * 1 2 3 29 29 H 1.08999 * 109.58872 * 246.45023 * 7 6 4 30 30 H 1.09004 * 109.58676 * 6.88298 * 7 6 4 31 31 H 1.09004 * 109.49862 * 294.68706 * 8 7 6 32 32 H 1.09003 * 109.49785 * 174.58384 * 8 7 6 33 33 H 1.09007 * 109.45875 * 58.65957 * 9 8 7 34 34 H 1.08998 * 109.47528 * 95.22615 * 11 10 9 35 35 H 1.09004 * 109.46934 * 215.22388 * 11 10 9 36 36 H 1.08997 * 109.47279 * 335.21942 * 11 10 9 37 37 H 0.97007 * 119.99306 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.49721 * 301.40801 * 20 9 8 39 39 H 1.09001 * 109.52783 * 181.33456 * 20 9 8 40 40 H 1.08998 * 109.58448 * 353.11789 * 21 6 4 41 41 H 1.09002 * 109.58552 * 113.40273 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.6227 -1.7645 1.1235 6 7 1.8256 -0.1746 2.4496 7 6 2.2363 -0.8941 3.6630 8 6 3.1194 0.0290 4.5085 9 6 2.3729 1.3379 4.7762 10 7 3.2015 2.2099 5.6124 11 6 4.5176 2.6448 5.1378 12 6 2.7461 2.6187 6.8373 13 1 1.9351 2.0898 7.3158 14 6 3.3267 3.7128 7.4641 15 7 4.0776 4.5445 6.7738 16 14 3.0420 4.0046 9.2871 17 1 4.0961 3.3108 10.0698 18 1 3.0941 5.4615 9.5692 19 1 1.7096 3.4733 9.6713 20 6 2.0746 2.0378 3.4484 21 6 1.1797 1.1376 2.5909 22 6 2.0400 -0.7211 -1.2493 23 9 1.5736 -2.0401 -1.2494 24 9 1.5737 -0.0616 -2.3915 25 9 3.4390 -0.7206 -1.2496 26 1 -0.3633 -1.0234 0.0932 27 1 -0.3632 0.5924 0.8397 28 1 -0.3633 0.4310 -0.9329 29 1 1.3535 -1.1797 4.2349 30 1 2.7993 -1.7855 3.3863 31 1 4.0438 0.2409 3.9711 32 1 3.3520 -0.4574 5.4558 33 1 1.4368 1.1232 5.2919 34 1 4.4287 3.6232 4.6658 35 1 5.2049 2.7095 5.9814 36 1 4.8986 1.9251 4.4132 37 1 4.4836 5.3089 7.2118 38 1 3.0088 2.2307 2.9209 39 1 1.5639 2.9814 3.6406 40 1 1.0455 1.5866 1.6068 41 1 0.2096 1.0172 3.0731 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985578956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:29 Heat of formation + Delta-G solvation = -183.053541 kcal Electronic energy + Delta-G solvation = -27073.848658 eV Core-core repulsion = 22766.790057 eV Total energy + Delta-G solvation = -4307.058601 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.12691 -48.63250 -48.57163 -41.48319 -39.06541 -36.78460 -35.34926 -33.77357 -31.91342 -31.42061 -28.03716 -27.49317 -26.66452 -24.85953 -24.07877 -23.20109 -21.32574 -20.22573 -19.62272 -19.37246 -18.77318 -18.39064 -17.93664 -16.95826 -16.83714 -16.31233 -15.74580 -15.54668 -15.44608 -15.16843 -15.06363 -15.00329 -14.78494 -14.74394 -14.67927 -14.63150 -14.41874 -13.89540 -13.73536 -13.34607 -13.18675 -12.99943 -12.97242 -12.77072 -12.63660 -12.42780 -12.34505 -12.13082 -12.03287 -11.78868 -11.62856 -11.25449 -10.93897 -10.58618 -9.75059 -8.80310 -7.80007 -5.22570 1.34989 1.48084 1.48613 1.50753 1.57908 1.93485 2.53073 2.64046 2.91474 2.99725 3.33500 3.48465 3.62982 3.80794 3.85044 3.98421 4.09490 4.17544 4.29998 4.39898 4.54631 4.65765 4.67801 4.70439 4.79578 4.83762 4.90351 5.00239 5.08781 5.14842 5.26779 5.36577 5.50983 5.58227 5.67828 5.73749 6.24439 6.34088 6.91302 7.17593 7.91936 8.34754 9.23742 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.032438 B = 0.003200 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.966829 B = 8746.551009 C = 8827.429320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.158 4.158 3 H 0.163 0.837 4 C 0.520 3.480 5 O -0.570 6.570 6 N -0.595 5.595 7 C 0.123 3.877 8 C -0.135 4.135 9 C 0.172 3.828 10 N -0.612 5.612 11 C 0.184 3.816 12 C -0.257 4.257 13 H 0.077 0.923 14 C -0.055 4.055 15 N -0.940 5.940 16 Si 0.963 3.037 17 H -0.292 1.292 18 H -0.299 1.299 19 H -0.266 1.266 20 C -0.139 4.139 21 C 0.109 3.891 22 C 0.468 3.532 23 F -0.182 7.182 24 F -0.174 7.174 25 F -0.191 7.191 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.002 0.998 35 H 0.011 0.989 36 H 0.021 0.979 37 H 0.245 0.755 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.114 0.886 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.121 -8.198 -15.061 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 H 0.181 0.819 4 C 0.307 3.693 5 O -0.450 6.450 6 N -0.327 5.327 7 C 0.001 3.999 8 C -0.175 4.175 9 C 0.065 3.935 10 N -0.335 5.335 11 C 0.039 3.961 12 C -0.387 4.387 13 H 0.094 0.906 14 C -0.250 4.250 15 N -0.587 5.587 16 Si 0.792 3.208 17 H -0.220 1.220 18 H -0.225 1.225 19 H -0.190 1.190 20 C -0.179 4.179 21 C -0.013 4.013 22 C 0.414 3.586 23 F -0.164 7.164 24 F -0.156 7.156 25 F -0.173 7.173 26 H 0.087 0.913 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.021 0.979 35 H 0.030 0.970 36 H 0.040 0.960 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.732 -8.624 -15.057 19.895 hybrid contribution 0.779 0.463 0.964 1.323 sum -8.953 -8.161 -14.093 18.584 Atomic orbital electron populations 1.22033 0.86642 1.05087 1.06991 1.22729 1.03361 1.03326 0.88565 0.81912 1.20193 0.79008 0.85119 0.84955 1.90770 1.43000 1.24697 1.86505 1.48079 1.59037 1.20545 1.05037 1.21590 0.99357 0.94698 0.84304 1.22300 0.98788 0.97007 0.99392 1.20537 0.93364 0.88965 0.90585 1.44222 1.15485 1.56232 1.17511 1.20395 0.85975 0.94530 0.95227 1.19621 1.16626 1.08094 0.94350 0.90573 1.25615 1.01232 0.96118 1.02004 1.70264 1.38517 1.14735 1.35191 0.85318 0.78117 0.76175 0.81181 1.21978 1.22545 1.19013 1.22343 0.99685 0.99171 0.96727 1.22168 0.96207 0.80658 1.02266 1.20097 0.75221 0.77721 0.85608 1.93180 1.88276 1.38169 1.96768 1.93189 1.88334 1.80550 1.53482 1.93188 1.30856 1.96415 1.96805 0.91271 0.87225 0.88045 0.89111 0.90183 0.93636 0.91451 0.91366 0.97938 0.97029 0.96039 0.94541 0.93443 0.91327 0.86796 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.60 71.98 0.62 -0.95 16 2 C -0.16 -2.67 1.86 -11.54 -0.02 -2.69 16 3 H 0.16 1.94 7.16 -2.39 -0.02 1.92 16 4 C 0.52 12.72 6.76 87.66 0.59 13.31 16 5 O -0.57 -18.75 14.28 -3.01 -0.04 -18.79 16 6 N -0.60 -13.45 2.97 -818.91 -2.43 -15.88 16 7 C 0.12 3.09 6.44 86.36 0.56 3.65 16 8 C -0.13 -4.21 5.32 30.67 0.16 -4.04 16 9 C 0.17 6.02 2.55 45.02 0.11 6.14 16 10 N -0.61 -28.72 2.82 -702.63 -1.98 -30.70 16 11 C 0.18 8.94 8.03 127.77 1.03 9.97 16 12 C -0.26 -13.38 9.64 84.04 0.81 -12.57 16 13 H 0.08 3.79 7.79 -2.91 -0.02 3.77 16 14 C -0.06 -2.99 5.05 84.86 0.43 -2.56 16 15 N -0.94 -54.50 10.60 21.65 0.23 -54.27 16 16 Si 0.96 43.96 29.58 68.60 2.03 45.99 16 17 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 18 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 C -0.14 -3.99 5.34 30.67 0.16 -3.83 16 21 C 0.11 1.98 5.06 86.36 0.44 2.42 16 22 C 0.47 10.20 2.43 71.98 0.17 10.38 16 23 F -0.18 -4.64 15.82 44.97 0.71 -3.93 16 24 F -0.17 -3.27 16.71 44.97 0.75 -2.51 16 25 F -0.19 -5.16 16.57 44.97 0.75 -4.41 16 26 H 0.07 0.87 7.95 -2.39 -0.02 0.85 16 27 H 0.11 0.74 5.92 -2.39 -0.01 0.72 16 28 H 0.10 0.73 7.66 -2.39 -0.02 0.71 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 2.21 7.00 -2.39 -0.02 2.19 16 31 H 0.04 1.57 6.72 -2.38 -0.02 1.55 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.33 7.83 -2.38 -0.02 2.31 16 34 H 0.00 0.13 7.45 -2.39 -0.02 0.11 16 35 H 0.01 0.60 7.09 -2.38 -0.02 0.58 16 36 H 0.02 0.91 6.47 -2.39 -0.02 0.90 16 37 H 0.25 13.97 8.31 -92.70 -0.77 13.19 16 38 H 0.05 1.50 7.72 -2.39 -0.02 1.48 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.11 1.34 4.88 -2.39 -0.01 1.32 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -68.70 330.25 6.12 -62.57 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 1.05 Total: 2.73 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 5.06 Total: 19.21 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -4.18 Total: -100.86 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.04 Total: -18.79 kcal Atomic # 9 Polarization: -13.06 SS G_CDS: 2.21 Total: -10.85 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.70 6.12 -62.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985578956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.481 kcal (2) G-P(sol) polarization free energy of solvation -68.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds