Wall clock time and date at job start Tue Mar 31 2020 09:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47387 * 2 1 4 4 C 1.50704 * 109.47306 * 119.99989 * 2 1 3 5 5 O 1.21284 * 119.99673 * 86.49043 * 4 2 1 6 6 N 1.34777 * 120.00165 * 266.49236 * 4 2 1 7 7 C 1.48108 * 127.03536 * 174.85032 * 6 4 2 8 8 C 1.55116 * 103.31717 * 140.79826 * 7 6 4 9 9 H 1.08994 * 110.82784 * 155.59931 * 8 7 6 10 10 N 1.46503 * 110.72085 * 278.97803 * 8 7 6 11 11 C 1.36936 * 119.99787 * 268.31113 * 10 8 7 12 12 H 1.08003 * 119.99906 * 0.02562 * 11 10 8 13 13 C 1.38817 * 119.99953 * 180.02562 * 11 10 8 14 14 N 1.31616 * 119.99758 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99931 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46992 * 89.99705 * 15 13 11 17 17 H 1.48503 * 109.47021 * 209.99447 * 15 13 11 18 18 H 1.48500 * 109.47458 * 329.99775 * 15 13 11 19 19 C 1.54611 * 102.75556 * 37.26255 * 8 7 6 20 20 C 1.53007 * 110.32663 * 219.31773 * 19 8 7 21 21 C 1.53005 * 110.32670 * 97.20882 * 19 8 7 22 22 C 1.47483 * 127.03234 * 354.88759 * 6 4 2 23 23 C 1.53002 * 109.47291 * 239.99853 * 2 1 3 24 24 F 1.39898 * 109.46967 * 300.00196 * 23 2 1 25 25 F 1.39901 * 109.46698 * 59.99865 * 23 2 1 26 26 F 1.39896 * 109.47519 * 179.97438 * 23 2 1 27 27 H 1.09000 * 109.46789 * 186.22027 * 1 2 3 28 28 H 1.09005 * 109.46863 * 306.21680 * 1 2 3 29 29 H 1.08997 * 109.47349 * 66.21882 * 1 2 3 30 30 H 1.09004 * 110.66412 * 259.18573 * 7 6 4 31 31 H 1.09000 * 110.66410 * 22.12994 * 7 6 4 32 32 H 0.96994 * 119.99944 * 88.31883 * 10 8 7 33 33 H 0.97003 * 119.99576 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47235 * 298.57295 * 20 19 8 35 35 H 1.08998 * 109.47279 * 178.56972 * 20 19 8 36 36 H 1.08996 * 109.46484 * 58.56988 * 20 19 8 37 37 H 1.09004 * 109.47196 * 181.42920 * 21 19 8 38 38 H 1.08997 * 109.46979 * 301.42873 * 21 19 8 39 39 H 1.09004 * 109.46826 * 61.43368 * 21 19 8 40 40 H 1.09000 * 109.91032 * 86.05100 * 22 6 4 41 41 H 1.09000 * 109.91505 * 324.77671 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.1739 -1.9149 1.2199 6 7 2.3244 -0.0073 2.3426 7 6 2.7237 -0.5496 3.6617 8 6 3.8160 0.4425 4.1401 9 1 3.8961 0.4361 5.2270 10 7 5.1067 0.1303 3.5213 11 6 5.9836 -0.7101 4.1537 12 1 5.7235 -1.1431 5.1083 13 6 7.2069 -1.0056 3.5677 14 7 7.5236 -0.4783 2.4041 15 14 8.4034 -2.1514 4.4306 16 1 8.1428 -3.5504 4.0058 17 1 9.7946 -1.7761 4.0715 18 1 8.2240 -2.0389 5.9004 19 6 3.2834 1.8045 3.6383 20 6 4.4350 2.6653 3.1147 21 6 2.5449 2.5334 4.7627 22 6 2.3108 1.4596 2.4952 23 6 2.0400 -0.7213 -1.2492 24 9 1.5737 -2.0402 -1.2492 25 9 1.5736 -0.0618 -2.3915 26 9 3.4390 -0.7208 -1.2496 27 1 -0.3633 -1.0216 0.1114 28 1 -0.3633 0.6072 0.8292 29 1 -0.3634 0.4144 -0.9404 30 1 1.8782 -0.5496 4.3496 31 1 3.1323 -1.5546 3.5567 32 1 5.3401 0.5190 2.6639 33 1 8.3785 -0.6844 1.9948 34 1 5.1404 2.8589 3.9228 35 1 4.0414 3.6108 2.7416 36 1 4.9435 2.1393 2.3068 37 1 2.1539 3.4791 4.3873 38 1 1.7206 1.9144 5.1169 39 1 3.2342 2.7260 5.5849 40 1 1.3058 1.7972 2.7483 41 1 2.6421 1.9321 1.5705 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996134571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:26 Heat of formation + Delta-G solvation = -173.925449 kcal Electronic energy + Delta-G solvation = -27701.192571 eV Core-core repulsion = 23394.529794 eV Total energy + Delta-G solvation = -4306.662777 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.96283 -47.49838 -47.33512 -40.12813 -38.14445 -34.23794 -33.71768 -33.09900 -30.77157 -28.19041 -26.80368 -26.51695 -26.11617 -24.17831 -22.97142 -21.41262 -19.46980 -18.82138 -18.47391 -18.22717 -17.39260 -16.99206 -16.70444 -15.60524 -15.06898 -14.85414 -14.33656 -14.24810 -14.01408 -13.89709 -13.83441 -13.77488 -13.57239 -13.50883 -13.31664 -13.13855 -12.85418 -12.66000 -12.31176 -12.20861 -11.97514 -11.91615 -11.59029 -11.47578 -11.25952 -11.01391 -10.88347 -10.61026 -10.52106 -10.25062 -9.94936 -9.65759 -9.59724 -9.02735 -8.37809 -6.97952 -5.78655 -3.07862 2.45434 2.86348 3.13683 3.44235 3.49250 3.50884 3.75470 4.08283 4.09728 4.56034 4.61322 4.72106 4.76891 4.84256 5.06504 5.09676 5.27273 5.37837 5.47819 5.54084 5.56361 5.64401 5.75889 5.76321 5.85745 5.90266 6.15718 6.17040 6.22173 6.30889 6.35293 6.47681 6.63057 6.77249 6.90831 7.68317 7.76101 8.28284 8.39181 9.51176 10.05936 10.39933 11.43507 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.005496 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.190770 B = 5093.639722 C = 6275.186954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 H 0.129 0.871 4 C 0.538 3.462 5 O -0.519 6.519 6 N -0.600 5.600 7 C 0.076 3.924 8 C 0.176 3.824 9 H 0.073 0.927 10 N -0.709 5.709 11 C -0.246 4.246 12 H 0.071 0.929 13 C -0.008 4.008 14 N -0.928 5.928 15 Si 0.907 3.093 16 H -0.289 1.289 17 H -0.292 1.292 18 H -0.282 1.282 19 C -0.090 4.090 20 C -0.127 4.127 21 C -0.132 4.132 22 C 0.107 3.893 23 C 0.468 3.532 24 F -0.167 7.167 25 F -0.185 7.185 26 F -0.172 7.172 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.387 0.613 33 H 0.256 0.744 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.975 8.140 -2.530 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.183 4.183 3 H 0.147 0.853 4 C 0.324 3.676 5 O -0.395 6.395 6 N -0.332 5.332 7 C -0.049 4.049 8 C 0.063 3.937 9 H 0.091 0.909 10 N -0.350 5.350 11 C -0.377 4.377 12 H 0.089 0.911 13 C -0.204 4.204 14 N -0.575 5.575 15 Si 0.738 3.262 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.207 1.207 19 C -0.092 4.092 20 C -0.184 4.184 21 C -0.189 4.189 22 C -0.017 4.017 23 C 0.413 3.587 24 F -0.148 7.148 25 F -0.166 7.166 26 F -0.153 7.153 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.224 0.776 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.757 7.300 -2.545 17.552 hybrid contribution 0.895 -0.552 -0.181 1.067 sum -14.862 6.747 -2.726 16.548 Atomic orbital electron populations 1.21734 0.89234 1.04690 1.04320 1.22591 1.01250 1.02706 0.91732 0.85337 1.19149 0.78551 0.87100 0.82837 1.90808 1.52621 1.13625 1.82416 1.48491 1.66323 1.07363 1.11044 1.23636 0.97778 1.01848 0.81678 1.21356 0.86332 0.89319 0.96675 0.90890 1.42485 1.13085 1.55477 1.23909 1.19217 0.95966 1.20311 1.02245 0.91105 1.24736 0.98138 1.00545 0.97006 1.69653 1.23238 1.47565 1.17084 0.86207 0.80608 0.80772 0.78660 1.21675 1.21806 1.20726 1.21800 0.95294 0.97502 0.94566 1.21702 0.97124 0.97370 1.02228 1.21813 0.99877 0.99391 0.97850 1.22333 0.99211 0.80704 0.99424 1.19870 0.76150 0.78163 0.84470 1.93227 1.88216 1.36766 1.96592 1.93160 1.88618 1.80955 1.53897 1.93274 1.29033 1.96357 1.96636 0.90462 0.89979 0.90157 0.92341 0.89284 0.77639 0.93441 0.91729 0.93875 0.91484 0.92821 0.92720 0.92018 0.91607 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.94 37.16 0.33 -1.03 16 2 C -0.16 -2.10 2.43 -91.77 -0.22 -2.32 16 3 H 0.13 1.37 6.49 -51.93 -0.34 1.04 16 4 C 0.54 9.39 6.64 -10.98 -0.07 9.31 16 5 O -0.52 -11.35 15.53 5.55 0.09 -11.27 16 6 N -0.60 -9.72 3.29 -169.66 -0.56 -10.28 16 7 C 0.08 1.33 6.79 -2.04 -0.01 1.32 16 8 C 0.18 3.19 3.16 -65.96 -0.21 2.98 16 9 H 0.07 1.30 7.80 -51.93 -0.41 0.90 16 10 N -0.71 -16.84 4.60 -51.52 -0.24 -17.08 16 11 C -0.25 -6.66 9.96 -15.06 -0.15 -6.81 16 12 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 13 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 14 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 15 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 16 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 17 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.09 -1.25 0.94 -153.14 -0.14 -1.39 16 20 C -0.13 -1.91 7.62 37.16 0.28 -1.63 16 21 C -0.13 -1.42 8.21 37.16 0.31 -1.11 16 22 C 0.11 1.35 5.97 -2.98 -0.02 1.33 16 23 C 0.47 7.15 2.56 37.16 0.09 7.25 16 24 F -0.17 -2.83 15.51 2.25 0.03 -2.79 16 25 F -0.18 -2.43 16.69 2.25 0.04 -2.40 16 26 F -0.17 -3.17 17.03 2.25 0.04 -3.13 16 27 H 0.08 0.82 7.97 -51.93 -0.41 0.41 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.62 7.63 -51.93 -0.40 0.23 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.92 7.81 -51.93 -0.41 1.51 16 32 H 0.39 9.91 5.67 -40.82 -0.23 9.68 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 1.22 6.21 -51.93 -0.32 0.90 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.65 7.68 -51.93 -0.40 0.25 16 41 H 0.07 0.82 6.42 -51.93 -0.33 0.49 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -32.84 342.13 -5.40 -38.24 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.75 Total: 5.70 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 0.09 Total: 7.58 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.07 Total: -54.59 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 0.11 Total: -8.32 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.84 -5.40 -38.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996134571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.686 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds