Wall clock time and date at job start Tue Mar 31 2020 09:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46542 * 2 1 4 4 C 1.50692 * 109.47404 * 239.99585 * 2 1 3 5 5 O 1.21286 * 120.00088 * 261.01010 * 4 2 1 6 6 N 1.34779 * 119.99908 * 81.00368 * 4 2 1 7 7 C 1.46929 * 120.62769 * 183.90583 * 6 4 2 8 8 C 1.53192 * 108.89187 * 233.67603 * 7 6 4 9 9 C 1.53042 * 109.31448 * 305.29670 * 8 7 6 10 10 C 1.53039 * 109.53600 * 61.36760 * 9 8 7 11 11 H 1.08999 * 109.50549 * 58.61895 * 10 9 8 12 12 N 1.46505 * 109.49581 * 178.68593 * 10 9 8 13 13 C 1.46497 * 120.00119 * 59.99522 * 12 10 9 14 14 C 1.36943 * 119.99641 * 239.99506 * 12 10 9 15 15 H 1.07998 * 120.00101 * 21.34019 * 14 12 10 16 16 C 1.38811 * 119.99550 * 201.33560 * 14 12 10 17 17 N 1.31617 * 120.00551 * 15.95615 * 16 14 12 18 18 Si 1.86804 * 119.99560 * 195.95254 * 16 14 12 19 19 H 1.48500 * 109.47079 * 85.00280 * 18 16 14 20 20 H 1.48501 * 109.46745 * 205.00112 * 18 16 14 21 21 H 1.48500 * 109.47337 * 325.00208 * 18 16 14 22 22 C 1.47200 * 120.81672 * 4.05298 * 6 4 2 23 23 C 1.52998 * 109.46577 * 119.99480 * 2 1 3 24 24 F 1.39905 * 109.46641 * 180.02562 * 23 2 1 25 25 F 1.39904 * 109.47115 * 300.00197 * 23 2 1 26 26 F 1.39898 * 109.47594 * 60.00467 * 23 2 1 27 27 H 1.09005 * 109.46838 * 63.76681 * 1 2 3 28 28 H 1.09004 * 109.46744 * 183.76105 * 1 2 3 29 29 H 1.08993 * 109.47265 * 303.76558 * 1 2 3 30 30 H 1.08996 * 109.58632 * 113.82424 * 7 6 4 31 31 H 1.08996 * 109.59253 * 353.53462 * 7 6 4 32 32 H 1.09009 * 109.49713 * 65.24451 * 8 7 6 33 33 H 1.09004 * 109.50102 * 185.34428 * 8 7 6 34 34 H 1.08999 * 109.45962 * 181.38262 * 9 8 7 35 35 H 1.08996 * 109.46238 * 301.34268 * 9 8 7 36 36 H 1.09004 * 109.46960 * 95.86914 * 13 12 10 37 37 H 1.09000 * 109.46933 * 215.86973 * 13 12 10 38 38 H 1.08996 * 109.47435 * 335.86707 * 13 12 10 39 39 H 0.96996 * 120.00040 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.53209 * 6.52629 * 22 6 4 41 41 H 1.09007 * 109.67623 * 246.23129 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 8 2.3894 -1.8674 -1.1593 6 7 2.0850 -0.0602 -2.4097 7 6 2.4912 -0.7629 -3.6345 8 6 3.6404 0.0085 -4.2910 9 6 3.2123 1.4605 -4.5155 10 6 2.8983 2.1156 -3.1685 11 1 3.7792 2.0712 -2.5281 12 7 2.5188 3.5145 -3.3818 13 6 1.3568 3.8398 -4.2126 14 6 3.2503 4.5180 -2.8045 15 1 4.2680 4.3341 -2.4934 16 6 2.6836 5.7715 -2.6192 17 7 1.3784 5.9219 -2.6976 18 14 3.7735 7.2451 -2.2585 19 1 4.2722 7.8163 -3.5353 20 1 2.9895 8.2737 -1.5288 21 1 4.9252 6.8167 -1.4246 22 6 1.7406 1.3681 -2.4993 23 6 2.0399 -0.7212 1.2493 24 9 3.4390 -0.7206 1.2496 25 9 1.5735 -0.0615 2.3915 26 9 1.5737 -2.0402 1.2495 27 1 -0.3633 0.4543 -0.9219 28 1 -0.3633 -1.0255 0.0674 29 1 -0.3633 0.5711 0.8543 30 1 1.6472 -0.8162 -4.3221 31 1 2.8232 -1.7706 -3.3847 32 1 4.5143 -0.0166 -3.6397 33 1 3.8865 -0.4505 -5.2486 34 1 4.0194 2.0055 -5.0049 35 1 2.3239 1.4837 -5.1465 36 1 0.4843 3.9857 -3.5758 37 1 1.5550 4.7537 -4.7725 38 1 1.1667 3.0219 -4.9076 39 1 0.9825 6.7979 -2.5685 40 1 1.5780 1.7673 -1.4982 41 1 0.8347 1.4907 -3.0930 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027524628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:50 Heat of formation + Delta-G solvation = -167.922479 kcal Electronic energy + Delta-G solvation = -27543.779093 eV Core-core repulsion = 23237.376624 eV Total energy + Delta-G solvation = -4306.402469 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.02319 -47.54186 -47.42831 -40.25217 -37.67572 -35.05545 -34.29947 -32.28923 -31.38332 -28.84182 -26.53907 -26.13032 -25.52948 -23.76158 -23.13630 -21.39954 -19.88172 -19.03567 -18.56842 -18.28776 -17.28757 -16.96167 -16.68399 -15.62879 -15.25947 -14.91777 -14.45707 -14.33271 -14.19755 -13.96558 -13.89425 -13.75533 -13.65884 -13.58861 -13.44631 -13.30658 -12.86004 -12.73204 -12.43103 -12.36625 -12.08937 -11.90124 -11.44638 -11.25289 -11.08022 -10.88046 -10.63365 -10.57603 -10.46795 -10.37491 -9.94284 -9.89736 -9.71863 -8.71164 -8.48824 -6.91375 -5.84769 -3.30334 2.41236 2.65572 3.04106 3.32526 3.39840 3.39908 3.71341 3.99706 4.06385 4.39818 4.57030 4.79491 4.88481 5.07357 5.15805 5.16988 5.31694 5.38883 5.44128 5.48676 5.56902 5.59763 5.80511 5.83258 5.95712 5.99991 6.08093 6.23288 6.28529 6.55351 6.64024 6.71045 6.81774 7.24441 7.39699 7.57824 7.70887 8.07214 8.26411 9.10493 9.73342 10.20877 11.19386 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.004868 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.456970 B = 5750.987438 C = 6807.138536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.167 4.167 3 H 0.141 0.859 4 C 0.525 3.475 5 O -0.536 6.536 6 N -0.597 5.597 7 C 0.113 3.887 8 C -0.131 4.131 9 C -0.134 4.134 10 C 0.167 3.833 11 H 0.067 0.933 12 N -0.591 5.591 13 C 0.158 3.842 14 C -0.261 4.261 15 H 0.070 0.930 16 C 0.006 3.994 17 N -0.904 5.904 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.085 3.915 23 C 0.472 3.528 24 F -0.178 7.178 25 F -0.181 7.181 26 F -0.170 7.170 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.032 0.968 37 H 0.040 0.960 38 H 0.002 0.998 39 H 0.254 0.746 40 H 0.084 0.916 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 -11.760 1.587 12.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.189 4.189 3 H 0.159 0.841 4 C 0.311 3.689 5 O -0.413 6.413 6 N -0.330 5.330 7 C -0.009 4.009 8 C -0.169 4.169 9 C -0.173 4.173 10 C 0.058 3.942 11 H 0.086 0.914 12 N -0.312 5.312 13 C 0.014 3.986 14 C -0.390 4.390 15 H 0.087 0.913 16 C -0.193 4.193 17 N -0.548 5.548 18 Si 0.734 3.266 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.039 4.039 23 C 0.418 3.582 24 F -0.160 7.160 25 F -0.163 7.163 26 F -0.151 7.151 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.783 -12.191 1.657 12.432 hybrid contribution 0.536 1.039 0.385 1.231 sum -1.247 -11.153 2.042 11.407 Atomic orbital electron populations 1.21781 0.89000 1.04305 1.05189 1.22688 1.01680 1.03387 0.91151 0.84097 1.19688 0.78448 0.86598 0.84136 1.90753 1.48761 1.16766 1.85066 1.48240 1.65885 1.11658 1.07186 1.21622 0.97458 0.96770 0.85035 1.21904 0.97968 0.96610 1.00454 1.22091 1.01505 0.93951 0.99761 1.20639 0.94928 0.84914 0.93752 0.91444 1.43955 1.32835 0.98998 1.55432 1.20819 0.89824 0.95832 0.92163 1.19217 0.94109 0.90000 1.35672 0.91269 1.24967 0.95407 0.98758 1.00156 1.70063 1.08506 1.22669 1.53560 0.86290 0.79763 0.82661 0.77930 1.21389 1.21707 1.20487 1.22927 1.00692 0.77322 1.02918 1.19840 0.75728 0.77909 0.84769 1.93203 1.29628 1.96404 1.96722 1.93183 1.88534 1.80876 1.53680 1.93203 1.88221 1.37028 1.96655 0.89543 0.90750 0.89842 0.91501 0.89303 0.91672 0.91098 0.91533 0.92167 0.94935 0.94076 0.97935 0.93604 0.89794 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.84 37.16 0.33 -1.26 16 2 C -0.17 -2.21 1.87 -91.77 -0.17 -2.39 16 3 H 0.14 1.81 6.31 -51.93 -0.33 1.49 16 4 C 0.53 8.03 6.59 -10.99 -0.07 7.96 16 5 O -0.54 -9.57 14.51 5.55 0.08 -9.49 16 6 N -0.60 -8.64 2.98 -172.55 -0.52 -9.15 16 7 C 0.11 1.47 6.43 -3.71 -0.02 1.45 16 8 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 9 C -0.13 -2.05 5.13 -26.69 -0.14 -2.18 16 10 C 0.17 3.01 2.74 -67.81 -0.19 2.83 16 11 H 0.07 1.30 7.86 -51.93 -0.41 0.89 16 12 N -0.59 -13.22 2.82 -173.35 -0.49 -13.71 16 13 C 0.16 3.48 7.91 59.85 0.47 3.96 16 14 C -0.26 -6.63 9.59 -15.06 -0.14 -6.77 16 15 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 16 C 0.01 0.16 5.05 -17.43 -0.09 0.07 16 17 N -0.90 -24.58 10.78 55.49 0.60 -23.98 16 18 Si 0.90 20.86 29.58 -169.99 -5.03 15.83 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.09 1.34 5.18 -3.56 -0.02 1.32 16 23 C 0.47 6.73 2.46 37.16 0.09 6.82 16 24 F -0.18 -2.81 16.90 2.25 0.04 -2.77 16 25 F -0.18 -2.43 16.87 2.25 0.04 -2.39 16 26 F -0.17 -2.57 15.41 2.25 0.03 -2.54 16 27 H 0.09 0.91 7.65 -51.93 -0.40 0.51 16 28 H 0.07 0.80 7.70 -51.93 -0.40 0.40 16 29 H 0.08 0.80 7.91 -51.93 -0.41 0.39 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.19 7.00 -51.93 -0.36 0.83 16 32 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.91 6.72 -51.93 -0.35 0.56 16 36 H 0.03 0.77 7.33 -51.93 -0.38 0.39 16 37 H 0.04 1.00 7.36 -51.93 -0.38 0.62 16 38 H 0.00 0.04 6.47 -51.93 -0.34 -0.29 16 39 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.08 1.33 5.44 -51.93 -0.28 1.05 16 41 H 0.07 1.11 7.51 -51.93 -0.39 0.72 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -28.69 332.97 -6.00 -34.69 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.66 Total: -1.48 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -0.11 Total: 9.97 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.41 Total: -46.85 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.11 Total: -7.70 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.69 -6.00 -34.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027524628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.236 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds