Wall clock time and date at job start Tue Mar 31 2020 09:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46756 * 2 1 4 4 C 1.50693 * 109.47363 * 119.99801 * 2 1 3 5 5 O 1.21281 * 120.00017 * 112.29860 * 4 2 1 6 6 N 1.34777 * 120.00395 * 292.29724 * 4 2 1 7 7 C 1.46918 * 120.63418 * 176.28985 * 6 4 2 8 8 C 1.53198 * 108.77608 * 126.41690 * 7 6 4 9 9 C 1.53040 * 109.31168 * 54.63652 * 8 7 6 10 10 C 1.53042 * 109.53762 * 298.63677 * 9 8 7 11 11 H 1.09003 * 109.49548 * 301.38258 * 10 9 8 12 12 N 1.46497 * 109.49909 * 181.32058 * 10 9 8 13 13 C 1.46504 * 119.99469 * 299.99837 * 12 10 9 14 14 C 1.36929 * 120.00325 * 120.00032 * 12 10 9 15 15 H 1.07996 * 120.00214 * 340.92862 * 14 12 10 16 16 C 1.38815 * 120.00013 * 161.20874 * 14 12 10 17 17 N 1.31622 * 119.99856 * 339.51761 * 16 14 12 18 18 Si 1.86800 * 119.99970 * 159.52022 * 16 14 12 19 19 H 1.48500 * 109.46989 * 89.99937 * 18 16 14 20 20 H 1.48502 * 109.47136 * 209.99540 * 18 16 14 21 21 H 1.48497 * 109.47389 * 329.99716 * 18 16 14 22 22 C 1.46927 * 120.62519 * 356.32007 * 6 4 2 23 23 C 1.53000 * 109.47129 * 240.00190 * 2 1 3 24 24 F 1.39895 * 109.47090 * 299.99528 * 23 2 1 25 25 F 1.39899 * 109.47236 * 59.99367 * 23 2 1 26 26 F 1.39900 * 109.47131 * 179.97438 * 23 2 1 27 27 H 1.09002 * 109.46601 * 185.23965 * 1 2 3 28 28 H 1.08996 * 109.47327 * 305.23181 * 1 2 3 29 29 H 1.09000 * 109.47494 * 65.24055 * 1 2 3 30 30 H 1.09007 * 109.58641 * 6.62872 * 7 6 4 31 31 H 1.09001 * 109.71224 * 246.27367 * 7 6 4 32 32 H 1.09009 * 109.49442 * 294.68494 * 8 7 6 33 33 H 1.09004 * 109.52441 * 174.60813 * 8 7 6 34 34 H 1.08999 * 109.45969 * 178.61722 * 9 8 7 35 35 H 1.08996 * 109.45051 * 58.64839 * 9 8 7 36 36 H 1.09001 * 109.47097 * 272.09213 * 13 12 10 37 37 H 1.09001 * 109.47556 * 32.09343 * 13 12 10 38 38 H 1.08997 * 109.46988 * 152.09413 * 13 12 10 39 39 H 0.96998 * 119.99568 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.58637 * 113.79848 * 22 6 4 41 41 H 1.08993 * 109.58985 * 353.36436 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.6103 -1.7713 1.1246 6 7 1.8396 -0.1666 2.4485 7 6 2.2509 -0.8846 3.6624 8 6 3.1544 0.0310 4.4946 9 6 2.4287 1.3518 4.7610 10 6 2.1284 2.0480 3.4316 11 1 3.0605 2.2251 2.8950 12 7 1.4619 3.3269 3.6890 13 6 0.1813 3.3554 4.4002 14 6 2.0357 4.4956 3.2649 15 1 3.0885 4.5248 3.0264 16 6 1.2653 5.6444 3.1472 17 7 -0.0435 5.5512 3.0431 18 14 2.0860 7.3224 3.1365 19 1 2.4190 7.7016 1.7398 20 1 1.1611 8.3295 3.7157 21 1 3.3303 7.2700 3.9452 22 6 1.2133 1.1552 2.5875 23 6 2.0400 -0.7212 -1.2493 24 9 1.5738 -2.0402 -1.2492 25 9 1.5736 -0.0618 -2.3915 26 9 3.4390 -0.7207 -1.2496 27 1 -0.3632 -1.0234 0.0939 28 1 -0.3634 0.5928 0.8394 29 1 -0.3634 0.4304 -0.9332 30 1 2.7988 -1.7856 3.3862 31 1 1.3706 -1.1565 4.2449 32 1 4.0768 0.2266 3.9476 33 1 3.3892 -0.4528 5.4427 34 1 3.0596 1.9956 5.3737 35 1 1.4944 1.1531 5.2860 36 1 -0.6339 3.2453 3.6851 37 1 0.1468 2.5371 5.1194 38 1 0.0783 4.3050 4.9252 39 1 -0.5818 6.3539 2.9604 40 1 0.2471 1.0517 3.0812 41 1 1.0766 1.6003 1.6020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027524629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:54 Heat of formation + Delta-G solvation = -167.107678 kcal Electronic energy + Delta-G solvation = -27536.478698 eV Core-core repulsion = 23230.111562 eV Total energy + Delta-G solvation = -4306.367137 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.02548 -47.54161 -47.43128 -40.29144 -37.67480 -35.07625 -34.38799 -32.26974 -31.37423 -28.84678 -26.54104 -26.13819 -25.53763 -23.72732 -23.13513 -21.44921 -19.88254 -19.07354 -18.56663 -18.26967 -17.30777 -16.91750 -16.65115 -15.72832 -15.20492 -14.94239 -14.46566 -14.35048 -14.21826 -13.97253 -13.89283 -13.77883 -13.64303 -13.59637 -13.46042 -13.30088 -12.88610 -12.74312 -12.42988 -12.22097 -12.10277 -11.91635 -11.46770 -11.23427 -11.16801 -10.87845 -10.62046 -10.54552 -10.47194 -10.39480 -9.94749 -9.91857 -9.74294 -8.69157 -8.46576 -6.94905 -5.89623 -3.27509 2.48802 2.58142 3.05088 3.31166 3.39415 3.41620 3.70650 3.99982 4.05883 4.39659 4.57191 4.80497 4.91317 5.06508 5.14747 5.16469 5.29225 5.40729 5.44874 5.50055 5.55339 5.59171 5.80230 5.83472 5.97310 6.00709 6.07334 6.23002 6.27700 6.56019 6.64415 6.71051 6.80601 7.21761 7.39508 7.50334 7.70138 8.06837 8.24221 9.08280 9.72568 10.19688 11.17302 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.015117 B = 0.004722 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.818609 B = 5927.874442 C = 6949.118687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.164 4.164 3 H 0.141 0.859 4 C 0.526 3.474 5 O -0.537 6.537 6 N -0.596 5.596 7 C 0.114 3.886 8 C -0.130 4.130 9 C -0.134 4.134 10 C 0.167 3.833 11 H 0.067 0.933 12 N -0.590 5.590 13 C 0.157 3.843 14 C -0.261 4.261 15 H 0.070 0.930 16 C 0.005 3.995 17 N -0.901 5.901 18 Si 0.900 3.100 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.084 3.916 23 C 0.474 3.526 24 F -0.172 7.172 25 F -0.182 7.182 26 F -0.176 7.176 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.001 0.999 38 H 0.055 0.945 39 H 0.254 0.746 40 H 0.070 0.930 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 -11.488 -2.344 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 H 0.159 0.841 4 C 0.312 3.688 5 O -0.414 6.414 6 N -0.329 5.329 7 C -0.009 4.009 8 C -0.169 4.169 9 C -0.173 4.173 10 C 0.057 3.943 11 H 0.085 0.915 12 N -0.311 5.311 13 C 0.013 3.987 14 C -0.390 4.390 15 H 0.088 0.912 16 C -0.193 4.193 17 N -0.545 5.545 18 Si 0.729 3.271 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.205 1.205 22 C -0.040 4.040 23 C 0.419 3.581 24 F -0.154 7.154 25 F -0.163 7.163 26 F -0.158 7.158 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.019 0.981 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.879 -11.891 -2.414 12.165 hybrid contribution 0.316 1.090 -0.251 1.162 sum 1.195 -10.801 -2.665 11.189 Atomic orbital electron populations 1.21915 0.89087 1.04421 1.05497 1.22635 1.01634 1.03283 0.91098 0.84104 1.19699 0.79553 0.85348 0.84249 1.90753 1.42155 1.22435 1.86076 1.48133 1.59889 1.19813 1.05047 1.21623 0.98747 0.95650 0.84833 1.21904 0.98885 0.96600 0.99538 1.22076 1.00197 0.95220 0.99815 1.20645 0.94986 0.85843 0.92791 0.91468 1.43977 1.22914 1.00288 1.63957 1.20801 0.86635 0.97935 0.93377 1.19195 0.92544 0.86308 1.40971 0.91246 1.24877 0.95400 0.98518 1.00551 1.70110 1.03948 1.27758 1.52687 0.86343 0.78700 0.84201 0.77829 1.21401 1.21519 1.20511 1.22909 0.97780 0.80625 1.02721 1.19801 0.75793 0.77792 0.84698 1.93190 1.88282 1.37216 1.96683 1.93179 1.88553 1.80882 1.53707 1.93202 1.29483 1.96375 1.96700 0.90889 0.88938 0.89930 0.89286 0.91482 0.91689 0.91107 0.91520 0.92161 0.96246 0.98077 0.92645 0.93594 0.91134 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.61 37.16 0.32 -1.39 16 2 C -0.16 -2.17 1.85 -91.77 -0.17 -2.34 16 3 H 0.14 1.77 7.11 -51.93 -0.37 1.40 16 4 C 0.53 8.01 6.75 -10.99 -0.07 7.94 16 5 O -0.54 -9.58 14.28 5.56 0.08 -9.50 16 6 N -0.60 -8.57 2.97 -172.77 -0.51 -9.09 16 7 C 0.11 1.47 6.44 -3.71 -0.02 1.44 16 8 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 9 C -0.13 -2.03 5.11 -26.69 -0.14 -2.17 16 10 C 0.17 2.98 2.75 -67.81 -0.19 2.80 16 11 H 0.07 1.27 7.84 -51.93 -0.41 0.87 16 12 N -0.59 -13.10 2.82 -173.34 -0.49 -13.59 16 13 C 0.16 3.44 8.00 59.85 0.48 3.92 16 14 C -0.26 -6.59 9.60 -15.06 -0.14 -6.74 16 15 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 16 C 0.01 0.14 4.89 -17.43 -0.09 0.06 16 17 N -0.90 -24.39 10.97 55.49 0.61 -23.78 16 18 Si 0.90 20.68 29.60 -169.99 -5.03 15.65 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 C 0.08 1.30 4.46 -3.71 -0.02 1.28 16 23 C 0.47 6.69 2.43 37.16 0.09 6.78 16 24 F -0.17 -2.59 15.80 2.25 0.04 -2.56 16 25 F -0.18 -2.41 16.71 2.25 0.04 -2.37 16 26 F -0.18 -2.75 16.59 2.25 0.04 -2.71 16 27 H 0.07 0.80 7.95 -51.93 -0.41 0.38 16 28 H 0.09 1.05 6.02 -51.93 -0.31 0.74 16 29 H 0.08 0.83 7.66 -51.93 -0.40 0.43 16 30 H 0.09 1.19 7.00 -51.93 -0.36 0.83 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.91 6.73 -51.93 -0.35 0.56 16 36 H 0.02 0.45 7.82 -51.93 -0.41 0.04 16 37 H 0.00 0.02 6.46 -51.93 -0.34 -0.32 16 38 H 0.05 1.36 6.76 -51.93 -0.35 1.01 16 39 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.07 1.10 7.51 -51.93 -0.39 0.71 16 41 H 0.09 1.35 4.90 -51.93 -0.25 1.10 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -28.52 330.50 -5.95 -34.47 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.59 Total: -1.27 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.11 Total: 9.76 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.39 Total: -46.46 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 0.11 Total: -7.64 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.52 -5.95 -34.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027524629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.634 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds