Wall clock time and date at job start Tue Mar 31 2020 09:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46756 * 2 1 4 4 C 1.50693 * 109.47363 * 119.99801 * 2 1 3 5 5 O 1.21281 * 120.00017 * 112.29860 * 4 2 1 6 6 N 1.34777 * 120.00395 * 292.29724 * 4 2 1 7 7 C 1.46918 * 120.63418 * 176.28985 * 6 4 2 8 8 C 1.53198 * 108.77608 * 126.41690 * 7 6 4 9 9 C 1.53040 * 109.31168 * 54.63652 * 8 7 6 10 10 C 1.53042 * 109.53762 * 298.63677 * 9 8 7 11 11 H 1.09003 * 109.49548 * 301.38258 * 10 9 8 12 12 N 1.46497 * 109.49909 * 181.32058 * 10 9 8 13 13 C 1.46504 * 119.99469 * 299.99837 * 12 10 9 14 14 C 1.36929 * 120.00325 * 120.00032 * 12 10 9 15 15 H 1.07996 * 120.00214 * 340.92862 * 14 12 10 16 16 C 1.38815 * 120.00013 * 161.20874 * 14 12 10 17 17 N 1.31622 * 119.99856 * 339.51761 * 16 14 12 18 18 Si 1.86800 * 119.99970 * 159.52022 * 16 14 12 19 19 H 1.48500 * 109.46989 * 89.99937 * 18 16 14 20 20 H 1.48502 * 109.47136 * 209.99540 * 18 16 14 21 21 H 1.48497 * 109.47389 * 329.99716 * 18 16 14 22 22 C 1.46927 * 120.62519 * 356.32007 * 6 4 2 23 23 C 1.53000 * 109.47129 * 240.00190 * 2 1 3 24 24 F 1.39895 * 109.47090 * 299.99528 * 23 2 1 25 25 F 1.39899 * 109.47236 * 59.99367 * 23 2 1 26 26 F 1.39900 * 109.47131 * 179.97438 * 23 2 1 27 27 H 1.09002 * 109.46601 * 185.23965 * 1 2 3 28 28 H 1.08996 * 109.47327 * 305.23181 * 1 2 3 29 29 H 1.09000 * 109.47494 * 65.24055 * 1 2 3 30 30 H 1.09007 * 109.58641 * 6.62872 * 7 6 4 31 31 H 1.09001 * 109.71224 * 246.27367 * 7 6 4 32 32 H 1.09009 * 109.49442 * 294.68494 * 8 7 6 33 33 H 1.09004 * 109.52441 * 174.60813 * 8 7 6 34 34 H 1.08999 * 109.45969 * 178.61722 * 9 8 7 35 35 H 1.08996 * 109.45051 * 58.64839 * 9 8 7 36 36 H 1.09001 * 109.47097 * 272.09213 * 13 12 10 37 37 H 1.09001 * 109.47556 * 32.09343 * 13 12 10 38 38 H 1.08997 * 109.46988 * 152.09413 * 13 12 10 39 39 H 0.96998 * 119.99568 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.58637 * 113.79848 * 22 6 4 41 41 H 1.08993 * 109.58985 * 353.36436 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.6103 -1.7713 1.1246 6 7 1.8396 -0.1666 2.4485 7 6 2.2509 -0.8846 3.6624 8 6 3.1544 0.0310 4.4946 9 6 2.4287 1.3518 4.7610 10 6 2.1284 2.0480 3.4316 11 1 3.0605 2.2251 2.8950 12 7 1.4619 3.3269 3.6890 13 6 0.1813 3.3554 4.4002 14 6 2.0357 4.4956 3.2649 15 1 3.0885 4.5248 3.0264 16 6 1.2653 5.6444 3.1472 17 7 -0.0435 5.5512 3.0431 18 14 2.0860 7.3224 3.1365 19 1 2.4190 7.7016 1.7398 20 1 1.1611 8.3295 3.7157 21 1 3.3303 7.2700 3.9452 22 6 1.2133 1.1552 2.5875 23 6 2.0400 -0.7212 -1.2493 24 9 1.5738 -2.0402 -1.2492 25 9 1.5736 -0.0618 -2.3915 26 9 3.4390 -0.7207 -1.2496 27 1 -0.3632 -1.0234 0.0939 28 1 -0.3634 0.5928 0.8394 29 1 -0.3634 0.4304 -0.9332 30 1 2.7988 -1.7856 3.3862 31 1 1.3706 -1.1565 4.2449 32 1 4.0768 0.2266 3.9476 33 1 3.3892 -0.4528 5.4427 34 1 3.0596 1.9956 5.3737 35 1 1.4944 1.1531 5.2860 36 1 -0.6339 3.2453 3.6851 37 1 0.1468 2.5371 5.1194 38 1 0.0783 4.3050 4.9252 39 1 -0.5818 6.3539 2.9604 40 1 0.2471 1.0517 3.0812 41 1 1.0766 1.6003 1.6020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027524629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:53 Heat of formation + Delta-G solvation = -182.493838 kcal Electronic energy + Delta-G solvation = -27537.145892 eV Core-core repulsion = 23230.111562 eV Total energy + Delta-G solvation = -4307.034331 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.16528 -48.66917 -48.60035 -41.50964 -39.04748 -36.66287 -35.48594 -33.75708 -32.80276 -30.35922 -27.98625 -27.55809 -26.73191 -25.27239 -24.34357 -22.73292 -21.24175 -20.29751 -19.71628 -19.43096 -18.75562 -18.37978 -17.93478 -17.06860 -16.65590 -16.31350 -15.74330 -15.58939 -15.53148 -15.28113 -15.20360 -15.03945 -14.82460 -14.79261 -14.71788 -14.40277 -14.34736 -14.09869 -13.71212 -13.48621 -13.34835 -13.02464 -12.92190 -12.78589 -12.54406 -12.42950 -12.17337 -12.13550 -12.03801 -11.76928 -11.55994 -11.44237 -10.98816 -10.53966 -9.77532 -8.76802 -7.84614 -5.22557 1.30065 1.45153 1.47886 1.52069 1.59145 1.90726 2.52541 2.60010 2.85810 2.95658 3.30513 3.42659 3.70455 3.77434 3.84939 3.97436 4.03617 4.14177 4.24982 4.39388 4.53432 4.60116 4.60550 4.65400 4.80689 4.86684 4.99431 5.02983 5.03751 5.12529 5.31031 5.41420 5.45394 5.56172 5.65467 5.75551 6.17502 6.34774 6.87503 7.17226 7.90033 8.31440 9.20077 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.015117 B = 0.004722 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.818609 B = 5927.874442 C = 6949.118687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.162 4.162 3 H 0.147 0.853 4 C 0.524 3.476 5 O -0.563 6.563 6 N -0.592 5.592 7 C 0.110 3.890 8 C -0.120 4.120 9 C -0.124 4.124 10 C 0.162 3.838 11 H 0.052 0.948 12 N -0.602 5.602 13 C 0.172 3.828 14 C -0.262 4.262 15 H 0.067 0.933 16 C -0.042 4.042 17 N -0.927 5.927 18 Si 0.953 3.047 19 H -0.288 1.288 20 H -0.295 1.295 21 H -0.276 1.276 22 C 0.098 3.902 23 C 0.473 3.527 24 F -0.178 7.178 25 F -0.176 7.176 26 F -0.187 7.187 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.003 0.997 37 H 0.033 0.967 38 H 0.023 0.977 39 H 0.249 0.751 40 H 0.076 0.924 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 -12.361 -1.874 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 H 0.165 0.835 4 C 0.311 3.689 5 O -0.443 6.443 6 N -0.324 5.324 7 C -0.011 4.011 8 C -0.158 4.158 9 C -0.164 4.164 10 C 0.054 3.946 11 H 0.071 0.929 12 N -0.325 5.325 13 C 0.027 3.973 14 C -0.392 4.392 15 H 0.085 0.915 16 C -0.238 4.238 17 N -0.573 5.573 18 Si 0.783 3.217 19 H -0.215 1.215 20 H -0.221 1.221 21 H -0.201 1.201 22 C -0.026 4.026 23 C 0.419 3.581 24 F -0.159 7.159 25 F -0.157 7.157 26 F -0.168 7.168 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.021 0.979 37 H 0.052 0.948 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.019 -12.791 -1.933 12.976 hybrid contribution 0.336 1.292 -0.392 1.391 sum 1.355 -11.499 -2.325 11.810 Atomic orbital electron populations 1.21931 0.87429 1.04845 1.06249 1.22673 1.02926 1.03046 0.89780 0.83498 1.19957 0.79010 0.85055 0.84831 1.90743 1.43401 1.23695 1.86459 1.48110 1.59482 1.19267 1.05531 1.21794 0.99647 0.95362 0.84331 1.21834 0.97961 0.95205 1.00823 1.21938 1.00639 0.96006 0.97791 1.20793 0.94335 0.84853 0.94602 0.92942 1.44099 1.23041 1.01134 1.64212 1.20562 0.86115 0.97406 0.93211 1.19435 0.92547 0.87673 1.39588 0.91543 1.25457 0.95902 1.01066 1.01425 1.70219 1.04821 1.27852 1.54439 0.85494 0.77765 0.80965 0.77513 1.21452 1.22126 1.20105 1.22575 0.97176 0.80703 1.02148 1.19917 0.75299 0.77669 0.85232 1.93177 1.88276 1.37740 1.96743 1.93190 1.88393 1.80686 1.53461 1.93179 1.30471 1.96415 1.96783 0.90469 0.88930 0.88577 0.89455 0.89477 0.92546 0.88229 0.92598 0.91451 0.97851 0.94838 0.95813 0.94216 0.90534 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.61 71.98 0.62 -2.43 16 2 C -0.16 -4.06 1.85 -11.54 -0.02 -4.09 16 3 H 0.15 3.50 7.11 -2.39 -0.02 3.49 16 4 C 0.52 15.22 6.75 87.65 0.59 15.81 16 5 O -0.56 -19.44 14.28 -3.03 -0.04 -19.48 16 6 N -0.59 -15.84 2.97 -818.91 -2.43 -18.28 16 7 C 0.11 2.54 6.44 86.37 0.56 3.09 16 8 C -0.12 -2.69 6.08 30.67 0.19 -2.50 16 9 C -0.12 -3.50 5.11 30.62 0.16 -3.35 16 10 C 0.16 5.58 2.75 45.07 0.12 5.70 16 11 H 0.05 1.95 7.84 -2.39 -0.02 1.93 16 12 N -0.60 -26.36 2.82 -702.33 -1.98 -28.34 16 13 C 0.17 7.41 8.00 127.77 1.02 8.43 16 14 C -0.26 -13.20 9.60 84.04 0.81 -12.39 16 15 H 0.07 3.32 7.83 -2.91 -0.02 3.29 16 16 C -0.04 -2.21 4.89 84.86 0.42 -1.79 16 17 N -0.93 -50.66 10.97 21.65 0.24 -50.42 16 18 Si 0.95 42.69 29.60 68.60 2.03 44.72 16 19 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 22 C 0.10 2.87 4.46 86.36 0.38 3.25 16 23 C 0.47 12.86 2.43 71.98 0.17 13.04 16 24 F -0.18 -5.17 15.80 44.97 0.71 -4.46 16 25 F -0.18 -4.43 16.71 44.97 0.75 -3.68 16 26 F -0.19 -5.72 16.59 44.97 0.75 -4.97 16 27 H 0.08 1.54 7.95 -2.39 -0.02 1.52 16 28 H 0.09 1.93 6.02 -2.39 -0.01 1.92 16 29 H 0.10 1.73 7.66 -2.39 -0.02 1.72 16 30 H 0.09 2.12 7.00 -2.38 -0.02 2.11 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.82 6.73 -2.39 -0.02 1.80 16 36 H 0.00 0.15 7.82 -2.39 -0.02 0.13 16 37 H 0.03 1.20 6.46 -2.39 -0.02 1.18 16 38 H 0.02 1.15 6.76 -2.39 -0.02 1.13 16 39 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 40 H 0.08 2.20 7.51 -2.39 -0.02 2.18 16 41 H 0.08 2.50 4.90 -2.39 -0.01 2.49 16 Total: -1.00 -60.34 330.50 6.09 -54.26 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.05 Total: 7.89 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 5.02 Total: 22.77 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -4.18 Total: -97.03 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.04 Total: -19.48 kcal Atomic # 9 Polarization: -15.32 SS G_CDS: 2.21 Total: -13.11 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -60.34 6.09 -54.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027524629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.238 kcal (2) G-P(sol) polarization free energy of solvation -60.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds