Wall clock time and date at job start Tue Mar 31 2020 09:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46692 * 2 1 4 4 C 1.50698 * 109.47157 * 120.00007 * 2 1 3 5 5 O 1.21276 * 120.00052 * 113.00654 * 4 2 1 6 6 N 1.34776 * 119.99978 * 293.01171 * 4 2 1 7 7 C 1.46933 * 120.63000 * 356.65085 * 6 4 2 8 8 C 1.53194 * 108.77540 * 233.63085 * 7 6 4 9 9 C 1.53034 * 109.31463 * 305.36885 * 8 7 6 10 10 C 1.53045 * 109.54076 * 61.36054 * 9 8 7 11 11 H 1.08995 * 109.49362 * 58.58986 * 10 9 8 12 12 N 1.46503 * 109.49819 * 178.68375 * 10 9 8 13 13 C 1.46501 * 119.99771 * 59.84009 * 12 10 9 14 14 C 1.36937 * 120.00204 * 239.84291 * 12 10 9 15 15 H 1.08005 * 119.99653 * 7.80851 * 14 12 10 16 16 C 1.38812 * 119.99873 * 187.80921 * 14 12 10 17 17 N 1.31619 * 120.00020 * 24.89171 * 16 14 12 18 18 Si 1.86804 * 119.99641 * 204.88850 * 16 14 12 19 19 H 1.48494 * 109.46821 * 95.00177 * 18 16 14 20 20 H 1.48498 * 109.46956 * 215.00061 * 18 16 14 21 21 H 1.48498 * 109.47383 * 334.99946 * 18 16 14 22 22 C 1.46930 * 120.63136 * 176.67555 * 6 4 2 23 23 C 1.53001 * 109.46950 * 239.99956 * 2 1 3 24 24 F 1.39896 * 109.47377 * 299.99484 * 23 2 1 25 25 F 1.39897 * 109.47252 * 60.00413 * 23 2 1 26 26 F 1.39904 * 109.46798 * 180.02562 * 23 2 1 27 27 H 1.09002 * 109.46872 * 185.29022 * 1 2 3 28 28 H 1.08993 * 109.47417 * 305.29251 * 1 2 3 29 29 H 1.09004 * 109.47077 * 65.29649 * 1 2 3 30 30 H 1.09000 * 109.58739 * 353.42051 * 7 6 4 31 31 H 1.08995 * 109.58365 * 113.70631 * 7 6 4 32 32 H 1.09008 * 109.49464 * 65.31904 * 8 7 6 33 33 H 1.08990 * 109.49595 * 185.41349 * 8 7 6 34 34 H 1.08996 * 109.46496 * 181.38351 * 9 8 7 35 35 H 1.09010 * 109.45746 * 301.34479 * 9 8 7 36 36 H 1.08994 * 109.47045 * 95.09940 * 13 12 10 37 37 H 1.09000 * 109.46999 * 215.09621 * 13 12 10 38 38 H 1.09003 * 109.47427 * 335.09903 * 13 12 10 39 39 H 0.97002 * 119.99776 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.58705 * 246.15225 * 22 6 4 41 41 H 1.08997 * 109.58513 * 6.58301 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.6215 -1.7651 1.1237 6 7 1.8268 -0.1737 2.4495 7 6 1.1798 1.1379 2.5907 8 6 2.0785 2.0422 3.4400 9 6 2.3859 1.3468 4.7681 10 6 3.1327 0.0382 4.4999 11 1 4.0534 0.2497 3.9563 12 7 3.4542 -0.6112 5.7732 13 6 2.3791 -0.9961 6.6910 14 6 4.7594 -0.8585 6.1054 15 1 5.5566 -0.4645 5.4924 16 6 5.0579 -1.6155 7.2301 17 7 4.1820 -2.4832 7.6907 18 14 6.7027 -1.4026 8.0896 19 1 6.5540 -0.4416 9.2118 20 1 7.1586 -2.7136 8.6176 21 1 7.7030 -0.8836 7.1226 22 6 2.2460 -0.8889 3.6627 23 6 2.0400 -0.7213 -1.2493 24 9 1.5738 -2.0403 -1.2492 25 9 1.5738 -0.0618 -2.3915 26 9 3.4391 -0.7218 -1.2489 27 1 -0.3633 -1.0233 0.0948 28 1 -0.3634 0.5937 0.8387 29 1 -0.3633 0.4295 -0.9337 30 1 1.0389 1.5837 1.6060 31 1 0.2129 1.0176 3.0791 32 1 3.0092 2.2348 2.9062 33 1 1.5673 2.9853 3.6329 34 1 3.0051 1.9985 5.3845 35 1 1.4532 1.1322 5.2900 36 1 2.1159 -2.0406 6.5247 37 1 2.7154 -0.8655 7.7196 38 1 1.5061 -0.3685 6.5117 39 1 4.3907 -3.0125 8.4764 40 1 1.3670 -1.1741 4.2408 41 1 2.8086 -1.7803 3.3853 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027524630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:59 Heat of formation + Delta-G solvation = -161.351867 kcal Electronic energy + Delta-G solvation = -27249.642747 eV Core-core repulsion = 22943.525201 eV Total energy + Delta-G solvation = -4306.117546 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.14527 -47.67895 -47.52480 -40.31377 -37.64953 -35.34845 -34.21773 -32.29729 -31.35917 -28.83316 -26.73606 -26.08264 -25.57031 -23.84392 -22.83595 -21.72332 -19.94323 -19.02692 -18.64148 -18.38621 -17.41934 -16.91245 -16.75750 -15.72852 -15.20706 -14.92282 -14.55011 -14.45026 -14.32213 -14.02589 -13.91835 -13.78333 -13.71988 -13.69935 -13.51775 -13.42228 -12.91979 -12.71586 -12.56897 -12.30620 -12.20798 -11.95857 -11.65138 -11.21802 -11.12647 -10.85703 -10.67949 -10.46029 -10.39148 -10.21942 -9.92239 -9.83830 -9.70028 -8.63857 -8.37397 -6.94910 -5.79311 -3.08523 2.41940 2.51871 2.96857 3.39904 3.47575 3.48859 3.55849 3.87658 3.89850 4.39784 4.48579 4.58403 4.68110 4.80181 4.98134 5.09253 5.18980 5.23106 5.34238 5.42342 5.45170 5.62153 5.67748 5.78740 5.87896 6.01563 6.13379 6.27134 6.39114 6.51462 6.69039 6.82756 6.87888 7.38417 7.41289 7.62167 7.82044 8.09133 8.30266 9.18420 9.84179 10.27949 11.28016 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.003756 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.679736 B = 7453.818049 C = 7975.766278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.164 4.164 3 H 0.135 0.865 4 C 0.518 3.482 5 O -0.520 6.520 6 N -0.597 5.597 7 C 0.101 3.899 8 C -0.132 4.132 9 C -0.134 4.134 10 C 0.170 3.830 11 H 0.066 0.934 12 N -0.593 5.593 13 C 0.159 3.841 14 C -0.257 4.257 15 H 0.075 0.925 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.897 3.103 19 H -0.289 1.289 20 H -0.293 1.293 21 H -0.280 1.280 22 C 0.097 3.903 23 C 0.473 3.527 24 F -0.170 7.170 25 F -0.184 7.184 26 F -0.174 7.174 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.055 0.945 38 H 0.001 0.999 39 H 0.253 0.747 40 H 0.065 0.935 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.838 10.341 -14.939 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 H 0.153 0.847 4 C 0.303 3.697 5 O -0.396 6.396 6 N -0.331 5.331 7 C -0.021 4.021 8 C -0.171 4.171 9 C -0.174 4.174 10 C 0.060 3.940 11 H 0.084 0.916 12 N -0.315 5.315 13 C 0.014 3.986 14 C -0.386 4.386 15 H 0.093 0.907 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.727 3.273 19 H -0.216 1.216 20 H -0.219 1.219 21 H -0.205 1.205 22 C -0.026 4.026 23 C 0.418 3.582 24 F -0.151 7.151 25 F -0.166 7.166 26 F -0.155 7.155 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.019 0.981 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.473 9.601 -14.829 20.537 hybrid contribution 0.909 -0.009 0.355 0.976 sum -9.564 9.592 -14.474 19.824 Atomic orbital electron populations 1.21933 0.89333 1.04975 1.04766 1.22652 1.01351 1.02898 0.91753 0.84688 1.19683 0.80284 0.85740 0.84028 1.90826 1.40680 1.22382 1.85674 1.48163 1.59113 1.19885 1.05895 1.21936 0.96457 0.83142 1.00615 1.21923 0.99815 0.97987 0.97372 1.22106 1.01219 0.98439 0.95597 1.20571 0.95702 0.90388 0.87313 0.91597 1.44089 1.03913 1.68855 1.14641 1.20880 0.87213 0.95900 0.94593 1.19292 0.82860 1.27986 1.08434 0.90744 1.24733 0.97801 0.96919 1.00179 1.70216 1.35985 1.23002 1.25383 0.86325 0.83719 0.77140 0.80069 1.21589 1.21938 1.20483 1.22668 0.99457 0.97418 0.83090 1.19782 0.75982 0.78019 0.84409 1.93214 1.88245 1.37008 1.96626 1.93167 1.88600 1.80919 1.53898 1.93225 1.29277 1.96366 1.96649 0.90482 0.89374 0.90066 0.90233 0.90942 0.91583 0.90964 0.91422 0.92141 0.96058 0.92606 0.98086 0.93717 0.91687 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.59 37.16 0.32 -0.83 16 2 C -0.16 -1.70 1.86 -91.77 -0.17 -1.87 16 3 H 0.14 1.01 7.17 -51.93 -0.37 0.64 16 4 C 0.52 7.72 6.76 -10.99 -0.07 7.64 16 5 O -0.52 -10.21 14.27 5.56 0.08 -10.13 16 6 N -0.60 -8.43 2.97 -172.76 -0.51 -8.95 16 7 C 0.10 0.99 5.08 -3.71 -0.02 0.97 16 8 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 9 C -0.13 -2.04 5.13 -26.69 -0.14 -2.17 16 10 C 0.17 3.29 2.74 -67.81 -0.19 3.10 16 11 H 0.07 1.36 7.79 -51.93 -0.40 0.96 16 12 N -0.59 -14.33 2.82 -173.34 -0.49 -14.82 16 13 C 0.16 3.75 7.98 59.85 0.48 4.23 16 14 C -0.26 -6.99 9.69 -15.06 -0.15 -7.14 16 15 H 0.07 2.01 7.78 -52.48 -0.41 1.60 16 16 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 17 N -0.90 -26.08 10.63 55.49 0.59 -25.49 16 18 Si 0.90 21.83 29.62 -169.99 -5.04 16.79 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.10 1.76 5.80 -3.71 -0.02 1.74 16 23 C 0.47 5.90 2.43 37.16 0.09 5.99 16 24 F -0.17 -2.46 15.82 2.25 0.04 -2.42 16 25 F -0.18 -1.98 16.71 2.25 0.04 -1.94 16 26 F -0.17 -2.56 16.57 2.25 0.04 -2.52 16 27 H 0.08 0.67 7.95 -51.93 -0.41 0.26 16 28 H 0.09 0.51 5.91 -51.93 -0.31 0.21 16 29 H 0.08 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.08 0.53 4.86 -51.93 -0.25 0.28 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.91 6.71 -51.92 -0.35 0.56 16 36 H 0.02 0.55 7.74 -51.93 -0.40 0.14 16 37 H 0.06 1.45 6.62 -51.93 -0.34 1.11 16 38 H 0.00 0.01 6.45 -51.93 -0.34 -0.32 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.06 1.18 7.51 -51.93 -0.39 0.79 16 41 H 0.09 2.03 7.00 -51.93 -0.36 1.67 16 LS Contribution 329.82 15.07 4.97 4.97 Total: -1.00 -32.08 329.82 -5.97 -38.04 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -5.56 Total: -3.56 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -0.11 Total: 10.03 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.41 Total: -49.26 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.11 Total: -6.89 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.04 Total: 16.79 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.08 -5.97 -38.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027524630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.309 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds