Wall clock time and date at job start Tue Mar 31 2020 09:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47534 * 2 1 4 4 C 1.50704 * 109.47072 * 239.99637 * 2 1 3 5 5 O 1.21273 * 120.00135 * 328.62252 * 4 2 1 6 6 N 1.34775 * 119.99695 * 148.62017 * 4 2 1 7 7 C 1.46932 * 120.63194 * 355.46716 * 6 4 2 8 8 C 1.53200 * 108.77188 * 126.41403 * 7 6 4 9 9 C 1.53034 * 109.31100 * 54.63862 * 8 7 6 10 10 C 1.53041 * 109.53905 * 298.63017 * 9 8 7 11 11 H 1.08995 * 109.49945 * 301.38105 * 10 9 8 12 12 N 1.46500 * 109.49785 * 181.31646 * 10 9 8 13 13 C 1.46502 * 120.00447 * 300.00142 * 12 10 9 14 14 C 1.36943 * 120.00003 * 120.00161 * 12 10 9 15 15 H 1.08004 * 119.99380 * 331.31674 * 14 12 10 16 16 C 1.38800 * 120.00139 * 151.58554 * 14 12 10 17 17 N 1.31624 * 120.00293 * 0.85143 * 16 14 12 18 18 Si 1.86799 * 120.00217 * 180.84689 * 16 14 12 19 19 H 1.48499 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47267 * 120.00013 * 18 16 14 21 21 H 1.48499 * 109.47479 * 240.00410 * 18 16 14 22 22 C 1.46923 * 120.63252 * 175.49445 * 6 4 2 23 23 C 1.53007 * 109.47089 * 120.00283 * 2 1 3 24 24 F 1.39889 * 109.47249 * 180.02562 * 23 2 1 25 25 F 1.39905 * 109.46576 * 299.99966 * 23 2 1 26 26 F 1.39899 * 109.47089 * 59.99773 * 23 2 1 27 27 H 1.09008 * 109.46939 * 64.96939 * 1 2 3 28 28 H 1.08996 * 109.47218 * 184.96344 * 1 2 3 29 29 H 1.08997 * 109.47119 * 304.97239 * 1 2 3 30 30 H 1.09000 * 109.58446 * 6.63170 * 7 6 4 31 31 H 1.08993 * 109.58754 * 246.20232 * 7 6 4 32 32 H 1.09000 * 109.49632 * 294.68616 * 8 7 6 33 33 H 1.08998 * 109.51772 * 174.60343 * 8 7 6 34 34 H 1.09007 * 109.46065 * 178.61159 * 9 8 7 35 35 H 1.08998 * 109.45444 * 58.64572 * 9 8 7 36 36 H 1.08996 * 109.47359 * 273.43994 * 13 12 10 37 37 H 1.09001 * 109.46682 * 33.44137 * 13 12 10 38 38 H 1.09003 * 109.46780 * 153.43424 * 13 12 10 39 39 H 0.97001 * 120.00252 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.58840 * 113.79482 * 22 6 4 41 41 H 1.08997 * 109.58632 * 353.37344 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 1.3891 -1.6194 -1.7109 6 7 3.1964 -0.3357 -1.7969 7 6 3.9374 0.8260 -1.2868 8 6 5.3749 0.3967 -0.9769 9 6 5.9912 -0.2444 -2.2224 10 6 5.1881 -1.4887 -2.6082 11 1 5.1865 -2.1931 -1.7764 12 7 5.7973 -2.1195 -3.7818 13 6 5.9158 -1.3722 -5.0364 14 6 6.2559 -3.4076 -3.7062 15 1 6.6044 -3.8021 -2.7631 16 6 6.2782 -4.2042 -4.8426 17 7 5.8742 -3.7163 -5.9964 18 14 6.8816 -5.9687 -4.7347 19 1 7.2762 -6.2722 -3.3356 20 1 5.7947 -6.8901 -5.1529 21 1 8.0533 -6.1469 -5.6295 22 6 3.7484 -1.0808 -2.9366 23 6 2.0400 -0.7213 1.2493 24 9 3.4389 -0.7209 1.2496 25 9 1.5736 -0.0618 2.3915 26 9 1.5736 -2.0403 1.2492 27 1 -0.3633 0.4348 -0.9312 28 1 -0.3633 -1.0238 0.0889 29 1 -0.3633 0.5890 0.8421 30 1 3.4613 1.1923 -0.3772 31 1 3.9456 1.6137 -2.0401 32 1 5.3710 -0.3252 -0.1602 33 1 5.9615 1.2690 -0.6887 34 1 7.0224 -0.5286 -2.0121 35 1 5.9721 0.4698 -3.0456 36 1 4.9979 -1.4831 -5.6135 37 1 6.0818 -0.3176 -4.8167 38 1 6.7562 -1.7601 -5.6122 39 1 5.8894 -4.2731 -6.7905 40 1 3.7412 -0.4486 -3.8244 41 1 3.1478 -1.9725 -3.1156 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027524631.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:03 Heat of formation + Delta-G solvation = -163.516533 kcal Electronic energy + Delta-G solvation = -27699.123649 eV Core-core repulsion = 23392.912236 eV Total energy + Delta-G solvation = -4306.211413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.27359 -47.78298 -47.68813 -40.21246 -37.64622 -35.17052 -34.03982 -32.33159 -31.30428 -28.88466 -26.72910 -26.01183 -25.43829 -23.89315 -22.73399 -21.68346 -19.81258 -18.92984 -18.79669 -18.45738 -17.60555 -17.06488 -16.75427 -15.57177 -15.17322 -14.65733 -14.64381 -14.61777 -14.24220 -14.13305 -14.02772 -13.83420 -13.78368 -13.65527 -13.47387 -13.26541 -12.93213 -12.65407 -12.57270 -12.20132 -12.13159 -11.84513 -11.59172 -11.13940 -11.00954 -10.82617 -10.63402 -10.38754 -10.32768 -10.19697 -9.96275 -9.79405 -9.70055 -8.58105 -8.40613 -6.70382 -5.76784 -3.25974 2.08903 2.85145 2.90945 3.38292 3.45772 3.47443 3.59731 3.77154 3.87386 4.37761 4.47260 4.55482 4.61173 4.91907 5.09703 5.24876 5.31572 5.39354 5.42052 5.50773 5.53698 5.72508 5.83934 5.87344 5.97057 6.12195 6.21373 6.36587 6.45770 6.59398 6.79037 6.91541 6.96122 7.41639 7.46989 7.73133 7.81823 8.12880 8.43676 9.23824 9.83388 10.34369 11.28818 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.019551 B = 0.004300 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.837051 B = 6509.360392 C = 6847.615566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.166 4.166 3 H 0.133 0.867 4 C 0.513 3.487 5 O -0.516 6.516 6 N -0.596 5.596 7 C 0.104 3.896 8 C -0.132 4.132 9 C -0.133 4.133 10 C 0.168 3.832 11 H 0.065 0.935 12 N -0.591 5.591 13 C 0.161 3.839 14 C -0.257 4.257 15 H 0.068 0.932 16 C 0.008 3.992 17 N -0.906 5.906 18 Si 0.905 3.095 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.290 1.290 22 C 0.099 3.901 23 C 0.464 3.536 24 F -0.175 7.175 25 F -0.180 7.180 26 F -0.170 7.170 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.016 0.984 37 H -0.008 1.008 38 H 0.063 0.937 39 H 0.253 0.747 40 H 0.065 0.935 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 13.466 13.319 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.188 4.188 3 H 0.151 0.849 4 C 0.297 3.703 5 O -0.391 6.391 6 N -0.329 5.329 7 C -0.019 4.019 8 C -0.170 4.170 9 C -0.173 4.173 10 C 0.058 3.942 11 H 0.083 0.917 12 N -0.313 5.313 13 C 0.017 3.983 14 C -0.387 4.387 15 H 0.085 0.915 16 C -0.190 4.190 17 N -0.550 5.550 18 Si 0.734 3.266 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.216 1.216 22 C -0.024 4.024 23 C 0.410 3.590 24 F -0.156 7.156 25 F -0.161 7.161 26 F -0.152 7.152 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.011 0.989 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.473 12.841 12.865 19.653 hybrid contribution 0.434 -0.932 0.143 1.038 sum -7.039 11.908 13.008 18.989 Atomic orbital electron populations 1.21705 0.89041 1.04947 1.04004 1.22766 1.01872 1.02655 0.91527 0.84924 1.19705 0.81667 0.84173 0.84730 1.90756 1.55822 1.29464 1.63046 1.48318 1.20825 1.30201 1.33563 1.21865 0.93281 0.87887 0.98900 1.21916 0.94455 1.01073 0.99605 1.22075 1.00337 0.98831 0.96043 1.20664 0.88824 0.92983 0.91690 0.91654 1.43888 1.67447 1.12258 1.07722 1.20843 1.00777 0.89547 0.87150 1.19247 1.35796 0.87895 0.95724 0.91469 1.25207 0.99605 0.97921 0.96290 1.70049 1.50879 1.35196 0.98912 0.86181 0.77839 0.84981 0.77565 1.20247 1.21487 1.21647 1.22624 0.97192 0.96458 0.86146 1.20042 0.75839 0.78199 0.84952 1.93230 1.29294 1.96371 1.96690 1.93187 1.88527 1.80772 1.53635 1.93246 1.88278 1.36962 1.96665 0.89963 0.90048 0.90616 0.90735 0.90936 0.91236 0.91104 0.91598 0.92182 0.96609 0.98924 0.91870 0.93660 0.91686 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.48 37.16 0.32 -1.00 16 2 C -0.17 -1.80 2.08 -91.77 -0.19 -1.99 16 3 H 0.13 1.01 5.91 -51.93 -0.31 0.70 16 4 C 0.51 7.90 6.20 -10.98 -0.07 7.83 16 5 O -0.52 -10.05 15.73 5.56 0.09 -9.97 16 6 N -0.60 -9.04 2.97 -172.77 -0.51 -9.56 16 7 C 0.10 1.17 5.65 -3.70 -0.02 1.15 16 8 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 9 C -0.13 -2.15 5.11 -26.69 -0.14 -2.29 16 10 C 0.17 3.39 2.75 -67.81 -0.19 3.21 16 11 H 0.07 1.42 7.89 -51.93 -0.41 1.01 16 12 N -0.59 -14.58 2.82 -173.35 -0.49 -15.07 16 13 C 0.16 3.88 7.95 59.85 0.48 4.36 16 14 C -0.26 -7.06 9.54 -15.06 -0.14 -7.20 16 15 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 16 C 0.01 0.23 5.29 -17.43 -0.09 0.14 16 17 N -0.91 -26.25 10.44 55.49 0.58 -25.67 16 18 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 C 0.10 1.88 5.78 -3.71 -0.02 1.86 16 23 C 0.46 5.58 2.68 37.16 0.10 5.68 16 24 F -0.17 -2.23 14.91 2.25 0.03 -2.20 16 25 F -0.18 -1.90 16.89 2.25 0.04 -1.86 16 26 F -0.17 -2.47 16.42 2.25 0.04 -2.43 16 27 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.08 0.90 7.54 -51.93 -0.39 0.51 16 29 H 0.07 0.52 7.94 -51.93 -0.41 0.11 16 30 H 0.07 0.64 4.91 -51.93 -0.26 0.38 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.92 7.11 -51.93 -0.37 0.55 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.96 6.74 -51.93 -0.35 0.61 16 36 H 0.02 0.40 7.80 -51.93 -0.40 0.00 16 37 H -0.01 -0.16 6.47 -51.93 -0.34 -0.49 16 38 H 0.06 1.67 6.73 -51.93 -0.35 1.32 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.06 1.23 7.51 -51.93 -0.39 0.84 16 41 H 0.09 2.08 7.03 -51.93 -0.37 1.72 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -31.33 330.94 -5.97 -37.31 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -5.58 Total: -2.49 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -0.13 Total: 9.96 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.42 Total: -50.30 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.11 Total: -6.49 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.33 -5.97 -37.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027524631.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.211 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds