Wall clock time and date at job start Tue Mar 31 2020 10:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46991 * 2 1 4 4 C 1.34773 * 119.99844 * 83.46739 * 3 2 1 5 5 O 1.21777 * 119.99973 * 185.20651 * 4 3 2 6 6 C 1.46134 * 120.00403 * 5.21020 * 4 3 2 7 7 C 1.37823 * 126.03517 * 174.00387 * 6 4 3 8 8 C 1.39910 * 106.68050 * 179.97438 * 7 6 4 9 9 C 1.36098 * 107.17091 * 0.02562 * 8 7 6 10 10 O 1.35371 * 125.57357 * 179.97438 * 9 8 7 11 11 C 1.42898 * 116.99914 * 179.97438 * 10 9 8 12 12 O 1.34004 * 108.84745 * 359.97438 * 9 8 7 13 13 C 1.46500 * 120.00049 * 263.46280 * 3 2 1 14 14 H 1.09005 * 110.88630 * 10.03637 * 13 3 2 15 15 C 1.55155 * 111.00662 * 246.15172 * 13 3 2 16 16 C 1.54316 * 102.94516 * 277.43088 * 15 13 3 17 17 N 1.47028 * 107.26959 * 337.80427 * 16 15 13 18 18 C 1.36939 * 125.64664 * 178.98693 * 17 16 15 19 19 H 1.08004 * 119.99839 * 179.97438 * 18 17 16 20 20 C 1.38814 * 120.00048 * 359.97405 * 18 17 16 21 21 N 1.31616 * 120.00289 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99913 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46867 * 60.00270 * 22 20 18 24 24 H 1.48494 * 109.47025 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47220 * 300.00554 * 22 20 18 26 26 C 1.47418 * 108.70325 * 358.94531 * 17 16 15 27 27 H 1.09000 * 109.46633 * 300.00079 * 1 2 3 28 28 H 1.09000 * 109.46667 * 60.00143 * 1 2 3 29 29 H 1.08995 * 109.46637 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47419 * 240.00407 * 2 1 3 31 31 H 1.08997 * 109.47382 * 119.99918 * 2 1 3 32 32 H 1.08002 * 126.66286 * 359.97438 * 7 6 4 33 33 H 1.07992 * 126.41331 * 179.73864 * 8 7 6 34 34 H 1.09005 * 109.47406 * 59.99590 * 11 10 9 35 35 H 1.09003 * 109.47360 * 179.97438 * 11 10 9 36 36 H 1.09007 * 109.47157 * 299.99828 * 11 10 9 37 37 H 1.09000 * 110.71768 * 35.79226 * 15 13 3 38 38 H 1.09005 * 110.71888 * 159.06299 * 15 13 3 39 39 H 1.09002 * 109.88584 * 97.21945 * 16 15 13 40 40 H 1.09001 * 109.88658 * 218.38862 * 16 15 13 41 41 H 0.96998 * 120.00030 * 179.97438 * 21 20 18 42 42 H 1.09007 * 110.36568 * 265.28882 * 26 17 16 43 43 H 1.09003 * 110.37288 * 142.96530 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1177 2.0608 1.1596 5 8 2.4325 3.2372 1.1509 6 6 1.8479 1.3861 2.4275 7 6 2.0230 1.9227 3.6848 8 6 1.6435 0.9344 4.5996 9 6 1.2570 -0.1533 3.8787 10 8 0.8179 -1.3250 4.3953 11 6 0.4577 -2.3492 3.4661 12 8 1.3822 0.1253 2.5739 13 6 2.3987 2.0238 -1.2605 14 1 2.0976 1.4151 -2.1132 15 6 3.9216 2.3183 -1.2973 16 6 4.0358 3.6459 -0.5191 17 7 2.7178 4.2957 -0.5685 18 6 2.3936 5.4887 0.0204 19 1 1.3929 5.8836 -0.0750 20 6 3.3511 6.1904 0.7399 21 7 4.5707 5.7094 0.8557 22 14 2.9089 7.8182 1.5427 23 1 1.8104 7.6062 2.5191 24 1 4.0983 8.3627 2.2454 25 1 2.4666 8.7798 0.5011 26 6 1.8035 3.4507 -1.3580 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3832 2.9137 3.9186 33 1 1.6593 1.0174 5.6762 34 1 1.3225 -2.6048 2.8538 35 1 0.1244 -3.2328 4.0104 36 1 -0.3482 -1.9913 2.8252 37 1 4.4794 1.5278 -0.7952 38 1 4.2657 2.4422 -2.3241 39 1 4.3120 3.4462 0.5163 40 1 4.7829 4.2869 -0.9871 41 1 5.2398 6.2000 1.3582 42 1 1.7816 3.7824 -2.3961 43 1 0.8012 3.4737 -0.9303 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033996440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:52 Heat of formation + Delta-G solvation = 33.321482 kcal Electronic energy + Delta-G solvation = -27633.893966 eV Core-core repulsion = 23878.074830 eV Total energy + Delta-G solvation = -3755.819136 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.51515 -39.65353 -38.48586 -36.03286 -35.32868 -32.90984 -32.14923 -29.98177 -29.37618 -28.73399 -27.50105 -26.71100 -24.34610 -23.39281 -22.33306 -21.73475 -20.58110 -19.80301 -18.96824 -18.15119 -17.12084 -16.82688 -16.35166 -15.69312 -15.38115 -15.15487 -14.64159 -14.36182 -14.05789 -13.80071 -13.59802 -13.21514 -12.92749 -12.76847 -12.60441 -12.30968 -12.21482 -11.88826 -11.83804 -11.65836 -11.62183 -11.53397 -10.94778 -10.69126 -10.65960 -10.61731 -9.98986 -9.94764 -9.71958 -9.64166 -9.37595 -8.87904 -8.38068 -7.83571 -7.78247 -6.22726 -5.36911 -2.61900 1.49467 2.39223 2.64507 3.19311 3.55589 3.57859 3.62047 3.62890 3.95966 4.76766 4.79885 4.87597 4.93861 5.07615 5.13760 5.16979 5.30773 5.49969 5.51112 5.62786 5.63820 5.73897 5.78781 5.89307 5.93817 5.99900 6.07599 6.08554 6.27639 6.30327 6.56043 6.60141 6.63800 6.66803 6.73034 6.81901 7.24843 7.33778 7.81153 7.92222 8.00326 8.14628 8.59027 9.06612 9.55064 10.17136 10.83140 11.76351 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.005446 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.113076 B = 5139.682795 C = 6242.309858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.607 5.607 4 C 0.545 3.455 5 O -0.376 6.376 6 C -0.073 4.073 7 C -0.103 4.103 8 C -0.235 4.235 9 C 0.178 3.822 10 O -0.268 6.268 11 C 0.022 3.978 12 O -0.185 6.185 13 C 0.134 3.866 14 H 0.083 0.917 15 C -0.161 4.161 16 C 0.189 3.811 17 N -0.566 5.566 18 C -0.191 4.191 19 H 0.066 0.934 20 C -0.006 4.006 21 N -0.922 5.922 22 Si 0.899 3.101 23 H -0.290 1.290 24 H -0.294 1.294 25 H -0.291 1.291 26 C 0.130 3.870 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.165 0.835 33 H 0.155 0.845 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.032 0.968 41 H 0.245 0.755 42 H 0.023 0.977 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.121 -18.394 1.047 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.015 4.015 3 N -0.344 5.344 4 C 0.329 3.671 5 O -0.241 6.241 6 C -0.124 4.124 7 C -0.123 4.123 8 C -0.255 4.255 9 C 0.083 3.917 10 O -0.183 6.183 11 C -0.072 4.072 12 O -0.086 6.086 13 C 0.030 3.970 14 H 0.101 0.899 15 C -0.201 4.201 16 C 0.065 3.935 17 N -0.292 5.292 18 C -0.320 4.320 19 H 0.084 0.916 20 C -0.201 4.201 21 N -0.572 5.572 22 Si 0.731 3.269 23 H -0.217 1.217 24 H -0.220 1.220 25 H -0.218 1.218 26 C 0.003 3.997 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.183 0.817 33 H 0.173 0.827 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.041 0.959 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.905 -17.755 1.136 19.084 hybrid contribution -0.390 0.414 0.564 0.801 sum -7.295 -17.341 1.700 18.890 Atomic orbital electron populations 1.22187 0.96483 1.01170 1.02431 1.21563 0.94104 0.83521 1.02308 1.47684 1.67167 1.13248 1.06343 1.17109 0.81599 0.87394 0.81038 1.91813 1.39269 1.10272 1.82763 1.23044 1.10340 0.81463 0.97530 1.21978 0.99877 1.00622 0.89803 1.20709 1.12621 0.91452 1.00700 1.20845 1.00438 0.88338 0.82078 1.86358 1.80279 1.19691 1.31950 1.23083 1.00834 0.89520 0.93802 1.84276 1.67392 1.32049 1.24854 1.22319 0.95861 0.94832 0.84010 0.89878 1.23406 0.94617 1.01190 1.00841 1.21120 0.87610 0.87135 0.97675 1.44136 1.06309 1.20635 1.58115 1.18741 0.95412 0.93284 1.24519 0.91579 1.24549 0.96081 0.98405 1.01101 1.69930 1.02383 1.38458 1.46398 0.86381 0.76706 0.84400 0.79364 1.21718 1.22002 1.21801 1.21767 0.94420 0.88622 0.94930 0.92603 0.92444 0.92473 0.90906 0.90276 0.81742 0.82710 0.92112 0.87694 0.92057 0.92418 0.91864 0.92571 0.95013 0.94489 0.95936 0.94661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.77 37.16 0.36 -1.52 16 2 C 0.11 1.37 5.70 -4.04 -0.02 1.35 16 3 N -0.61 -10.33 2.57 -165.39 -0.43 -10.75 16 4 C 0.55 11.08 7.02 -13.09 -0.09 10.99 16 5 O -0.38 -9.45 8.84 5.12 0.05 -9.40 16 6 C -0.07 -1.31 6.62 -36.57 -0.24 -1.55 16 7 C -0.10 -1.79 10.67 -39.11 -0.42 -2.21 16 8 C -0.23 -3.48 10.89 -39.73 -0.43 -3.91 16 9 C 0.18 2.52 7.86 29.96 0.24 2.75 16 10 O -0.27 -3.16 10.55 -41.04 -0.43 -3.60 16 11 C 0.02 0.17 10.74 101.05 1.09 1.26 16 12 O -0.18 -2.73 5.69 -19.26 -0.11 -2.84 16 13 C 0.13 2.34 3.77 -65.78 -0.25 2.09 16 14 H 0.08 1.17 7.90 -51.93 -0.41 0.76 16 15 C -0.16 -3.09 6.52 -24.90 -0.16 -3.25 16 16 C 0.19 4.78 4.22 -3.06 -0.01 4.77 16 17 N -0.57 -14.83 1.73 -170.07 -0.29 -15.13 16 18 C -0.19 -5.55 8.73 -15.06 -0.13 -5.68 16 19 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 21 N -0.92 -28.33 10.31 55.49 0.57 -27.75 16 22 Si 0.90 23.45 29.55 -169.99 -5.02 18.42 16 23 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 C 0.13 2.77 6.18 -2.53 -0.02 2.76 16 27 H 0.05 0.75 7.22 -51.93 -0.37 0.38 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 31 H 0.08 1.02 5.29 -51.93 -0.27 0.74 16 32 H 0.17 3.01 8.06 -52.49 -0.42 2.59 16 33 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.61 5.85 -51.93 -0.30 1.31 16 40 H 0.03 0.90 7.50 -51.93 -0.39 0.51 16 41 H 0.24 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -33.92 341.96 -7.07 -40.98 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.36 Total: -2.64 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -0.19 Total: 7.56 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.15 Total: -53.63 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.50 Total: -15.85 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.42 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.92 -7.07 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033996440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.305 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds