Wall clock time and date at job start Tue Mar 31 2020 10:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46991 * 2 1 4 4 C 1.34773 * 119.99844 * 83.46739 * 3 2 1 5 5 O 1.21777 * 119.99973 * 185.20651 * 4 3 2 6 6 C 1.46134 * 120.00403 * 5.21020 * 4 3 2 7 7 C 1.37823 * 126.03517 * 174.00387 * 6 4 3 8 8 C 1.39910 * 106.68050 * 179.97438 * 7 6 4 9 9 C 1.36098 * 107.17091 * 0.02562 * 8 7 6 10 10 O 1.35371 * 125.57357 * 179.97438 * 9 8 7 11 11 C 1.42898 * 116.99914 * 179.97438 * 10 9 8 12 12 O 1.34004 * 108.84745 * 359.97438 * 9 8 7 13 13 C 1.46500 * 120.00049 * 263.46280 * 3 2 1 14 14 H 1.09005 * 110.88630 * 10.03637 * 13 3 2 15 15 C 1.55155 * 111.00662 * 246.15172 * 13 3 2 16 16 C 1.54316 * 102.94516 * 277.43088 * 15 13 3 17 17 N 1.47028 * 107.26959 * 337.80427 * 16 15 13 18 18 C 1.36939 * 125.64664 * 178.98693 * 17 16 15 19 19 H 1.08004 * 119.99839 * 179.97438 * 18 17 16 20 20 C 1.38814 * 120.00048 * 359.97405 * 18 17 16 21 21 N 1.31616 * 120.00289 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99913 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46867 * 60.00270 * 22 20 18 24 24 H 1.48494 * 109.47025 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47220 * 300.00554 * 22 20 18 26 26 C 1.47418 * 108.70325 * 358.94531 * 17 16 15 27 27 H 1.09000 * 109.46633 * 300.00079 * 1 2 3 28 28 H 1.09000 * 109.46667 * 60.00143 * 1 2 3 29 29 H 1.08995 * 109.46637 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47419 * 240.00407 * 2 1 3 31 31 H 1.08997 * 109.47382 * 119.99918 * 2 1 3 32 32 H 1.08002 * 126.66286 * 359.97438 * 7 6 4 33 33 H 1.07992 * 126.41331 * 179.73864 * 8 7 6 34 34 H 1.09005 * 109.47406 * 59.99590 * 11 10 9 35 35 H 1.09003 * 109.47360 * 179.97438 * 11 10 9 36 36 H 1.09007 * 109.47157 * 299.99828 * 11 10 9 37 37 H 1.09000 * 110.71768 * 35.79226 * 15 13 3 38 38 H 1.09005 * 110.71888 * 159.06299 * 15 13 3 39 39 H 1.09002 * 109.88584 * 97.21945 * 16 15 13 40 40 H 1.09001 * 109.88658 * 218.38862 * 16 15 13 41 41 H 0.96998 * 120.00030 * 179.97438 * 21 20 18 42 42 H 1.09007 * 110.36568 * 265.28882 * 26 17 16 43 43 H 1.09003 * 110.37288 * 142.96530 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1177 2.0608 1.1596 5 8 2.4325 3.2372 1.1509 6 6 1.8479 1.3861 2.4275 7 6 2.0230 1.9227 3.6848 8 6 1.6435 0.9344 4.5996 9 6 1.2570 -0.1533 3.8787 10 8 0.8179 -1.3250 4.3953 11 6 0.4577 -2.3492 3.4661 12 8 1.3822 0.1253 2.5739 13 6 2.3987 2.0238 -1.2605 14 1 2.0976 1.4151 -2.1132 15 6 3.9216 2.3183 -1.2973 16 6 4.0358 3.6459 -0.5191 17 7 2.7178 4.2957 -0.5685 18 6 2.3936 5.4887 0.0204 19 1 1.3929 5.8836 -0.0750 20 6 3.3511 6.1904 0.7399 21 7 4.5707 5.7094 0.8557 22 14 2.9089 7.8182 1.5427 23 1 1.8104 7.6062 2.5191 24 1 4.0983 8.3627 2.2454 25 1 2.4666 8.7798 0.5011 26 6 1.8035 3.4507 -1.3580 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3832 2.9137 3.9186 33 1 1.6593 1.0174 5.6762 34 1 1.3225 -2.6048 2.8538 35 1 0.1244 -3.2328 4.0104 36 1 -0.3482 -1.9913 2.8252 37 1 4.4794 1.5278 -0.7952 38 1 4.2657 2.4422 -2.3241 39 1 4.3120 3.4462 0.5163 40 1 4.7829 4.2869 -0.9871 41 1 5.2398 6.2000 1.3582 42 1 1.7816 3.7824 -2.3961 43 1 0.8012 3.4737 -0.9303 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033996440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:51 Heat of formation + Delta-G solvation = 12.014575 kcal Electronic energy + Delta-G solvation = -27634.817902 eV Core-core repulsion = 23878.074830 eV Total energy + Delta-G solvation = -3756.743073 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.73663 -41.15190 -39.46802 -37.74127 -36.74766 -34.24142 -34.01215 -31.47031 -30.68429 -30.30545 -28.86720 -27.88986 -26.31478 -24.67230 -23.53296 -22.92481 -21.99446 -21.73842 -20.27589 -19.33168 -18.77608 -18.17665 -17.81715 -17.13864 -16.54132 -16.43217 -16.24162 -15.91760 -15.59201 -15.38976 -14.93570 -14.55688 -14.20050 -14.06768 -13.75506 -13.61962 -13.54912 -13.39930 -13.36481 -12.98359 -12.80898 -12.72837 -12.66601 -12.47248 -12.19635 -12.04264 -11.98480 -11.63087 -11.55189 -11.35807 -10.98506 -10.57377 -10.44263 -9.40540 -9.00517 -8.29197 -7.60184 -4.83268 0.18052 1.20816 1.40163 1.44342 1.48225 1.53087 2.08205 2.38636 2.48373 2.63050 3.57972 3.69991 3.82492 3.87457 4.02756 4.14556 4.23493 4.29116 4.32447 4.39420 4.43074 4.47122 4.60755 4.63404 4.70390 4.76289 4.82763 4.88219 4.94328 5.02774 5.05827 5.10063 5.16431 5.29258 5.38995 5.52723 5.57072 5.85142 5.96069 6.05315 6.18481 6.44334 6.63365 7.35611 7.59226 8.06358 8.70076 9.51664 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.005446 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.113076 B = 5139.682795 C = 6242.309858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.104 3.896 3 N -0.603 5.603 4 C 0.542 3.458 5 O -0.442 6.442 6 C -0.095 4.095 7 C -0.114 4.114 8 C -0.245 4.245 9 C 0.199 3.801 10 O -0.268 6.268 11 C 0.010 3.990 12 O -0.169 6.169 13 C 0.147 3.853 14 H 0.139 0.861 15 C -0.146 4.146 16 C 0.200 3.800 17 N -0.580 5.580 18 C -0.190 4.190 19 H 0.061 0.939 20 C -0.064 4.064 21 N -0.949 5.949 22 Si 0.956 3.044 23 H -0.290 1.290 24 H -0.298 1.298 25 H -0.280 1.280 26 C 0.124 3.876 27 H 0.029 0.971 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.176 0.824 34 H 0.069 0.931 35 H 0.138 0.862 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.013 0.987 40 H -0.013 1.013 41 H 0.234 0.766 42 H 0.039 0.961 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.885 -22.008 0.060 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.018 4.018 3 N -0.338 5.338 4 C 0.327 3.673 5 O -0.312 6.312 6 C -0.146 4.146 7 C -0.135 4.135 8 C -0.265 4.265 9 C 0.103 3.897 10 O -0.182 6.182 11 C -0.084 4.084 12 O -0.069 6.069 13 C 0.043 3.957 14 H 0.157 0.843 15 C -0.185 4.185 16 C 0.076 3.924 17 N -0.305 5.305 18 C -0.320 4.320 19 H 0.079 0.921 20 C -0.256 4.256 21 N -0.601 5.601 22 Si 0.788 3.212 23 H -0.217 1.217 24 H -0.225 1.225 25 H -0.207 1.207 26 C -0.002 4.002 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.194 0.806 34 H 0.088 0.912 35 H 0.156 0.844 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.032 0.968 40 H 0.005 0.995 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.723 -21.446 0.106 23.152 hybrid contribution 0.029 1.324 0.922 1.614 sum -8.694 -20.122 1.028 21.944 Atomic orbital electron populations 1.22126 0.95339 1.02962 1.01141 1.21888 0.94931 0.80919 1.04027 1.47799 1.66089 1.14774 1.05177 1.17414 0.80519 0.87039 0.82355 1.91778 1.42410 1.12931 1.84071 1.22494 1.12633 0.82825 0.96668 1.21980 1.00073 1.00481 0.90986 1.20863 1.13041 0.91089 1.01512 1.20989 0.98234 0.88973 0.81509 1.86406 1.79557 1.19297 1.32972 1.23517 1.01512 0.89198 0.94151 1.84251 1.66998 1.30383 1.25303 1.22328 0.93887 0.93561 0.85920 0.84308 1.23246 0.96447 0.97650 1.01186 1.20770 0.86403 0.89398 0.95872 1.44274 1.07668 1.20477 1.58089 1.18987 0.94901 0.94387 1.23755 0.92125 1.25214 0.96264 1.01611 1.02529 1.70179 1.03060 1.39387 1.47442 0.85457 0.76017 0.81231 0.78528 1.21735 1.22475 1.20690 1.21976 0.93193 0.90544 0.94487 0.95208 0.92448 0.89077 0.87324 0.90303 0.83977 0.80619 0.91233 0.84429 0.91320 0.91299 0.89334 0.96847 0.99463 0.95684 0.94374 0.95819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.77 71.98 0.70 -2.31 16 2 C 0.10 2.22 5.70 86.38 0.49 2.71 16 3 N -0.60 -19.35 2.57 -795.35 -2.05 -21.40 16 4 C 0.54 22.40 7.02 86.29 0.61 23.01 16 5 O -0.44 -23.37 8.84 -4.59 -0.04 -23.41 16 6 C -0.10 -3.46 6.62 24.22 0.16 -3.30 16 7 C -0.11 -4.18 10.67 22.58 0.24 -3.93 16 8 C -0.25 -7.14 10.89 22.18 0.24 -6.90 16 9 C 0.20 5.25 7.86 67.32 0.53 5.78 16 10 O -0.27 -5.46 10.55 -64.41 -0.68 -6.14 16 11 C 0.01 0.11 10.74 113.37 1.22 1.33 16 12 O -0.17 -4.72 5.69 13.52 0.08 -4.64 16 13 C 0.15 4.73 3.77 46.38 0.17 4.90 16 14 H 0.14 3.05 7.90 -2.38 -0.02 3.04 16 15 C -0.15 -5.38 6.52 31.78 0.21 -5.17 16 16 C 0.20 10.56 4.22 86.73 0.37 10.92 16 17 N -0.58 -31.37 1.73 -691.97 -1.20 -32.57 16 18 C -0.19 -11.53 8.73 84.03 0.73 -10.79 16 19 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 20 C -0.06 -3.99 5.49 84.86 0.47 -3.53 16 21 N -0.95 -61.86 10.31 21.65 0.22 -61.63 16 22 Si 0.96 50.39 29.55 68.60 2.03 52.42 16 23 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 24 H -0.30 -15.77 7.11 99.48 0.71 -15.06 16 25 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 26 C 0.12 5.20 6.18 86.86 0.54 5.74 16 27 H 0.03 0.72 7.22 -2.39 -0.02 0.71 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.11 1.63 7.91 -2.39 -0.02 1.61 16 31 H 0.08 1.74 5.29 -2.39 -0.01 1.73 16 32 H 0.14 5.74 8.06 -2.91 -0.02 5.71 16 33 H 0.18 4.20 8.06 -2.91 -0.02 4.18 16 34 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 39 H 0.01 0.82 5.85 -2.39 -0.01 0.81 16 40 H -0.01 -0.76 7.50 -2.39 -0.02 -0.78 16 41 H 0.23 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -81.01 341.96 6.04 -74.97 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.01 Total: 3.96 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 6.67 Total: 18.46 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -3.02 Total: -115.60 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.64 Total: -34.20 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.03 Total: 52.42 kcal Total: -81.01 6.04 -74.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033996440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.986 kcal (2) G-P(sol) polarization free energy of solvation -81.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds