Wall clock time and date at job start Tue Mar 31 2020 10:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46962 * 2 1 4 4 C 1.34781 * 119.99954 * 273.15344 * 3 2 1 5 5 O 1.21772 * 119.99777 * 184.60742 * 4 3 2 6 6 C 1.46125 * 119.99784 * 4.61394 * 4 3 2 7 7 C 1.37828 * 126.03022 * 184.96494 * 6 4 3 8 8 C 1.39909 * 106.68097 * 179.84721 * 7 6 4 9 9 C 1.36094 * 107.17365 * 0.41148 * 8 7 6 10 10 O 1.35363 * 125.57898 * 179.74211 * 9 8 7 11 11 C 1.42901 * 116.99917 * 179.97438 * 10 9 8 12 12 O 1.34013 * 108.84141 * 359.73876 * 9 8 7 13 13 C 1.46502 * 120.00184 * 93.15814 * 3 2 1 14 14 H 1.08998 * 110.63598 * 1.68696 * 13 3 2 15 15 C 1.55158 * 110.72121 * 125.02339 * 13 3 2 16 16 C 1.54909 * 101.57967 * 153.86759 * 15 13 3 17 17 N 1.47422 * 104.83196 * 322.98638 * 16 15 13 18 18 C 1.36935 * 125.64831 * 204.16488 * 17 16 15 19 19 H 1.08004 * 119.99955 * 157.91602 * 18 17 16 20 20 C 1.38808 * 120.00492 * 337.91499 * 18 17 16 21 21 N 1.31616 * 120.00390 * 158.85344 * 20 18 17 22 22 Si 1.86802 * 119.99785 * 338.85783 * 20 18 17 23 23 H 1.48500 * 109.47054 * 84.15166 * 22 20 18 24 24 H 1.48491 * 109.47532 * 204.15406 * 22 20 18 25 25 H 1.48506 * 109.47091 * 324.15726 * 22 20 18 26 26 C 1.47028 * 108.70333 * 24.13346 * 17 16 15 27 27 H 1.08995 * 109.46654 * 299.99772 * 1 2 3 28 28 H 1.08996 * 109.47306 * 60.00076 * 1 2 3 29 29 H 1.09001 * 109.46860 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47723 * 120.00263 * 2 1 3 31 31 H 1.08999 * 109.47358 * 240.00336 * 2 1 3 32 32 H 1.08009 * 126.66332 * 359.96719 * 7 6 4 33 33 H 1.07994 * 126.41639 * 180.17537 * 8 7 6 34 34 H 1.09006 * 109.47073 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.47052 * 299.99678 * 11 10 9 36 36 H 1.08993 * 109.47549 * 60.00258 * 11 10 9 37 37 H 1.09009 * 111.00197 * 271.93780 * 15 13 3 38 38 H 1.08992 * 111.00447 * 35.78968 * 15 13 3 39 39 H 1.09004 * 110.36203 * 204.15323 * 16 15 13 40 40 H 1.09000 * 110.36665 * 81.82789 * 16 15 13 41 41 H 0.96996 * 120.00100 * 180.02562 * 21 20 18 42 42 H 1.09004 * 109.88060 * 239.52134 * 26 17 16 43 43 H 1.08995 * 109.88365 * 118.35876 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1824 2.0380 -1.1655 5 8 2.6669 3.1552 -1.1718 6 6 1.7787 1.4095 -2.4214 7 6 1.9760 1.9231 -3.6851 8 6 1.4392 0.9950 -4.5840 9 6 0.9330 -0.0314 -3.8476 10 8 0.3202 -1.1308 -4.3456 11 6 -0.1429 -2.0989 -3.4020 12 8 1.1406 0.2244 -2.5485 13 6 2.3284 2.0486 1.2668 14 1 2.1701 1.3718 2.1064 15 6 3.7821 2.5909 1.2602 16 6 3.6815 3.7626 2.2685 17 7 2.3515 4.3523 2.0303 18 6 1.9861 5.6400 2.3191 19 1 1.1479 6.0909 1.8086 20 6 2.6930 6.3659 3.2679 21 7 2.6408 7.6810 3.2634 22 14 3.7183 5.4763 4.5510 23 1 5.0527 5.1560 3.9834 24 1 3.8834 6.3463 5.7430 25 1 3.0341 4.2190 4.9467 26 6 1.4826 3.3290 1.4307 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.4540 2.8592 -3.9334 33 1 1.4254 1.0793 -5.6606 34 1 -0.6136 -2.9269 -3.9322 35 1 0.7002 -2.4718 -2.8205 36 1 -0.8691 -1.6364 -2.7336 37 1 4.4833 1.8332 1.6104 38 1 4.0604 2.9505 0.2697 39 1 4.4626 4.4978 2.0748 40 1 3.7542 3.3908 3.2905 41 1 3.1350 8.1883 3.9262 42 1 1.1294 3.6672 0.4565 43 1 0.6348 3.1318 2.0867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033996441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:56 Heat of formation + Delta-G solvation = -6.323997 kcal Electronic energy + Delta-G solvation = -26653.412891 eV Core-core repulsion = 22895.874598 eV Total energy + Delta-G solvation = -3757.538293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.95811 -40.05847 -38.80259 -37.05166 -35.74694 -33.32786 -32.42238 -30.68095 -29.98212 -29.13355 -28.06482 -27.13887 -24.45889 -23.72217 -22.39067 -22.18722 -21.18018 -20.48947 -19.47887 -18.70428 -17.49975 -17.15142 -16.81960 -15.91616 -15.64976 -15.48496 -15.17756 -14.84284 -14.53897 -14.13904 -13.85322 -13.41945 -13.38056 -13.23781 -12.93489 -12.74134 -12.70810 -12.58491 -12.36184 -12.04008 -11.89905 -11.68565 -11.31304 -11.21240 -10.99959 -10.88577 -10.83765 -10.16910 -10.12977 -9.97794 -9.56482 -9.31857 -8.61321 -8.52139 -8.20085 -6.87718 -5.84295 -3.15379 0.97699 1.99612 2.21191 2.79130 3.08930 3.25879 3.42820 3.53359 3.56869 4.44456 4.61535 4.64282 4.66045 4.66888 4.80805 4.96336 5.03293 5.07198 5.22585 5.25595 5.30834 5.41154 5.45644 5.48534 5.58493 5.60518 5.66617 5.68466 5.95976 6.06289 6.11652 6.15950 6.24139 6.37642 6.44295 6.61027 6.72941 6.87851 6.93772 7.02988 7.43938 7.86522 8.22023 8.42896 8.95368 9.79695 10.30378 11.32426 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028575 B = 0.003663 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.634766 B = 7641.797024 C = 8060.529361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.598 3.402 5 O -0.488 6.488 6 C -0.092 4.092 7 C -0.087 4.087 8 C -0.238 4.238 9 C 0.199 3.801 10 O -0.264 6.264 11 C 0.020 3.980 12 O -0.180 6.180 13 C 0.135 3.865 14 H 0.095 0.905 15 C -0.147 4.147 16 C 0.118 3.882 17 N -0.601 5.601 18 C -0.234 4.234 19 H 0.088 0.912 20 C 0.021 3.979 21 N -0.911 5.911 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.303 1.303 25 H -0.278 1.278 26 C 0.133 3.867 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.108 0.892 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.022 0.978 41 H 0.262 0.738 42 H 0.042 0.958 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.928 -23.784 -13.066 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.386 3.614 5 O -0.364 6.364 6 C -0.142 4.142 7 C -0.107 4.107 8 C -0.258 4.258 9 C 0.102 3.898 10 O -0.178 6.178 11 C -0.075 4.075 12 O -0.081 6.081 13 C 0.032 3.968 14 H 0.113 0.887 15 C -0.186 4.186 16 C -0.007 4.007 17 N -0.328 5.328 18 C -0.361 4.361 19 H 0.106 0.894 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.715 3.285 23 H -0.212 1.212 24 H -0.231 1.231 25 H -0.204 1.204 26 C 0.007 3.993 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.127 0.873 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.785 -23.174 -12.892 26.787 hybrid contribution 0.354 -0.719 0.901 1.206 sum -3.431 -23.893 -11.991 26.952 Atomic orbital electron populations 1.22220 0.95753 1.01780 1.02892 1.21673 0.94800 0.82309 1.02900 1.47864 1.65438 1.13960 1.05894 1.16483 0.79198 0.84871 0.80861 1.91006 1.42955 1.17370 1.85046 1.22175 1.08821 0.86516 0.96675 1.22009 0.98851 1.00182 0.89688 1.20764 1.10018 0.94034 1.01008 1.20887 0.97191 0.89922 0.81755 1.86396 1.71568 1.27629 1.32213 1.23166 1.00001 0.90855 0.93454 1.84250 1.61849 1.36287 1.25717 1.22237 0.96659 0.94549 0.83366 0.88684 1.23244 0.94632 0.98044 1.02701 1.21871 0.89888 0.93956 0.95003 1.44545 1.05880 1.08876 1.73489 1.18615 1.15928 0.84682 1.16878 0.89400 1.25057 0.98885 0.95171 0.98584 1.69839 1.44555 1.04617 1.36511 0.86901 0.80346 0.78861 0.82359 1.21182 1.23146 1.20354 1.21565 0.92708 0.87455 0.97570 0.91912 0.92273 0.91951 0.90086 0.90114 0.81516 0.82171 0.87345 0.91873 0.91751 0.92058 0.88529 0.92248 0.96076 0.92811 0.93968 0.95372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.69 37.16 0.36 -1.22 16 2 C 0.11 1.09 5.67 -4.04 -0.02 1.07 16 3 N -0.60 -8.69 2.54 -165.75 -0.42 -9.11 16 4 C 0.60 9.80 6.69 -13.09 -0.09 9.71 16 5 O -0.49 -9.98 13.25 5.12 0.07 -9.92 16 6 C -0.09 -1.25 6.59 -36.57 -0.24 -1.49 16 7 C -0.09 -1.08 10.67 -39.11 -0.42 -1.49 16 8 C -0.24 -2.53 10.89 -39.73 -0.43 -2.96 16 9 C 0.20 2.09 7.86 29.96 0.24 2.32 16 10 O -0.26 -2.31 10.55 -41.01 -0.43 -2.74 16 11 C 0.02 0.10 10.74 101.05 1.09 1.19 16 12 O -0.18 -2.01 5.25 -19.26 -0.10 -2.11 16 13 C 0.13 2.28 3.45 -66.10 -0.23 2.06 16 14 H 0.10 1.38 7.82 -51.93 -0.41 0.98 16 15 C -0.15 -2.74 6.39 -24.58 -0.16 -2.90 16 16 C 0.12 2.74 4.71 -2.53 -0.01 2.73 16 17 N -0.60 -15.58 3.16 -170.07 -0.54 -16.12 16 18 C -0.23 -7.03 10.56 -15.06 -0.16 -7.19 16 19 H 0.09 2.82 8.06 -52.48 -0.42 2.40 16 20 C 0.02 0.65 5.44 -17.43 -0.09 0.55 16 21 N -0.91 -29.23 13.97 55.49 0.78 -28.45 16 22 Si 0.88 23.39 24.30 -169.99 -4.13 19.26 16 23 H -0.28 -7.27 6.58 56.52 0.37 -6.90 16 24 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 25 H -0.28 -7.15 6.74 56.52 0.38 -6.77 16 26 C 0.13 2.87 6.51 -3.06 -0.02 2.85 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.64 6.65 -51.93 -0.35 0.29 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 31 H 0.08 0.77 5.71 -51.93 -0.30 0.48 16 32 H 0.17 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 38 H 0.10 1.96 5.65 -51.93 -0.29 1.67 16 39 H 0.06 1.48 6.97 -51.93 -0.36 1.12 16 40 H 0.02 0.50 5.50 -51.93 -0.29 0.21 16 41 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 42 H 0.04 0.98 6.42 -51.93 -0.33 0.65 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -35.48 341.37 -5.97 -41.46 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.14 Total: -2.61 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -0.19 Total: 5.21 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.18 Total: -53.68 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.47 Total: -14.77 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.13 Total: 19.26 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.48 -5.97 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033996441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.132 kcal (2) G-P(sol) polarization free energy of solvation -35.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds