Wall clock time and date at job start Tue Mar 31 2020 10:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46962 * 2 1 4 4 C 1.34781 * 119.99954 * 273.15344 * 3 2 1 5 5 O 1.21772 * 119.99777 * 184.60742 * 4 3 2 6 6 C 1.46125 * 119.99784 * 4.61394 * 4 3 2 7 7 C 1.37828 * 126.03022 * 184.96494 * 6 4 3 8 8 C 1.39909 * 106.68097 * 179.84721 * 7 6 4 9 9 C 1.36094 * 107.17365 * 0.41148 * 8 7 6 10 10 O 1.35363 * 125.57898 * 179.74211 * 9 8 7 11 11 C 1.42901 * 116.99917 * 179.97438 * 10 9 8 12 12 O 1.34013 * 108.84141 * 359.73876 * 9 8 7 13 13 C 1.46502 * 120.00184 * 93.15814 * 3 2 1 14 14 H 1.08998 * 110.63598 * 1.68696 * 13 3 2 15 15 C 1.55158 * 110.72121 * 125.02339 * 13 3 2 16 16 C 1.54909 * 101.57967 * 153.86759 * 15 13 3 17 17 N 1.47422 * 104.83196 * 322.98638 * 16 15 13 18 18 C 1.36935 * 125.64831 * 204.16488 * 17 16 15 19 19 H 1.08004 * 119.99955 * 157.91602 * 18 17 16 20 20 C 1.38808 * 120.00492 * 337.91499 * 18 17 16 21 21 N 1.31616 * 120.00390 * 158.85344 * 20 18 17 22 22 Si 1.86802 * 119.99785 * 338.85783 * 20 18 17 23 23 H 1.48500 * 109.47054 * 84.15166 * 22 20 18 24 24 H 1.48491 * 109.47532 * 204.15406 * 22 20 18 25 25 H 1.48506 * 109.47091 * 324.15726 * 22 20 18 26 26 C 1.47028 * 108.70333 * 24.13346 * 17 16 15 27 27 H 1.08995 * 109.46654 * 299.99772 * 1 2 3 28 28 H 1.08996 * 109.47306 * 60.00076 * 1 2 3 29 29 H 1.09001 * 109.46860 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47723 * 120.00263 * 2 1 3 31 31 H 1.08999 * 109.47358 * 240.00336 * 2 1 3 32 32 H 1.08009 * 126.66332 * 359.96719 * 7 6 4 33 33 H 1.07994 * 126.41639 * 180.17537 * 8 7 6 34 34 H 1.09006 * 109.47073 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.47052 * 299.99678 * 11 10 9 36 36 H 1.08993 * 109.47549 * 60.00258 * 11 10 9 37 37 H 1.09009 * 111.00197 * 271.93780 * 15 13 3 38 38 H 1.08992 * 111.00447 * 35.78968 * 15 13 3 39 39 H 1.09004 * 110.36203 * 204.15323 * 16 15 13 40 40 H 1.09000 * 110.36665 * 81.82789 * 16 15 13 41 41 H 0.96996 * 120.00100 * 180.02562 * 21 20 18 42 42 H 1.09004 * 109.88060 * 239.52134 * 26 17 16 43 43 H 1.08995 * 109.88365 * 118.35876 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1824 2.0380 -1.1655 5 8 2.6669 3.1552 -1.1718 6 6 1.7787 1.4095 -2.4214 7 6 1.9760 1.9231 -3.6851 8 6 1.4392 0.9950 -4.5840 9 6 0.9330 -0.0314 -3.8476 10 8 0.3202 -1.1308 -4.3456 11 6 -0.1429 -2.0989 -3.4020 12 8 1.1406 0.2244 -2.5485 13 6 2.3284 2.0486 1.2668 14 1 2.1701 1.3718 2.1064 15 6 3.7821 2.5909 1.2602 16 6 3.6815 3.7626 2.2685 17 7 2.3515 4.3523 2.0303 18 6 1.9861 5.6400 2.3191 19 1 1.1479 6.0909 1.8086 20 6 2.6930 6.3659 3.2679 21 7 2.6408 7.6810 3.2634 22 14 3.7183 5.4763 4.5510 23 1 5.0527 5.1560 3.9834 24 1 3.8834 6.3463 5.7430 25 1 3.0341 4.2190 4.9467 26 6 1.4826 3.3290 1.4307 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.4540 2.8592 -3.9334 33 1 1.4254 1.0793 -5.6606 34 1 -0.6136 -2.9269 -3.9322 35 1 0.7002 -2.4718 -2.8205 36 1 -0.8691 -1.6364 -2.7336 37 1 4.4833 1.8332 1.6104 38 1 4.0604 2.9505 0.2697 39 1 4.4626 4.4978 2.0748 40 1 3.7542 3.3908 3.2905 41 1 3.1350 8.1883 3.9262 42 1 1.1294 3.6672 0.4565 43 1 0.6348 3.1318 2.0867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033996441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:55 Heat of formation + Delta-G solvation = -31.147686 kcal Electronic energy + Delta-G solvation = -26654.489327 eV Core-core repulsion = 22895.874598 eV Total energy + Delta-G solvation = -3758.614729 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.84497 -41.32254 -39.52579 -38.65859 -36.97887 -34.51081 -34.20725 -32.19344 -31.00630 -30.54666 -29.36813 -28.01920 -26.22488 -24.81968 -23.44676 -23.05184 -22.73383 -22.06978 -20.59962 -19.54789 -19.05505 -18.35075 -18.00307 -17.33331 -17.07135 -16.54123 -16.31468 -16.18707 -15.55925 -15.45127 -15.13422 -14.99249 -14.76652 -14.25757 -14.18270 -13.97810 -13.86617 -13.67576 -13.66628 -13.10048 -12.98264 -12.89570 -12.75968 -12.58729 -12.51318 -12.40105 -12.11604 -12.05188 -11.67854 -11.55451 -11.05679 -10.84841 -10.81100 -9.79056 -9.11780 -9.00202 -8.19148 -5.48442 -0.01827 1.10412 1.31865 1.32637 1.38330 1.49531 1.82041 2.11159 2.26088 2.42486 3.01571 3.38674 3.49602 3.72883 3.76968 3.87869 4.01007 4.17660 4.26599 4.32433 4.34594 4.36051 4.36931 4.46714 4.54495 4.57037 4.71264 4.75200 4.78898 4.86053 4.92161 4.94906 4.97719 5.02755 5.24094 5.25323 5.35576 5.45806 5.65006 5.69291 6.08732 6.11918 6.31949 6.75367 7.03299 7.51991 8.09904 9.01657 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028575 B = 0.003663 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.634766 B = 7641.797024 C = 8060.529361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.594 5.594 4 C 0.595 3.405 5 O -0.545 6.545 6 C -0.117 4.117 7 C -0.087 4.087 8 C -0.246 4.246 9 C 0.213 3.787 10 O -0.266 6.266 11 C 0.008 3.992 12 O -0.170 6.170 13 C 0.150 3.850 14 H 0.136 0.864 15 C -0.136 4.136 16 C 0.111 3.889 17 N -0.621 5.621 18 C -0.238 4.238 19 H 0.043 0.957 20 C -0.039 4.039 21 N -0.960 5.960 22 Si 0.957 3.043 23 H -0.269 1.269 24 H -0.304 1.304 25 H -0.259 1.259 26 C 0.131 3.869 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.163 0.837 33 H 0.182 0.818 34 H 0.136 0.864 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.037 0.963 41 H 0.264 0.736 42 H 0.014 0.986 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -28.637 -12.790 31.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.019 4.019 3 N -0.325 5.325 4 C 0.384 3.616 5 O -0.425 6.425 6 C -0.167 4.167 7 C -0.108 4.108 8 C -0.265 4.265 9 C 0.116 3.884 10 O -0.180 6.180 11 C -0.085 4.085 12 O -0.071 6.071 13 C 0.047 3.953 14 H 0.154 0.846 15 C -0.175 4.175 16 C -0.014 4.014 17 N -0.347 5.347 18 C -0.367 4.367 19 H 0.061 0.939 20 C -0.233 4.233 21 N -0.607 5.607 22 Si 0.784 3.216 23 H -0.195 1.195 24 H -0.232 1.232 25 H -0.183 1.183 26 C 0.005 3.995 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.181 0.819 33 H 0.199 0.801 34 H 0.154 0.846 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.538 -28.124 -12.630 31.032 hybrid contribution 0.122 0.720 0.617 0.956 sum -3.415 -27.404 -12.013 30.115 Atomic orbital electron populations 1.22189 0.95126 1.03475 1.01422 1.22015 0.95250 0.79817 1.04867 1.47910 1.64825 1.15355 1.04419 1.16808 0.78358 0.84324 0.82072 1.90976 1.45653 1.19790 1.86079 1.21610 1.11310 0.88014 0.95765 1.22182 0.98225 1.00333 0.90032 1.20996 1.09954 0.93648 1.01927 1.21101 0.95776 0.90205 0.81332 1.86433 1.70950 1.27407 1.33214 1.23544 1.00641 0.90665 0.93688 1.84211 1.61533 1.35158 1.26168 1.22087 0.94190 0.93266 0.85783 0.84620 1.23145 0.96786 0.97254 1.00287 1.22003 0.87490 0.94867 0.97003 1.44619 1.08186 1.08429 1.73512 1.18485 1.14712 0.86954 1.16549 0.93929 1.25802 1.01091 0.95772 1.00643 1.69987 1.46704 1.06471 1.37526 0.85749 0.79210 0.77978 0.78613 1.19496 1.23246 1.18339 1.21667 0.93343 0.88809 0.95695 0.93022 0.94135 0.88613 0.87087 0.89095 0.81894 0.80054 0.84602 0.90816 0.91364 0.87685 0.90721 0.94977 0.94593 0.92745 0.96781 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.69 71.98 0.70 -1.88 16 2 C 0.10 1.70 5.67 86.38 0.49 2.19 16 3 N -0.59 -16.13 2.54 -796.49 -2.03 -18.15 16 4 C 0.59 19.57 6.69 86.29 0.58 20.15 16 5 O -0.55 -23.40 13.25 -4.58 -0.06 -23.46 16 6 C -0.12 -3.13 6.59 24.22 0.16 -2.97 16 7 C -0.09 -2.16 10.67 22.58 0.24 -1.92 16 8 C -0.25 -4.84 10.89 22.18 0.24 -4.60 16 9 C 0.21 3.99 7.86 67.32 0.53 4.52 16 10 O -0.27 -3.83 10.55 -64.33 -0.68 -4.51 16 11 C 0.01 0.05 10.74 113.37 1.22 1.27 16 12 O -0.17 -3.46 5.25 13.50 0.07 -3.39 16 13 C 0.15 4.75 3.45 46.18 0.16 4.91 16 14 H 0.14 3.26 7.82 -2.39 -0.02 3.24 16 15 C -0.14 -4.79 6.39 31.99 0.20 -4.59 16 16 C 0.11 5.03 4.71 86.86 0.41 5.44 16 17 N -0.62 -32.80 3.16 -691.98 -2.19 -34.99 16 18 C -0.24 -15.04 10.56 84.03 0.89 -14.16 16 19 H 0.04 2.97 8.06 -2.91 -0.02 2.95 16 20 C -0.04 -2.44 5.44 84.86 0.46 -1.98 16 21 N -0.96 -64.22 13.97 21.65 0.30 -63.92 16 22 Si 0.96 48.73 24.30 68.60 1.67 50.40 16 23 H -0.27 -12.94 6.58 99.48 0.65 -12.28 16 24 H -0.30 -15.42 7.11 99.48 0.71 -14.72 16 25 H -0.26 -12.28 6.74 99.48 0.67 -11.61 16 26 C 0.13 5.67 6.51 86.73 0.56 6.24 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.04 0.79 6.65 -2.39 -0.02 0.78 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.11 1.27 7.87 -2.39 -0.02 1.25 16 31 H 0.09 1.40 5.71 -2.39 -0.01 1.38 16 32 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.18 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.14 0.16 8.14 -2.38 -0.02 0.14 16 35 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 38 H 0.07 3.03 5.65 -2.39 -0.01 3.02 16 39 H 0.03 1.60 6.97 -2.39 -0.02 1.59 16 40 H 0.04 1.55 5.50 -2.39 -0.01 1.54 16 41 H 0.26 16.56 8.31 -92.71 -0.77 15.79 16 42 H 0.01 0.69 6.42 -2.38 -0.02 0.67 16 43 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -83.10 341.37 4.86 -78.24 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.93 Total: 7.13 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.84 Total: 12.63 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -3.91 Total: -117.06 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.67 Total: -31.35 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.67 Total: 50.40 kcal Total: -83.10 4.86 -78.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033996441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.097 kcal (2) G-P(sol) polarization free energy of solvation -83.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds