Wall clock time and date at job start Tue Mar 31 2020 09:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47596 * 2 1 4 4 C 1.50700 * 109.46794 * 240.00136 * 2 1 3 5 5 O 1.21290 * 120.00332 * 247.04208 * 4 2 1 6 6 N 1.34782 * 120.00086 * 67.32485 * 4 2 1 7 7 C 1.46503 * 119.99961 * 182.99831 * 6 4 2 8 8 C 1.46496 * 119.99518 * 2.99213 * 6 4 2 9 9 H 1.08993 * 110.64817 * 356.55201 * 8 6 4 10 10 C 1.54331 * 110.71591 * 119.69242 * 8 6 4 11 11 N 1.47313 * 107.11920 * 140.42555 * 10 8 6 12 12 C 1.36936 * 125.61545 * 181.17557 * 11 10 8 13 13 H 1.08002 * 119.99918 * 0.17249 * 12 11 10 14 14 C 1.38817 * 120.00218 * 180.16431 * 12 11 10 15 15 N 1.31619 * 120.00016 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99814 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47104 * 60.00331 * 16 14 12 18 18 H 1.48501 * 109.46859 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47254 * 299.99945 * 16 14 12 20 20 C 1.47423 * 108.73914 * 1.30287 * 11 10 8 21 21 C 1.54906 * 104.83022 * 335.71109 * 20 11 10 22 22 H 1.08999 * 111.01012 * 278.93753 * 21 20 11 23 23 O 1.42899 * 111.00652 * 155.08450 * 21 20 11 24 24 C 1.50707 * 109.47229 * 120.00611 * 2 1 3 25 25 C 1.34510 * 125.78710 * 239.99369 * 24 2 1 26 26 C 1.41385 * 106.83901 * 179.97438 * 25 24 2 27 27 C 1.34514 * 106.84208 * 0.02562 * 26 25 24 28 28 O 1.34298 * 125.78712 * 59.68752 * 24 2 1 29 29 H 1.09004 * 109.46817 * 292.53646 * 1 2 3 30 30 H 1.09004 * 109.47028 * 52.53528 * 1 2 3 31 31 H 1.08998 * 109.47518 * 172.53905 * 1 2 3 32 32 H 1.08997 * 109.46776 * 84.77220 * 7 6 4 33 33 H 1.09002 * 109.46782 * 204.77007 * 7 6 4 34 34 H 1.08991 * 109.46997 * 324.77125 * 7 6 4 35 35 H 1.08999 * 109.87811 * 259.97181 * 10 8 6 36 36 H 1.08991 * 109.88302 * 21.13481 * 10 8 6 37 37 H 0.96996 * 119.99721 * 179.97438 * 15 14 12 38 38 H 1.09005 * 110.36436 * 216.87634 * 20 11 10 39 39 H 1.08998 * 110.36888 * 94.55015 * 20 11 10 40 40 H 0.96698 * 114.00030 * 67.80674 * 23 21 20 41 41 H 1.08001 * 126.58028 * 0.03888 * 25 24 2 42 42 H 1.08000 * 126.57743 * 179.97438 * 26 25 24 43 43 H 1.07995 * 125.78752 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.6206 -1.7656 -1.1239 6 7 1.8326 -0.1703 -2.4491 7 6 2.2623 -0.8920 -3.6495 8 6 1.1857 1.1382 -2.5733 9 1 0.8759 1.5080 -1.5959 10 6 2.1249 2.1479 -3.2665 11 7 1.2952 2.9598 -4.1734 12 6 1.7515 3.9572 -4.9932 13 1 2.8031 4.2026 -5.0113 14 6 0.8625 4.6529 -5.8011 15 7 -0.4192 4.3541 -5.7788 16 14 1.4852 6.0130 -6.9199 17 1 2.4756 5.4540 -7.8747 18 1 0.3452 6.5954 -7.6726 19 1 2.1295 7.0713 -6.1012 20 6 -0.1075 2.5232 -4.0503 21 6 -0.0249 1.0626 -3.5408 22 1 0.1732 0.3731 -4.3614 23 8 -1.2164 0.6956 -2.8424 24 6 2.0323 -0.7106 1.2304 25 6 2.8090 -0.1722 2.1876 26 6 3.0378 -1.1851 3.1472 27 6 2.3877 -2.2820 2.7186 28 8 1.7757 -1.9869 1.5600 29 1 -0.3633 0.3939 0.9492 30 1 -0.3633 0.6251 -0.8157 31 1 -0.3634 -1.0189 -0.1334 32 1 1.4865 -1.5977 -3.9464 33 1 2.4359 -0.1816 -4.4578 34 1 3.1841 -1.4334 -3.4374 35 1 2.5982 2.7863 -2.5205 36 1 2.8851 1.6152 -3.8376 37 1 -1.0404 4.8405 -6.3430 38 1 -0.6025 2.5589 -5.0208 39 1 -0.6372 3.1468 -3.3301 40 1 -1.9999 0.6355 -3.4060 41 1 3.1848 0.8399 2.2180 42 1 3.6230 -1.0955 4.0504 43 1 2.3592 -3.2365 3.2229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047524686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:34 Heat of formation + Delta-G solvation = -25.297588 kcal Electronic energy + Delta-G solvation = -26586.450029 eV Core-core repulsion = 22828.088979 eV Total energy + Delta-G solvation = -3758.361049 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.54583 -40.11269 -38.01748 -35.26619 -34.71699 -34.16904 -32.80236 -31.86123 -28.86779 -28.51781 -27.41217 -26.77103 -24.69189 -23.91903 -21.73449 -21.10437 -20.57601 -20.37485 -18.96084 -17.54904 -17.33986 -16.94100 -16.36708 -15.84320 -15.68829 -15.36755 -14.82908 -14.33894 -14.09377 -13.94471 -13.64009 -13.29141 -13.09593 -12.81858 -12.76419 -12.60016 -12.37817 -12.15125 -12.08179 -11.83542 -11.63325 -11.49105 -11.45217 -11.15993 -11.05816 -10.86831 -10.27512 -10.09700 -9.90173 -9.84582 -9.61336 -9.34781 -8.80417 -8.44776 -8.41201 -7.03245 -5.80773 -3.24354 1.77245 2.61210 2.71083 3.00670 3.18238 3.32766 3.37710 3.38418 4.30620 4.46292 4.52109 4.54269 4.94367 4.99828 5.11325 5.12464 5.20256 5.27116 5.37930 5.46542 5.53487 5.71807 5.73786 5.75947 5.79338 5.86594 5.90415 5.95676 6.00127 6.04263 6.08735 6.33397 6.41256 6.48522 6.52816 6.68632 7.20698 7.21627 7.42879 7.51958 7.64000 8.02059 8.16507 8.27347 9.04290 9.64528 10.25658 11.22846 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.025406 B = 0.003457 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.840911 B = 8097.563500 C = 8253.882248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.032 4.032 3 H 0.122 0.878 4 C 0.522 3.478 5 O -0.537 6.537 6 N -0.597 5.597 7 C 0.084 3.916 8 C 0.122 3.878 9 H 0.109 0.891 10 C 0.126 3.874 11 N -0.598 5.598 12 C -0.227 4.227 13 H 0.080 0.920 14 C -0.007 4.007 15 N -0.922 5.922 16 Si 0.918 3.082 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.284 1.284 20 C 0.128 3.872 21 C 0.065 3.935 22 H 0.064 0.936 23 O -0.565 6.565 24 C 0.021 3.979 25 C -0.213 4.213 26 C -0.216 4.216 27 C -0.044 4.044 28 O -0.158 6.158 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.033 0.967 36 H 0.037 0.963 37 H 0.255 0.745 38 H 0.112 0.888 39 H 0.026 0.974 40 H 0.378 0.622 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.192 -9.514 11.597 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.054 4.054 3 H 0.140 0.860 4 C 0.309 3.691 5 O -0.414 6.414 6 N -0.329 5.329 7 C -0.058 4.058 8 C 0.018 3.982 9 H 0.127 0.873 10 C -0.001 4.001 11 N -0.326 5.326 12 C -0.355 4.355 13 H 0.098 0.902 14 C -0.203 4.203 15 N -0.570 5.570 16 Si 0.748 3.252 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.211 1.211 20 C 0.003 3.997 21 C 0.005 3.995 22 H 0.082 0.918 23 O -0.371 6.371 24 C -0.030 4.030 25 C -0.232 4.232 26 C -0.235 4.235 27 C -0.112 4.112 28 O -0.053 6.053 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.130 0.870 39 H 0.044 0.956 40 H 0.226 0.774 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.657 -10.138 11.808 15.651 hybrid contribution 0.151 0.921 -0.830 1.249 sum 1.808 -9.217 10.978 14.448 Atomic orbital electron populations 1.22045 0.90377 1.04271 1.04351 1.19945 0.99014 0.98968 0.87426 0.86039 1.20303 0.79110 0.85437 0.84208 1.90698 1.41486 1.22880 1.86289 1.47759 1.59363 1.19796 1.05933 1.21625 1.00224 0.96888 0.87108 1.22520 0.92393 0.82269 1.01030 0.87286 1.21670 0.93505 0.91803 0.93122 1.44320 1.02647 1.39747 1.45923 1.19040 0.93227 1.08443 1.14827 0.90221 1.24797 0.95436 0.99921 1.00153 1.69724 1.01333 1.43266 1.42723 0.86109 0.77430 0.81425 0.80266 1.21044 1.21492 1.21069 1.22572 0.87143 0.87365 1.02663 1.23732 0.83976 0.98982 0.92856 0.91849 1.86303 1.19013 1.92257 1.39483 1.21657 1.01212 0.82727 0.97388 1.21544 1.04133 1.01413 0.96140 1.21747 1.05865 0.93594 1.02337 1.23990 0.99350 1.00675 0.87166 1.84050 1.58476 1.27812 1.34937 0.91406 0.88208 0.91794 0.92888 0.90119 0.90983 0.94868 0.94539 0.93465 0.87012 0.95623 0.77421 0.83502 0.83644 0.78402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.79 37.16 0.33 -1.68 16 2 C -0.03 -0.45 2.27 -92.92 -0.21 -0.67 16 3 H 0.12 1.50 7.29 -51.93 -0.38 1.12 16 4 C 0.52 8.65 6.96 -10.98 -0.08 8.57 16 5 O -0.54 -10.46 15.38 -4.26 -0.07 -10.52 16 6 N -0.60 -9.42 2.88 -171.83 -0.49 -9.92 16 7 C 0.08 1.23 8.87 59.85 0.53 1.76 16 8 C 0.12 2.00 2.31 -66.09 -0.15 1.85 16 9 H 0.11 1.70 4.36 -51.93 -0.23 1.47 16 10 C 0.13 2.41 6.78 -2.90 -0.02 2.39 16 11 N -0.60 -14.02 3.40 -169.84 -0.58 -14.59 16 12 C -0.23 -5.92 10.28 -15.06 -0.15 -6.07 16 13 H 0.08 2.01 7.83 -52.49 -0.41 1.59 16 14 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 15 N -0.92 -25.07 10.09 55.49 0.56 -24.51 16 16 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 C 0.13 2.80 5.62 -2.53 -0.01 2.78 16 21 C 0.07 1.12 3.96 -24.58 -0.10 1.02 16 22 H 0.06 1.09 7.06 -51.93 -0.37 0.72 16 23 O -0.57 -8.46 11.61 -35.23 -0.41 -8.87 16 24 C 0.02 0.31 5.25 -35.62 -0.19 0.13 16 25 C -0.21 -2.76 10.78 -39.70 -0.43 -3.19 16 26 C -0.22 -2.51 10.91 -39.70 -0.43 -2.94 16 27 C -0.04 -0.51 12.09 29.42 0.36 -0.16 16 28 O -0.16 -2.39 10.24 -4.11 -0.04 -2.44 16 29 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 30 H 0.10 1.39 3.80 -51.93 -0.20 1.19 16 31 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.18 6.61 -51.93 -0.34 0.84 16 34 H 0.07 1.06 7.54 -51.93 -0.39 0.66 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.70 6.50 -51.93 -0.34 0.36 16 37 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.11 2.75 5.87 -51.93 -0.30 2.44 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.38 4.40 9.12 45.56 0.42 4.81 16 41 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.20 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -31.66 344.00 -6.58 -38.25 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.06 Total: 8.00 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.66 Total: 3.50 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.51 Total: -49.03 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.52 Total: -21.83 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.66 -6.58 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047524686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.951 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds