Wall clock time and date at job start Tue Mar 31 2020 09:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47105 * 2 1 4 4 C 1.50698 * 109.47101 * 120.00258 * 2 1 3 5 5 O 1.21282 * 119.99863 * 110.05050 * 4 2 1 6 6 N 1.34779 * 119.99700 * 290.05399 * 4 2 1 7 7 C 1.46504 * 119.99517 * 184.16706 * 6 4 2 8 8 C 1.46497 * 120.00248 * 4.16153 * 6 4 2 9 9 H 1.09002 * 110.88809 * 4.50592 * 8 6 4 10 10 C 1.55128 * 110.93711 * 128.58354 * 8 6 4 11 11 N 1.47429 * 104.72256 * 155.28918 * 10 8 6 12 12 C 1.36932 * 125.64644 * 155.81369 * 11 10 8 13 13 H 1.08000 * 120.00379 * 6.89908 * 12 11 10 14 14 C 1.38817 * 119.99844 * 186.90327 * 12 11 10 15 15 N 1.31625 * 119.99708 * 10.64193 * 14 12 11 16 16 Si 1.86798 * 120.00178 * 190.65019 * 14 12 11 17 17 H 1.48499 * 109.47137 * 265.03538 * 16 14 12 18 18 H 1.48499 * 109.46759 * 25.03465 * 16 14 12 19 19 H 1.48499 * 109.47029 * 145.03021 * 16 14 12 20 20 C 1.47026 * 108.69903 * 335.55092 * 11 10 8 21 21 C 1.54317 * 107.27432 * 1.28614 * 20 11 10 22 22 H 1.08998 * 110.72402 * 263.83181 * 21 20 11 23 23 O 1.42904 * 110.72217 * 140.55514 * 21 20 11 24 24 C 1.50696 * 109.46842 * 240.00131 * 2 1 3 25 25 C 1.34515 * 125.78800 * 119.71745 * 24 2 1 26 26 C 1.41384 * 106.84016 * 179.89060 * 25 24 2 27 27 C 1.34515 * 106.84110 * 0.37025 * 26 25 24 28 28 O 1.34303 * 108.42202 * 359.77308 * 27 26 25 29 29 H 1.09007 * 109.47264 * 52.13357 * 1 2 3 30 30 H 1.09000 * 109.47635 * 172.13134 * 1 2 3 31 31 H 1.09005 * 109.47271 * 292.13317 * 1 2 3 32 32 H 1.09003 * 109.46570 * 273.46877 * 7 6 4 33 33 H 1.09001 * 109.47362 * 33.46589 * 7 6 4 34 34 H 1.08999 * 109.46966 * 153.47105 * 7 6 4 35 35 H 1.08997 * 110.50111 * 36.44470 * 10 8 6 36 36 H 1.09007 * 110.33858 * 274.04894 * 10 8 6 37 37 H 0.97004 * 119.99237 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.88066 * 120.70813 * 20 11 10 39 39 H 1.09001 * 109.88021 * 241.71211 * 20 11 10 40 40 H 0.96695 * 113.99706 * 61.45010 * 23 21 20 41 41 H 1.07999 * 126.58548 * 0.02562 * 25 24 2 42 42 H 1.07999 * 126.57966 * 180.12408 * 26 25 24 43 43 H 1.08002 * 125.79033 * 179.79221 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.5740 -1.7908 1.1282 6 7 1.8796 -0.1453 2.4444 7 6 2.4481 -0.7915 3.6299 8 6 1.1452 1.1152 2.5785 9 1 0.7214 1.4217 1.6221 10 6 0.0472 1.0039 3.6686 11 7 -0.1723 2.3894 4.1222 12 6 -1.3160 2.8667 4.7046 13 1 -2.1127 2.1864 4.9674 14 6 -1.4515 4.2249 4.9573 15 7 -0.5841 5.0776 4.4541 16 14 -2.8646 4.8425 6.0114 17 1 -3.9921 5.2529 5.1366 18 1 -3.3135 3.7585 6.9217 19 1 -2.4113 6.0068 6.8139 20 6 1.0425 3.1721 3.8513 21 6 2.0529 2.2278 3.1666 22 1 2.7482 1.8126 3.8961 23 8 2.7565 2.9089 2.1260 24 6 2.0323 -0.7104 -1.2305 25 6 2.8044 -0.1703 -2.1904 26 6 3.0377 -1.1847 -3.1474 27 6 2.3873 -2.2815 -2.7191 28 8 1.7801 -1.9884 -1.5576 29 1 -0.3634 0.6308 -0.8113 30 1 -0.3634 -1.0180 -0.1407 31 1 -0.3634 0.3872 0.9520 32 1 1.7385 -1.5204 4.0218 33 1 3.3753 -1.2965 3.3591 34 1 2.6532 -0.0386 4.3910 35 1 0.3923 0.3840 4.4961 36 1 -0.8690 0.5944 3.2431 37 1 -0.6791 6.0267 4.6304 38 1 0.8065 4.0055 3.1895 39 1 1.4576 3.5478 4.7865 40 1 3.2784 3.6631 2.4324 41 1 3.1768 0.8429 -2.2229 42 1 3.6222 -1.0948 -4.0510 43 1 2.3585 -3.2360 -3.2235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047524694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:38 Heat of formation + Delta-G solvation = -26.584375 kcal Electronic energy + Delta-G solvation = -26603.446082 eV Core-core repulsion = 22845.029233 eV Total energy + Delta-G solvation = -3758.416849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.52042 -40.10384 -38.05042 -35.27922 -34.70851 -34.18355 -32.78440 -31.85088 -28.87086 -28.52185 -27.34821 -26.95107 -24.58270 -23.99801 -21.70676 -21.13179 -20.58180 -20.38980 -18.97741 -17.54041 -17.22458 -16.98034 -16.35723 -15.87483 -15.74234 -15.14641 -14.83691 -14.37351 -14.23384 -14.15260 -13.49632 -13.25414 -12.94298 -12.80600 -12.73207 -12.60441 -12.53711 -12.36847 -12.09082 -11.80389 -11.52872 -11.51466 -11.47676 -11.33302 -10.88900 -10.86997 -10.26078 -10.14826 -9.95107 -9.85112 -9.58144 -9.40258 -8.81861 -8.44715 -8.37961 -7.00826 -5.84496 -3.23598 1.79292 2.62956 2.72773 3.02547 3.18353 3.32366 3.39041 3.40605 4.34453 4.51424 4.52885 4.54643 4.97749 5.02614 5.07615 5.13797 5.23045 5.27452 5.37419 5.46477 5.47660 5.67333 5.68375 5.74714 5.75639 5.81874 5.85563 5.93608 5.96917 5.98841 6.06328 6.20384 6.37305 6.50603 6.54658 6.66243 7.10096 7.23504 7.43660 7.50521 7.62534 8.03537 8.09257 8.27691 9.02657 9.64531 10.26597 11.23525 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.003577 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.116578 B = 7826.396349 C = 7968.414734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.032 4.032 3 H 0.130 0.870 4 C 0.524 3.476 5 O -0.537 6.537 6 N -0.598 5.598 7 C 0.086 3.914 8 C 0.116 3.884 9 H 0.117 0.883 10 C 0.130 3.870 11 N -0.596 5.596 12 C -0.235 4.235 13 H 0.081 0.919 14 C -0.004 4.004 15 N -0.916 5.916 16 Si 0.913 3.087 17 H -0.288 1.288 18 H -0.280 1.280 19 H -0.289 1.289 20 C 0.140 3.860 21 C 0.065 3.935 22 H 0.058 0.942 23 O -0.564 6.564 24 C 0.021 3.979 25 C -0.211 4.211 26 C -0.217 4.217 27 C -0.044 4.044 28 O -0.158 6.158 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.051 0.949 37 H 0.254 0.746 38 H 0.083 0.917 39 H 0.031 0.969 40 H 0.378 0.622 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.621 -8.775 -9.477 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.053 4.053 3 H 0.148 0.852 4 C 0.311 3.689 5 O -0.413 6.413 6 N -0.330 5.330 7 C -0.056 4.056 8 C 0.012 3.988 9 H 0.135 0.865 10 C 0.003 3.997 11 N -0.323 5.323 12 C -0.363 4.363 13 H 0.098 0.902 14 C -0.201 4.201 15 N -0.562 5.562 16 Si 0.743 3.257 17 H -0.215 1.215 18 H -0.205 1.205 19 H -0.216 1.216 20 C 0.014 3.986 21 C 0.005 3.995 22 H 0.076 0.924 23 O -0.370 6.370 24 C -0.031 4.031 25 C -0.230 4.230 26 C -0.236 4.236 27 C -0.112 4.112 28 O -0.053 6.053 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.225 0.775 41 H 0.166 0.834 42 H 0.163 0.837 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 6.367 -9.807 -9.630 15.148 hybrid contribution -0.192 1.054 0.837 1.359 sum 6.174 -8.753 -8.793 13.859 Atomic orbital electron populations 1.22030 0.91116 1.03621 1.04386 1.19956 0.98425 0.99624 0.87336 0.85201 1.20299 0.78973 0.85439 0.84164 1.90694 1.43583 1.20835 1.86225 1.47733 1.54592 1.23875 1.06821 1.21601 0.98892 0.97796 0.87302 1.22881 0.92295 0.81586 1.02072 0.86506 1.21878 0.95143 0.89347 0.93379 1.44233 1.12706 1.03906 1.71488 1.19036 0.93711 0.91357 1.32166 0.90154 1.24823 0.98844 0.95626 1.00775 1.69918 1.37533 1.01729 1.47064 0.86099 0.81317 0.78328 0.80000 1.21465 1.20534 1.21556 1.21991 0.84713 0.93324 0.98535 1.23525 0.93530 0.93409 0.89069 0.92449 1.86393 1.66526 1.48180 1.35876 1.21637 1.01459 0.82568 0.97404 1.21561 1.04004 1.01373 0.96043 1.21753 1.05822 0.93610 1.02394 1.23985 0.99420 1.00704 0.87112 1.84048 1.58807 1.27748 1.34712 0.90635 0.91475 0.89906 0.92535 0.91116 0.90802 0.95159 0.93091 0.93574 0.89942 0.95104 0.77479 0.83442 0.83658 0.78418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.66 37.16 0.32 -1.70 16 2 C -0.03 -0.47 2.28 -92.93 -0.21 -0.68 16 3 H 0.13 1.80 7.51 -51.93 -0.39 1.41 16 4 C 0.52 8.71 6.96 -10.99 -0.08 8.63 16 5 O -0.54 -10.40 15.40 -5.46 -0.08 -10.49 16 6 N -0.60 -9.37 2.91 -171.34 -0.50 -9.87 16 7 C 0.09 1.21 8.93 59.85 0.53 1.74 16 8 C 0.12 1.93 2.11 -65.66 -0.14 1.80 16 9 H 0.12 1.94 4.32 -51.93 -0.22 1.72 16 10 C 0.13 2.45 6.74 -2.41 -0.02 2.43 16 11 N -0.60 -13.94 3.39 -169.93 -0.58 -14.52 16 12 C -0.23 -6.11 10.25 -15.06 -0.15 -6.27 16 13 H 0.08 2.03 7.85 -52.49 -0.41 1.61 16 14 C 0.00 -0.10 5.42 -17.43 -0.09 -0.19 16 15 N -0.92 -25.20 10.57 55.49 0.59 -24.61 16 16 Si 0.91 20.99 29.57 -169.99 -5.03 15.96 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.14 3.06 5.28 -3.07 -0.02 3.05 16 21 C 0.07 1.12 3.88 -24.90 -0.10 1.03 16 22 H 0.06 0.94 6.48 -51.93 -0.34 0.60 16 23 O -0.56 -8.97 13.39 -35.23 -0.47 -9.44 16 24 C 0.02 0.31 5.29 -35.63 -0.19 0.12 16 25 C -0.21 -2.82 10.78 -39.70 -0.43 -3.24 16 26 C -0.22 -2.56 10.91 -39.70 -0.43 -2.99 16 27 C -0.04 -0.52 12.09 29.42 0.36 -0.17 16 28 O -0.16 -2.42 10.18 -5.32 -0.05 -2.47 16 29 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.08 1.14 5.35 -51.93 -0.28 0.86 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.99 7.59 -51.93 -0.39 0.59 16 34 H 0.07 0.97 6.41 -51.93 -0.33 0.64 16 35 H 0.03 0.56 6.96 -51.93 -0.36 0.20 16 36 H 0.05 0.95 7.99 -51.93 -0.41 0.53 16 37 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.08 2.05 6.67 -51.93 -0.35 1.70 16 39 H 0.03 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.38 4.66 9.11 45.56 0.42 5.07 16 41 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -32.15 347.52 -6.70 -38.85 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.17 Total: 7.79 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -0.64 Total: 3.56 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.49 Total: -49.00 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.61 Total: -22.40 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.15 -6.70 -38.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047524694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.262 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds