Wall clock time and date at job start Tue Mar 31 2020 09:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46900 * 2 1 4 4 C 1.52995 * 109.46700 * 240.00079 * 2 1 3 5 5 C 1.52999 * 109.47278 * 66.20797 * 4 2 1 6 6 F 1.39896 * 109.47211 * 54.23939 * 5 4 2 7 7 F 1.39910 * 109.46810 * 174.23401 * 5 4 2 8 8 F 1.39898 * 109.47095 * 294.23136 * 5 4 2 9 9 C 1.50698 * 109.46885 * 120.00194 * 2 1 3 10 10 O 1.21279 * 119.99950 * 120.00490 * 9 2 1 11 11 N 1.34783 * 120.00070 * 299.99371 * 9 2 1 12 12 C 1.46496 * 119.99968 * 179.97438 * 11 9 2 13 13 C 1.52999 * 109.46779 * 180.02562 * 12 11 9 14 14 C 1.53786 * 113.61638 * 274.13680 * 13 12 11 15 15 C 1.53951 * 87.02260 * 220.05214 * 14 13 12 16 16 N 1.46504 * 113.53638 * 270.81471 * 15 14 13 17 17 C 1.36937 * 119.99591 * 252.49656 * 16 15 14 18 18 H 1.07999 * 120.00218 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99649 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00316 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99793 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46966 * 89.99729 * 21 19 17 23 23 H 1.48496 * 109.46741 * 209.99468 * 21 19 17 24 24 H 1.48492 * 109.46916 * 329.99543 * 21 19 17 25 25 C 1.53787 * 113.61103 * 176.53225 * 13 12 11 26 26 H 1.09008 * 109.47293 * 292.57777 * 1 2 3 27 27 H 1.08999 * 109.47360 * 52.57768 * 1 2 3 28 28 H 1.09000 * 109.47272 * 172.58217 * 1 2 3 29 29 H 1.09009 * 109.46638 * 186.20788 * 4 2 1 30 30 H 1.08998 * 109.47157 * 306.20315 * 4 2 1 31 31 H 0.97003 * 119.99632 * 0.02562 * 11 9 2 32 32 H 1.08994 * 109.47291 * 300.00701 * 12 11 9 33 33 H 1.09000 * 109.46867 * 60.00933 * 12 11 9 34 34 H 1.08991 * 112.85409 * 45.33808 * 13 12 11 35 35 H 1.09003 * 113.61041 * 334.57390 * 14 13 12 36 36 H 1.09001 * 113.60904 * 105.47065 * 14 13 12 37 37 H 1.09001 * 113.74362 * 139.94539 * 15 14 13 38 38 H 0.96994 * 120.00081 * 72.48985 * 16 15 14 39 39 H 0.96998 * 119.99835 * 180.02562 * 20 19 17 40 40 H 1.08994 * 113.61726 * 254.52681 * 25 13 12 41 41 H 1.08996 * 113.61500 * 25.43878 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6612 0.0844 -2.4936 6 9 2.1292 1.3960 -2.3602 7 9 2.2389 -0.5041 -3.6238 8 9 0.2694 0.0979 -2.6347 9 6 2.0323 -0.7105 1.2304 10 8 2.7296 -1.6965 1.1191 11 7 1.7068 -0.2499 2.4546 12 6 2.1946 -0.9409 3.6507 13 6 1.6842 -0.2199 4.8999 14 6 2.5784 0.9495 5.3449 15 6 2.3274 0.4859 6.7913 16 7 1.1431 1.0937 7.4032 17 6 1.2879 2.0490 8.3736 18 1 2.2750 2.3541 8.6880 19 6 0.1658 2.6245 8.9538 20 7 -1.0372 2.2523 8.5709 21 14 0.3632 3.9272 10.2780 22 1 0.4195 5.2701 9.6467 23 1 -0.7922 3.8658 11.2088 24 1 1.6192 3.6812 11.0310 25 6 2.0718 -0.9168 6.2149 26 1 -0.3634 0.3946 0.9490 27 1 -0.3634 0.6245 -0.8161 28 1 -0.3634 -1.0190 -0.1327 29 1 3.1243 -0.8185 -1.1954 30 1 1.5887 -1.7118 -1.3065 31 1 1.1488 0.5386 2.5436 32 1 1.8308 -1.9684 3.6505 33 1 3.2846 -0.9413 3.6509 34 1 0.6271 0.0381 4.8376 35 1 3.6168 0.8500 5.0284 36 1 2.1586 1.9300 5.1205 37 1 3.2094 0.5417 7.4294 38 1 0.2566 0.8194 7.1210 39 1 -1.8212 2.6547 8.9761 40 1 1.2436 -1.4405 6.6921 41 1 2.9713 -1.5273 6.1369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100527650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:32 Heat of formation + Delta-G solvation = -176.370895 kcal Electronic energy + Delta-G solvation = -25296.564033 eV Core-core repulsion = 20989.795213 eV Total energy + Delta-G solvation = -4306.768820 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.46998 -47.95995 -47.92103 -40.19688 -38.63549 -35.30702 -34.79836 -33.24735 -30.35221 -29.48303 -27.40153 -25.14653 -25.06248 -23.80363 -22.79503 -21.67286 -20.30278 -19.00550 -18.89010 -18.37027 -17.86224 -17.39306 -16.61074 -16.11581 -15.80331 -15.18771 -14.92296 -14.80627 -14.52689 -14.40956 -14.29185 -14.10596 -14.08105 -13.95826 -13.64183 -13.43453 -13.10583 -12.92192 -12.51380 -12.30072 -11.98624 -11.97294 -11.80275 -11.66629 -11.43737 -11.08704 -10.87674 -10.54413 -10.23998 -10.16283 -9.84740 -9.73797 -9.51820 -9.10388 -8.92863 -7.04870 -5.85160 -3.14342 2.35516 2.43375 2.99051 3.38855 3.44486 3.45965 3.51189 3.64727 3.71797 4.25549 4.43153 4.51874 4.54246 4.80921 4.98888 5.01364 5.10574 5.17364 5.21048 5.34507 5.40760 5.48732 5.55889 5.64183 5.78014 5.81266 5.89100 6.04907 6.15714 6.30970 6.32342 6.53175 6.68818 6.83827 6.98765 7.36023 7.64971 8.03127 8.34053 9.44843 10.01929 10.36080 11.37254 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.024215 B = 0.002345 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.039097 B =11935.167200 C =12524.219845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 H 0.112 0.888 4 C -0.148 4.148 5 C 0.453 3.547 6 F -0.183 7.183 7 F -0.184 7.184 8 F -0.180 7.180 9 C 0.521 3.479 10 O -0.545 6.545 11 N -0.719 5.719 12 C 0.130 3.870 13 C -0.120 4.120 14 C -0.169 4.169 15 C 0.167 3.833 16 N -0.706 5.706 17 C -0.243 4.243 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.148 4.148 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.404 0.596 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.068 0.932 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 -5.809 -21.340 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.138 4.138 3 H 0.130 0.870 4 C -0.186 4.186 5 C 0.399 3.601 6 F -0.165 7.165 7 F -0.165 7.165 8 F -0.162 7.162 9 C 0.306 3.694 10 O -0.423 6.423 11 N -0.369 5.369 12 C 0.007 3.993 13 C -0.139 4.139 14 C -0.210 4.210 15 C 0.055 3.945 16 N -0.344 5.344 17 C -0.374 4.374 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.187 4.187 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.239 0.761 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.189 -6.372 -21.248 22.782 hybrid contribution -0.621 1.193 0.371 1.395 sum 4.568 -5.179 -20.877 21.989 Atomic orbital electron populations 1.22123 0.91601 1.03907 1.04166 1.21284 0.98803 1.01493 0.92193 0.87019 1.22704 1.06428 1.00252 0.89230 1.20584 0.74641 0.78784 0.86079 1.93187 1.88430 1.38927 1.95908 1.93199 1.84464 1.83841 1.55020 1.93157 1.30335 1.96452 1.96237 1.20179 0.80193 0.84480 0.84541 1.90712 1.38274 1.26425 1.86895 1.46036 1.53215 1.32084 1.05580 1.21513 0.99006 0.95921 0.82824 1.22719 1.00507 0.98135 0.92541 1.23921 0.97782 0.97716 1.01575 1.21091 0.91635 0.90543 0.91230 1.42172 1.02594 1.45554 1.44105 1.19288 0.92760 1.13139 1.12212 0.90984 1.24766 0.95209 1.00491 1.00387 1.69656 0.96826 1.45884 1.45704 0.86168 0.76945 0.81572 0.81373 1.21662 1.21733 1.20680 1.23442 1.01234 0.98739 0.95326 0.91089 0.90136 0.91371 0.86308 0.86494 0.76112 0.91728 0.91466 0.88866 0.91412 0.91479 0.91937 0.78121 0.93410 0.91290 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 8.37 37.16 0.31 -0.83 16 2 C -0.12 -0.92 2.63 -91.77 -0.24 -1.16 16 3 H 0.11 0.77 7.47 -51.93 -0.39 0.38 16 4 C -0.15 -1.11 4.20 -26.73 -0.11 -1.23 16 5 C 0.45 3.62 3.13 37.16 0.12 3.73 16 6 F -0.18 -1.60 16.46 2.25 0.04 -1.56 16 7 F -0.18 -1.63 17.32 2.25 0.04 -1.59 16 8 F -0.18 -1.50 14.38 2.25 0.03 -1.46 16 9 C 0.52 5.75 7.15 -10.98 -0.08 5.67 16 10 O -0.55 -7.85 15.89 5.56 0.09 -7.77 16 11 N -0.72 -7.70 5.40 -60.30 -0.33 -8.02 16 12 C 0.13 1.60 5.50 -4.04 -0.02 1.58 16 13 C -0.12 -1.68 3.62 -89.80 -0.33 -2.00 16 14 C -0.17 -2.66 7.44 -25.83 -0.19 -2.85 16 15 C 0.17 3.14 4.57 -67.02 -0.31 2.83 16 16 N -0.71 -16.90 5.31 -52.54 -0.28 -17.18 16 17 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.35 13.06 55.49 0.72 -26.63 16 21 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 C -0.15 -2.25 7.39 -25.91 -0.19 -2.44 16 26 H 0.07 0.48 7.37 -51.92 -0.38 0.09 16 27 H 0.08 0.54 6.00 -51.93 -0.31 0.23 16 28 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.12 0.90 7.91 -51.92 -0.41 0.49 16 30 H 0.12 0.83 8.12 -51.93 -0.42 0.41 16 31 H 0.40 3.71 7.82 -40.82 -0.32 3.40 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.86 7.88 -51.93 -0.41 0.45 16 34 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.38 9.73 7.90 -40.82 -0.32 9.41 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -30.64 349.57 -6.60 -37.25 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.88 Total: 8.70 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.29 Total: -3.83 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.12 Total: -51.82 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.11 Total: -4.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.64 -6.60 -37.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100527650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.124 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds