Wall clock time and date at job start Tue Mar 31 2020 09:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35986 * 117.00406 * 2 1 4 4 C 1.38693 * 120.00171 * 179.97438 * 3 2 1 5 5 C 1.38131 * 119.99592 * 180.25732 * 4 3 2 6 6 C 1.38694 * 120.00418 * 359.51297 * 5 4 3 7 7 O 1.35990 * 120.00341 * 180.25807 * 6 5 4 8 8 C 1.42900 * 116.99797 * 354.85173 * 7 6 5 9 9 H 1.09008 * 109.47084 * 324.67718 * 8 7 6 10 10 C 1.53001 * 109.47090 * 84.67757 * 8 7 6 11 11 C 1.50694 * 109.47050 * 204.67915 * 8 7 6 12 12 O 1.21287 * 120.00007 * 359.97438 * 11 8 7 13 13 N 1.34772 * 120.00184 * 179.97438 * 11 8 7 14 14 C 1.46505 * 120.00136 * 179.97438 * 13 11 8 15 15 C 1.52996 * 109.47210 * 180.02562 * 14 13 11 16 16 N 1.46493 * 109.47260 * 180.02562 * 15 14 13 17 17 C 1.36937 * 120.00032 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00332 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99843 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00560 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99750 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47331 * 60.00306 * 21 19 17 23 23 H 1.48502 * 109.47046 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47292 * 299.99948 * 21 19 17 25 25 C 1.38698 * 119.99884 * 0.46753 * 6 5 4 26 26 C 1.38136 * 119.99827 * 359.76602 * 25 6 5 27 27 H 1.08996 * 109.46853 * 300.00309 * 1 2 3 28 28 H 1.09002 * 109.46905 * 59.99436 * 1 2 3 29 29 H 1.08990 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.07995 * 120.00005 * 359.97438 * 4 3 2 31 31 H 1.08010 * 119.99576 * 179.73099 * 5 4 3 32 32 H 1.09007 * 109.46887 * 180.02562 * 10 8 7 33 33 H 1.08999 * 109.46844 * 299.99681 * 10 8 7 34 34 H 1.08995 * 109.47033 * 60.00247 * 10 8 7 35 35 H 0.96998 * 119.99922 * 0.02562 * 13 11 8 36 36 H 1.08993 * 109.47390 * 300.01052 * 14 13 11 37 37 H 1.09004 * 109.46432 * 60.01061 * 14 13 11 38 38 H 1.09004 * 109.47416 * 300.01130 * 15 14 13 39 39 H 1.09006 * 109.46861 * 60.00652 * 15 14 13 40 40 H 0.96998 * 119.99893 * 0.02562 * 16 15 14 41 41 H 0.96991 * 120.00527 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.00122 * 179.78994 * 25 6 5 43 43 H 1.08000 * 120.00094 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 3.4315 1.2841 0.0005 5 6 4.0586 2.5149 0.0059 6 6 3.3033 3.6781 0.0006 7 8 3.9207 4.8898 0.0005 8 6 5.3446 4.8923 0.1204 9 1 5.6553 4.0806 0.7784 10 6 5.9731 4.6981 -1.2610 11 6 5.7978 6.2084 0.6980 12 8 4.9817 7.0605 0.9788 13 7 7.1098 6.4385 0.9024 14 6 7.5504 7.7182 1.4634 15 6 9.0750 7.7209 1.5919 16 7 9.5155 9.0002 2.1534 17 6 10.8487 9.2344 2.3602 18 1 11.5755 8.4761 2.1091 19 6 11.2660 10.4465 2.8928 20 7 10.3803 11.3705 3.1994 21 14 13.0847 10.7656 3.1756 22 1 13.8105 10.6727 1.8834 23 1 13.2657 12.1235 3.7490 24 1 13.6238 9.7543 4.1199 25 6 1.9182 3.6056 -0.0004 26 6 1.2910 2.3748 -0.0009 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 4.0196 0.3784 0.0014 31 1 5.1372 2.5714 0.0107 32 1 7.0593 4.6996 -1.1694 33 1 5.6453 3.7461 -1.6786 34 1 5.6624 5.5098 -1.9188 35 1 7.7626 5.7572 0.6775 36 1 7.2401 8.5296 0.8051 37 1 7.1023 7.8570 2.4473 38 1 9.3856 6.9093 2.2500 39 1 9.5227 7.5822 0.6078 40 1 8.8627 9.6815 2.3786 41 1 10.6719 12.2176 3.5711 42 1 1.3300 4.5114 -0.0011 43 1 0.2125 2.3183 -0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132104396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:20 Heat of formation + Delta-G solvation = -67.881906 kcal Electronic energy + Delta-G solvation = -24051.232402 eV Core-core repulsion = 20291.024758 eV Total energy + Delta-G solvation = -3760.207644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96027 -39.98446 -38.84961 -36.64012 -35.67949 -33.99654 -32.54133 -31.43212 -30.90773 -29.57733 -27.75728 -27.48978 -24.92892 -23.62390 -23.17181 -22.11667 -21.50247 -20.24344 -18.89319 -18.05680 -17.68452 -17.11908 -16.33533 -16.14357 -15.93864 -15.74146 -15.14795 -15.01072 -14.66585 -14.48581 -14.06148 -13.84039 -13.57872 -13.53148 -13.21266 -13.03416 -12.90792 -12.83356 -12.74859 -12.33450 -12.02626 -11.75059 -11.44324 -11.13691 -11.01935 -10.85299 -10.81547 -10.77670 -10.16975 -9.87324 -9.68661 -9.43485 -9.04299 -8.88445 -8.04690 -7.01902 -5.81135 -3.12315 0.89498 1.13954 2.44674 2.57674 2.93096 3.39547 3.41681 3.44237 3.47171 3.49702 4.32410 4.41865 4.46387 4.52382 4.58140 4.63855 4.65882 4.74508 4.80200 4.94639 5.05592 5.14729 5.26439 5.29940 5.47406 5.47827 5.56389 5.63545 5.73392 5.75199 5.91751 5.95577 5.99307 6.10131 6.20312 6.40406 6.66029 6.67140 6.91805 7.15702 7.49100 7.63458 8.19061 8.36189 9.47455 10.01821 10.36420 11.41228 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.044458 B = 0.001867 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.653679 B =14992.783681 C =15233.135720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.086 3.914 4 C -0.110 4.110 5 C -0.173 4.173 6 C 0.099 3.901 7 O -0.284 6.284 8 C 0.067 3.933 9 H 0.099 0.901 10 C -0.177 4.177 11 C 0.515 3.485 12 O -0.517 6.517 13 N -0.718 5.718 14 C 0.112 3.888 15 C 0.145 3.855 16 N -0.729 5.729 17 C -0.247 4.247 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C -0.109 4.109 26 C -0.167 4.167 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.136 0.864 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.038 -24.348 -9.436 31.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.042 3.958 4 C -0.129 4.129 5 C -0.191 4.191 6 C 0.054 3.946 7 O -0.196 6.196 8 C 0.007 3.993 9 H 0.117 0.883 10 C -0.235 4.235 11 C 0.298 3.702 12 O -0.392 6.392 13 N -0.371 5.371 14 C -0.011 4.011 15 C 0.017 3.983 16 N -0.374 5.374 17 C -0.378 4.378 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.128 4.128 26 C -0.185 4.185 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.234 0.766 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.154 0.846 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.464 -23.698 -9.221 31.426 hybrid contribution 1.031 0.118 0.172 1.051 sum -17.434 -23.580 -9.050 30.690 Atomic orbital electron populations 1.23041 0.78503 1.03898 1.01344 1.86071 1.21246 1.26713 1.89339 1.18906 0.92298 0.84249 1.00366 1.20198 0.91386 0.97999 1.03276 1.21147 1.00344 0.91390 1.06231 1.18956 0.92332 0.84246 0.99091 1.86238 1.19377 1.26167 1.87866 1.22206 0.80785 0.97476 0.98818 0.88341 1.22363 1.01600 1.04115 0.95411 1.19975 0.82941 0.88248 0.79022 1.90761 1.52612 1.45960 1.49836 1.45798 1.06558 1.19355 1.65387 1.21628 0.96429 0.83956 0.99127 1.20752 0.89624 0.91014 0.96932 1.42171 1.05798 1.13236 1.76226 1.19143 0.83542 0.99311 1.35757 0.91059 1.24784 0.97835 0.96538 1.01577 1.69653 1.32423 1.06765 1.48945 0.86218 0.84641 0.77095 0.77889 1.21180 1.21596 1.21191 1.20255 0.91453 0.98179 1.02881 1.21063 1.00107 0.91345 1.06024 0.92656 0.92695 0.88303 0.84819 0.84438 0.90018 0.90642 0.90478 0.76584 0.91045 0.91075 0.95757 0.95731 0.77971 0.93279 0.84597 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.74 10.50 -19.69 -0.21 -2.95 16 3 C 0.09 0.79 6.69 -39.24 -0.26 0.53 16 4 C -0.11 -0.96 9.98 -39.45 -0.39 -1.36 16 5 C -0.17 -1.53 8.23 -39.45 -0.32 -1.86 16 6 C 0.10 1.08 6.60 -39.24 -0.26 0.82 16 7 O -0.28 -3.64 9.34 -39.62 -0.37 -4.01 16 8 C 0.07 0.71 2.65 -27.89 -0.07 0.63 16 9 H 0.10 0.80 6.31 -51.92 -0.33 0.47 16 10 C -0.18 -1.39 9.06 37.16 0.34 -1.06 16 11 C 0.51 7.36 7.23 -10.99 -0.08 7.28 16 12 O -0.52 -9.93 16.50 -14.36 -0.24 -10.17 16 13 N -0.72 -9.29 5.45 -60.30 -0.33 -9.62 16 14 C 0.11 1.87 5.79 -4.04 -0.02 1.85 16 15 C 0.15 2.76 6.37 -4.05 -0.03 2.73 16 16 N -0.73 -18.31 5.60 -59.91 -0.34 -18.64 16 17 C -0.25 -6.83 9.99 -15.06 -0.15 -6.98 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 21 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.11 -1.09 9.98 -39.45 -0.39 -1.48 16 26 C -0.17 -1.43 9.03 -39.45 -0.36 -1.78 16 27 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 28 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.14 0.92 5.42 -52.48 -0.28 0.64 16 32 H 0.08 0.48 7.57 -51.93 -0.39 0.09 16 33 H 0.07 0.50 6.90 -51.93 -0.36 0.14 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.40 3.79 7.89 -40.82 -0.32 3.47 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.39 10.31 7.67 -40.82 -0.31 10.00 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 43 H 0.13 0.82 6.29 -52.49 -0.33 0.49 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -35.27 362.70 -7.47 -42.75 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.05 Total: 7.39 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.11 Total: 0.05 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.06 Total: -55.64 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.81 Total: -17.14 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.27 -7.47 -42.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132104396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.134 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds