Wall clock time and date at job start Tue Mar 31 2020 09:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47118 * 2 1 4 4 C 1.53001 * 109.47346 * 239.99599 * 2 1 3 5 5 C 1.52993 * 109.47324 * 174.99984 * 4 2 1 6 6 H 1.08994 * 109.47370 * 305.00588 * 5 4 2 7 7 C 1.53005 * 109.47322 * 185.00002 * 5 4 2 8 8 N 1.46502 * 109.46898 * 65.00355 * 5 4 2 9 9 C 1.34779 * 120.00048 * 204.99640 * 8 5 4 10 10 O 1.21280 * 120.00205 * 355.28058 * 9 8 5 11 11 C 1.50699 * 119.99902 * 175.27757 * 9 8 5 12 12 C 1.52995 * 115.55451 * 54.06499 * 11 9 8 13 13 F 1.39897 * 109.46902 * 54.18301 * 12 11 9 14 14 F 1.39891 * 109.47408 * 174.18714 * 12 11 9 15 15 F 1.39905 * 109.46862 * 294.18717 * 12 11 9 16 16 C 1.53005 * 117.49592 * 268.39318 * 11 9 8 17 17 C 1.52999 * 117.49395 * 199.73540 * 11 9 8 18 18 N 1.46501 * 109.46983 * 120.00021 * 2 1 3 19 19 C 1.36940 * 119.99786 * 274.99890 * 18 2 1 20 20 H 1.07997 * 120.00189 * 359.97438 * 19 18 2 21 21 C 1.38813 * 119.99978 * 179.97438 * 19 18 2 22 22 N 1.31619 * 119.99836 * 359.72808 * 21 19 18 23 23 Si 1.86794 * 120.00301 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47370 * 179.72515 * 23 21 19 25 25 H 1.48499 * 109.47100 * 299.72960 * 23 21 19 26 26 H 1.48501 * 109.47158 * 59.72662 * 23 21 19 27 27 H 1.08997 * 109.47241 * 300.00275 * 1 2 3 28 28 H 1.09005 * 109.46606 * 59.99876 * 1 2 3 29 29 H 1.08996 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47133 * 295.00778 * 4 2 1 31 31 H 1.09004 * 109.46963 * 55.00453 * 4 2 1 32 32 H 1.08996 * 109.46862 * 300.00626 * 7 5 4 33 33 H 1.08999 * 109.46622 * 60.00371 * 7 5 4 34 34 H 1.08996 * 109.47073 * 180.02562 * 7 5 4 35 35 H 0.97000 * 120.00262 * 24.99788 * 8 5 4 36 36 H 1.09003 * 117.50270 * 359.97438 * 16 11 9 37 37 H 1.09001 * 117.49924 * 145.02286 * 16 11 9 38 38 H 1.09007 * 117.49653 * 214.97587 * 17 11 9 39 39 H 1.08999 * 117.50756 * 0.02562 * 17 11 9 40 40 H 0.96999 * 120.00399 * 94.99775 * 18 2 1 41 41 H 0.97003 * 120.00032 * 0.27133 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.8571 0.4357 -1.2677 7 6 4.0645 -1.2252 -2.6240 8 7 4.1536 -1.3343 -0.1823 9 6 5.3747 -0.9912 0.2734 10 8 6.0222 -0.1445 -0.3052 11 6 5.9356 -1.6597 1.5021 12 6 5.9692 -3.1888 1.4643 13 9 6.6481 -3.6121 0.3167 14 9 6.6292 -3.6690 2.6004 15 9 4.6607 -3.6835 1.4411 16 6 5.6701 -0.9921 2.8530 17 6 7.0713 -0.9461 2.2382 18 7 2.0183 -0.6906 1.1962 19 6 2.1491 -0.0074 2.3758 20 1 1.8926 1.0405 2.4241 21 6 2.6112 -0.6619 3.5093 22 7 2.9187 -1.9404 3.4517 23 14 2.7903 0.2701 5.1182 24 1 3.2922 -0.6501 6.1701 25 1 3.7514 1.3878 4.9385 26 1 1.4696 0.8136 5.5251 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7516 -1.7716 -1.2055 31 1 1.6055 -0.2618 -2.1370 32 1 3.7722 -2.2742 -2.6698 33 1 3.6264 -0.6888 -3.4656 34 1 5.1508 -1.1487 -2.6696 35 1 3.6647 -2.0585 0.2388 36 1 5.0901 -0.0692 2.8530 37 1 5.5197 -1.6423 3.7148 38 1 7.8422 -1.5661 2.6960 39 1 7.4125 0.0070 1.8342 40 1 2.2490 -1.6318 1.1527 41 1 2.8260 -2.4243 2.6161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135525093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:19 Heat of formation + Delta-G solvation = -152.378169 kcal Electronic energy + Delta-G solvation = -28785.303911 eV Core-core repulsion = 24479.575494 eV Total energy + Delta-G solvation = -4305.728417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.74057 -47.29297 -47.18057 -39.75667 -37.33752 -35.99465 -34.32735 -32.49751 -30.69368 -28.29820 -26.85761 -26.38447 -23.56942 -23.40490 -22.05856 -20.77564 -20.42738 -19.66995 -18.29216 -17.93867 -17.72232 -17.35212 -15.96755 -15.62604 -15.02953 -14.50176 -14.30822 -14.13092 -13.99519 -13.85578 -13.66486 -13.59041 -13.51858 -13.32725 -13.19339 -13.13916 -12.90226 -12.19896 -12.13599 -11.83983 -11.73426 -11.65777 -11.19750 -11.09842 -10.80737 -10.52736 -10.46739 -10.30589 -10.27295 -10.15463 -10.02213 -9.45383 -9.19686 -8.98344 -8.53154 -7.01489 -6.09168 -3.09310 2.73362 3.18037 3.40277 3.46294 3.49519 3.65614 3.85575 4.14870 4.41786 4.60087 4.76030 4.92764 5.07612 5.18003 5.24179 5.34860 5.39131 5.54440 5.59948 5.77116 5.83762 5.88550 5.91379 5.97952 6.04206 6.14567 6.27995 6.32173 6.43807 6.48144 6.61274 6.62202 6.76571 6.93547 7.00366 7.80046 7.94839 8.61801 8.72393 9.19749 10.03740 10.20836 11.36689 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.009410 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.460851 B = 2974.705606 C = 4571.501398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.049 0.951 4 C -0.136 4.136 5 C 0.151 3.849 6 H 0.084 0.916 7 C -0.164 4.164 8 N -0.691 5.691 9 C 0.573 3.427 10 O -0.544 6.544 11 C -0.235 4.235 12 C 0.498 3.502 13 F -0.186 7.186 14 F -0.177 7.177 15 F -0.167 7.167 16 C -0.078 4.078 17 C -0.143 4.143 18 N -0.728 5.728 19 C -0.323 4.323 20 H 0.060 0.940 21 C -0.037 4.037 22 N -0.934 5.934 23 Si 1.062 2.938 24 H -0.284 1.284 25 H -0.295 1.295 26 H -0.299 1.299 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.403 0.597 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.361 0.639 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.673 -0.893 -6.573 7.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 H 0.067 0.933 4 C -0.174 4.174 5 C 0.046 3.954 6 H 0.102 0.898 7 C -0.222 4.222 8 N -0.344 5.344 9 C 0.357 3.643 10 O -0.422 6.422 11 C -0.240 4.240 12 C 0.444 3.556 13 F -0.168 7.168 14 F -0.158 7.158 15 F -0.148 7.148 16 C -0.115 4.115 17 C -0.180 4.180 18 N -0.373 5.373 19 C -0.455 4.455 20 H 0.078 0.922 21 C -0.235 4.235 22 N -0.580 5.580 23 Si 0.894 3.106 24 H -0.209 1.209 25 H -0.223 1.223 26 H -0.227 1.227 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.241 0.759 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.195 0.805 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.497 -0.234 -5.356 6.997 hybrid contribution -0.939 -0.791 -1.448 1.898 sum 3.558 -1.026 -6.804 7.746 Atomic orbital electron populations 1.22402 0.99227 1.00641 1.00006 1.20212 0.91701 0.95634 0.85945 0.93309 1.22243 0.93818 1.01667 0.99701 1.20872 0.92621 0.97131 0.84779 0.89754 1.22213 1.01997 1.00903 0.97084 1.45996 1.17450 1.37328 1.33587 1.18575 0.81368 0.82021 0.82320 1.90632 1.59776 1.33870 1.57909 1.22390 1.12822 0.89352 0.99437 1.19147 0.73859 0.89475 0.73162 1.93166 1.80572 1.91814 1.51237 1.93147 1.81187 1.89823 1.51636 1.93202 1.36365 1.89245 1.95974 1.23286 0.94984 1.02634 0.90624 1.23259 0.92539 1.01851 1.00368 1.42491 1.79110 1.09312 1.06357 1.19963 1.41605 0.94876 0.89020 0.92233 1.25416 1.00031 0.97560 1.00527 1.70883 1.51162 1.07574 1.28372 0.83504 0.76047 0.74601 0.76484 1.20894 1.22291 1.22664 0.92791 0.94517 0.93760 0.91836 0.90504 0.92754 0.91892 0.92173 0.75864 0.86017 0.85729 0.87473 0.86734 0.80460 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.49 37.16 0.35 -2.42 16 2 C 0.17 3.20 2.89 -67.93 -0.20 3.01 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.14 -2.03 4.43 -26.73 -0.12 -2.15 16 5 C 0.15 2.44 2.54 -67.93 -0.17 2.26 16 6 H 0.08 1.51 7.65 -51.93 -0.40 1.11 16 7 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 8 N -0.69 -12.66 3.76 -53.81 -0.20 -12.86 16 9 C 0.57 11.34 6.94 -10.98 -0.08 11.27 16 10 O -0.54 -11.73 16.13 5.56 0.09 -11.64 16 11 C -0.24 -4.38 2.10 -155.66 -0.33 -4.71 16 12 C 0.50 9.04 3.05 37.15 0.11 9.16 16 13 F -0.19 -3.27 17.11 2.25 0.04 -3.23 16 14 F -0.18 -3.11 15.90 2.25 0.04 -3.08 16 15 F -0.17 -3.21 15.05 2.25 0.03 -3.17 16 16 C -0.08 -1.49 7.84 -26.69 -0.21 -1.70 16 17 C -0.14 -2.33 9.46 -26.69 -0.25 -2.58 16 18 N -0.73 -15.88 3.84 -53.43 -0.21 -16.08 16 19 C -0.32 -8.01 9.93 -15.06 -0.15 -8.16 16 20 H 0.06 1.53 7.83 -52.49 -0.41 1.12 16 21 C -0.04 -0.92 3.86 -17.43 -0.07 -0.99 16 22 N -0.93 -24.07 12.33 55.49 0.68 -23.38 16 23 Si 1.06 23.64 29.71 -169.99 -5.05 18.59 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.30 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.40 7.62 4.86 -40.82 -0.20 7.42 16 36 H 0.12 2.59 7.04 -51.93 -0.37 2.22 16 37 H 0.12 2.50 7.68 -51.93 -0.40 2.10 16 38 H 0.11 1.51 7.61 -51.93 -0.40 1.11 16 39 H 0.11 1.84 7.81 -51.93 -0.41 1.43 16 40 H 0.36 8.09 4.54 -40.82 -0.19 7.90 16 41 H 0.26 6.57 6.13 -40.82 -0.25 6.32 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -26.65 341.50 -5.78 -32.43 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -5.60 Total: 16.20 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.75 Total: 1.07 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.28 Total: -52.32 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 0.11 Total: -9.48 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.05 Total: 18.59 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -26.65 -5.78 -32.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135525093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.943 kcal (2) G-P(sol) polarization free energy of solvation -26.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds